Pou3f3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000038909 0.24 0.11 1.4e-15 0.18 0.17 0.18 0.18 2.0e-16 9.9e-16 1.8e-16 1.8e-16
2 Brain mRNA stability ENSRNOG00000038909 0.03 0.02 5.5e-03 0.01 0.01 0 0.01 4.0e-02 2.0e-02 1.7e-01 5.9e-02
3 NAcc mRNA stability ENSRNOG00000038909 0.04 0.03 1.2e-03 0.05 0.04 0.03 0.03 2.2e-04 1.1e-03 3.0e-03 1.3e-03
4 PL gene expression ENSRNOG00000038909 0.15 0.07 2.2e-08 0.12 0.1 0.1 0.11 4.9e-09 3.1e-08 2.4e-08 1.9e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.13.57.0-0.72.62.6-0.5
BMI without tail0.00.00.00.0-0.2-0.10.2
Body weight0.00.10.20.40.30.20.3
Epididymis fat weight0.10.20.3-0.30.40.5-0.5
Glucose0.30.50.9-0.9-0.6-0.2-0.8
Heart weight0.81.11.8-1.01.01.3-0.9
Left kidney weight0.10.20.50.70.30.50.3
Right kidney weight0.92.55.52.3-0.3-0.22.1
Tail length0.51.52.9-0.0-1.7-1.70.0
Length with tail0.31.01.80.7-1.2-1.30.5
Length without tail0.30.71.30.81.10.70.6
Liver weight, left0.20.40.50.7-0.5-0.60.6
Liver weight, right0.10.20.40.0-0.6-0.5-0.4
Parametrial fat weight0.00.00.10.1-0.20.00.4
Retroperitoneal fat weight0.20.81.21.00.70.61.1
Intraocular pressure1.01.42.4-0.71.51.5-0.7
Extensor digitorum longus weight3.915.532.2-0.95.75.4-0.6
Soleus weight0.72.04.10.32.01.90.5
Tibialis anterior weight1.96.713.7-0.53.73.6-0.4
Tibia length0.82.12.51.5-1.3-1.61.4
Number of licking bursts0.10.10.2-0.4-0.3-0.2-0.4
Food consumed during 24 hour testing period0.40.40.8-0.50.80.9-0.3
Times rat made contact with spout1.01.11.9-1.3-0.7-0.6-1.4
Mean time between licks in bursts0.91.22.20.41.51.40.8
Mean num. licks in bursts0.20.20.3-0.50.30.4-0.5
Std. dev. time between licks in bursts0.30.30.7-0.40.80.7-0.2
Water consumed over 24 hours0.20.20.4-0.60.20.3-0.6
Indifference point 0 sec0.40.61.31.10.60.30.7
Indifference point AUC0.70.81.0-0.80.81.0-0.9
Indifference point function ln k0.40.61.4-0.01.20.90.2
Indifference point function log k0.40.61.4-0.01.20.90.2
Delay discounting total patch changes 0 sec0.20.30.50.70.70.40.3
Delay discounting total patch changes 12 sec0.60.82.11.4-0.3-0.51.0
Delay discounting total patch changes 18 sec0.70.91.1-0.61.01.1-1.0
Delay discounting total patch changes 24 sec0.30.40.80.90.30.30.7
Delay discounting total patch changes 6 sec0.10.10.20.40.30.2-0.2
Delay discounting time to switch 0 sec0.50.81.00.8-1.0-0.90.8
Delay discounting water rate 0 sec0.81.22.3-1.20.80.7-1.5
Delay discounting water rate 12 sec0.40.60.9-1.00.50.6-0.9
Delay discounting water rate 18 sec0.10.10.2-0.10.1-0.2-0.4
Delay discounting water rate 24 sec0.20.20.3-0.50.60.2-0.5
Delay discounting water rate 6 sec0.81.11.5-1.20.80.9-1.2
Locomotor activity0.10.10.2-0.3-0.4-0.3-0.3
Locomotor testing distance0.61.12.10.5-1.5-1.40.2
Locomotor testing rearing1.32.03.01.3-1.6-1.70.9
Light reinforcement 11.32.35.00.12.22.10.2
Light reinforcement 20.40.51.0-0.21.01.0-0.2
Reaction time number correct0.60.81.9-0.21.41.20.1
Reaction time mean minus median0.50.71.3-0.1-1.1-1.1-0.5
Reaction time mean minus median AUC0.40.51.1-0.0-0.9-1.0-0.3
Reaction time num false alarms1.21.63.1-0.51.61.8-0.7
Reaction time num false alarms AUC1.31.93.6-0.31.91.9-0.5
Reaction time trials correct on left0.60.81.9-0.21.41.20.1
Reaction time trials on left0.50.81.7-0.21.31.10.1
Reaction time mean1.21.63.2-0.2-1.8-1.8-0.4
Reaction time mean AUC0.91.22.2-0.4-1.5-1.5-0.5
Median of all reaction times1.11.42.8-0.3-1.7-1.6-0.4
Reaction time omissions0.50.71.10.5-1.0-1.10.6
Reaction time false alarm rate0.40.61.2-0.01.01.1-0.4
Reaction time premature initiation rate0.10.10.30.1-0.4-0.6-0.1
Reaction time premature initiations0.00.00.00.00.2-0.0-0.1
Std. dev. reaction times0.81.12.20.2-1.5-1.4-0.1
Reaction time trials completed0.50.81.7-0.21.31.10.1
Reaction time trials AUC0.50.71.6-0.21.31.10.1
Social response proportion0.20.20.5-0.5-0.7-0.0-0.3
Social responses0.50.71.5-0.4-1.2-1.0-0.2
Social time2.93.87.20.8-2.7-2.60.6
Conditioned locomotion0.60.71.4-0.4-1.2-1.0-0.5
Cocaine response after cond. corrected1.01.12.0-1.40.70.8-1.2
Cocaine response after cond. not corrected0.60.71.0-0.90.60.7-1.0
Cocaine response before conditioning0.40.51.41.20.2-0.00.6
Saline control response0.40.61.31.20.2-0.31.0
Condit. Reinf. active minus inactive responses0.40.51.0-1.0-0.4-0.3-1.0
Condit. Reinf. active-inactive response ratio0.80.91.6-0.7-1.3-0.9-0.8
Condit. Reinf. active responses0.30.50.8-0.90.40.3-0.9
Condit. Reinf. inactive responses0.60.71.80.21.31.00.4
Condit. Reinf. lever presses0.10.20.3-0.2-0.3-0.4-0.6
Condit. Reinf. lever reinforcers received0.60.81.4-1.10.60.5-1.2
Pavlov. Cond. lever latency0.10.10.3-0.40.50.5-0.0
Pavlov. Cond. magazine entry latency0.80.91.91.4-0.3-0.41.1
Pavlov. Cond. change in total contacts0.20.30.70.3-0.7-0.90.1
Pavlov. Cond. index score0.20.30.30.6-0.6-0.60.3
Pavlov. Cond. latency score0.10.10.20.5-0.3-0.30.2
Pavlov. Cond. lever contacts0.30.40.80.5-0.8-0.90.1
Pavlov. Cond. magazine entry number0.50.61.0-1.00.70.7-0.8
Pavlov. Cond. intertrial magazine entries2.53.35.0-1.42.12.2-1.3
Pavlov. Cond. lever-magazine prob. diff.0.20.30.50.7-0.4-0.50.4
Pavlov. Cond. response bias0.91.31.91.4-1.0-1.11.0
Conditioned reinforcement - actives0.70.71.0-1.00.20.9-1.0
Conditioned reinforcement - inactives0.00.00.0-0.0-0.20.20.1
Conditioned locomotion0.40.51.5-0.10.71.2-0.0
Intermittent access intake day 1-15 change0.10.10.10.3-0.10.20.4
Intermittent access intake escalation0.10.10.20.4-0.5-0.30.4
Intermittent access intake escalation 20.10.10.20.1-0.5-0.30.1
Intermitt. access day 1 inactive lever presses0.80.91.20.8-1.0-1.10.8
Intermitt. access day 15 inactive lever presses0.40.40.70.9-0.3-0.20.8
Intermitt. access escalation Index0.10.10.30.30.1-0.30.6
Intermittent access day 1 total infusions1.92.13.8-2.0-0.10.9-1.9
Intermittent access day 15 total infusions0.70.81.5-1.2-0.40.6-1.1
Intermittent access terminal intake (last 3 days)1.11.21.9-1.4-0.01.1-1.3
Intermittent access total infusions1.51.63.0-1.7-0.21.0-1.6
Intermittent access day 1 locomotion0.10.10.3-0.4-0.00.5-0.2
Intermittent access day 15 total locomotion0.20.20.6-0.30.30.8-0.2
Intermittent access total locomotion0.30.30.7-0.50.40.9-0.3
Intermittent access standard deviation0.80.92.5-0.4-1.6-0.7-0.6
Cocaine induced anxiety1.61.83.00.91.71.70.7
Post-drug Anxiety0.80.91.9-0.21.41.2-0.3
Baseline Anxiety1.71.83.1-1.6-0.8-0.9-1.8
Lifetime Intake1.51.72.8-1.70.01.2-1.6
Incentive Sensitization - Responses0.70.71.31.0-0.1-0.61.1
Incentive Sensitization - Breakpoint0.80.81.71.10.0-0.41.3
Progressive ratio test 1 active lever presses1.61.73.3-1.10.91.8-1.2
Progressive ratio test 1 breakpoint1.51.63.0-1.10.81.7-1.2
Progressive ratio test 1 inactive lever presses0.40.40.60.8-0.7-0.20.6
Progressive ratio test 2 active lever presses0.10.10.2-0.10.20.40.1
Progressive ratio test 2 breakpoint0.30.30.7-0.30.70.80.0
Progressive ratio test 2 inactive lever presses0.40.51.00.8-0.5-0.11.0
Total sessions with >9 infusions2.22.44.6-1.31.32.1-1.2
Short access day 1 total inactive lever presses0.50.61.11.1-0.10.41.0
Short access day 10 total inactive lever presses1.41.51.91.4-0.9-1.31.4
Short access day 1 total infusions0.60.61.9-0.20.61.4-0.4
Short access day 10 total infusions4.14.57.5-2.70.41.8-2.7
Short access total infusions1.82.02.9-1.50.51.7-1.6
Short access day 1 locomotion0.60.61.7-0.60.51.3-0.3
Short access day 10 total locomotion0.00.00.1-0.1-0.3-0.10.0
Short access total locomotion0.40.41.1-0.20.61.10.1
Compulsive drug intake0.20.20.70.0-0.4-0.80.1
One hour access (0.3 mA shock)2.12.44.9-2.2-1.0-0.3-2.0
One hour access (shock baseline)1.31.53.1-1.8-0.60.2-1.6
Number of responses in last shaping day0.20.20.30.3-0.6-0.50.2
Context. condit. distance diff. score1.51.82.41.2-1.3-1.51.3
Locomotion velocity, session 10.00.00.0-0.20.00.00.1
Locomotion distance, session 10.60.81.60.31.31.20.4
Locomotion velocity, session 21.82.14.8-0.12.21.90.1
Locomotion distance, session 21.52.14.1-0.62.01.9-0.5
Locomotion velocity, session 30.30.30.70.8-0.2-0.50.5
Locomotion distance, session 30.10.10.10.3-0.3-0.3-0.0
Stereotopy head waving bouts, day 30.20.20.5-0.2-0.6-0.7-0.3
Stereotopy head waving duration, day 30.10.20.3-0.5-0.3-0.3-0.6
Locomotion velocity, session 71.31.42.01.21.30.91.4
Locomotion distance, session 70.60.71.40.21.21.00.7
Stereotopy head waving bouts, day 70.10.10.2-0.0-0.2-0.5-0.1
Stereotopy head waving duration, day 70.50.60.91.0-0.4-0.70.8
Locomotion velocity, session 81.61.94.01.8-0.1-0.42.0
Locomotion distance, session 80.81.22.71.30.50.11.6
Degree of sensitization distance1.21.22.1-0.81.41.4-0.1
Degree of sensitization stereotypy0.20.20.30.6-0.4-0.50.5
Condit. Reinf. active minus inactive responses1.11.22.2-1.50.50.6-1.5
Condit. Reinf. active-inactive response ratio0.80.91.8-1.30.20.3-1.3
Condit. Reinf. active responses0.30.40.7-0.80.50.4-0.7
Condit. Reinf. inactive responses0.30.40.80.00.90.70.2
Incentive salience index mean0.10.10.3-0.50.0-0.1-0.5
Condit. Reinf. lever presses0.71.01.31.2-0.8-1.01.0
Time in familiar zone, hab. session 11.11.02.1-1.2-0.6-0.4-1.5
Time in novel zone, hab. session 10.10.10.30.1-0.5-0.40.3
Total zone transitions, hab. session 11.31.93.81.90.1-0.22.0
Total locomotion distance, hab. session 10.40.61.40.31.21.00.3
Locomotion velocity, hab. session 10.50.81.20.81.10.80.8
Time in familiar zone, hab. session 20.20.20.4-0.1-0.6-0.6-0.4
Time in novel zone, hab. session 20.00.00.0-0.0-0.0-0.10.1
Total zone transitions, hab. session 20.10.20.4-0.20.40.6-0.2
Total locomotion distance, hab. session 21.62.12.7-1.21.61.6-1.3
Locomotion velocity, hab. session 21.21.62.4-0.91.51.6-0.9
Novel to familiar place preference ratio1.11.12.6-1.6-0.2-0.0-1.4
Novelty place preference1.01.02.4-1.5-0.3-0.1-1.3
Time in novel zone, NPP test1.21.22.6-1.6-0.5-0.3-1.4
Total zone transitions, NPP test0.30.51.00.21.00.90.2
Total locomotion distance, NPP test0.81.12.1-0.51.41.2-0.6
Locomotion velocity, NPP test0.91.33.0-0.21.71.5-0.2
Pavlov. Cond. lever latency1.01.31.7-1.30.91.2-1.1
Pavlov. Cond. magazine entry latency0.10.10.1-0.0-0.3-0.3-0.3
Pavlov. Cond. change in total contacts0.00.00.1-0.30.10.0-0.1
Pavlov. Cond. index score0.30.40.80.3-0.8-0.90.0
Pavlov. Cond. latency score0.50.61.10.5-0.9-1.10.3
Pavlov. Cond. lever contacts0.60.70.80.9-0.7-0.90.7
Pavlov. Cond. magazine entry number0.50.61.10.21.00.90.6
Pavlov. Cond. intertrial magazine entries0.20.30.5-0.70.70.5-0.3
Pavlov. Cond. lever-magazine prob. diff.0.10.20.3-0.0-0.5-0.6-0.2
Pavlov. Cond. response bias0.20.20.50.2-0.6-0.7-0.0
Bone: apparent density3.55.810.71.6-3.0-3.31.0
Bone surface0.71.22.30.9-1.1-1.50.5
Bone volume2.03.36.41.2-2.2-2.50.8
Bone: connectivity density0.91.43.10.6-1.5-1.80.1
Bone: cortical apparent density2.02.64.61.02.21.81.2
Bone: cortical area0.10.10.30.6-0.0-0.30.4
Bone: cortical porosity0.80.81.60.6-1.1-1.30.4
Bone: cortical porosity1.41.52.31.1-1.3-1.51.0
Bone: cortical thickness0.20.30.60.80.0-0.40.6
Bone: cortical thickness0.20.20.40.5-0.2-0.40.6
Bone: cortical tissue density2.02.64.51.02.11.81.3
Bone: elastic displacement0.40.40.7-0.8-0.6-0.5-0.7
Bone: elastic work0.50.71.20.1-1.1-1.10.5
Bone: endosteal estimation0.00.10.2-0.1-0.4-0.3-0.1
Bone: endosteal perimeter0.00.10.1-0.1-0.3-0.2-0.3
Bone: final force0.40.71.41.2-0.0-0.31.1
Bone: final moment0.30.61.21.10.0-0.31.0
Bone: marrow area0.00.00.1-0.1-0.4-0.3-0.1
Bone: maximum diameter0.20.30.50.4-0.6-0.70.2
Bone: maximum force0.30.51.01.0-0.1-0.41.0
Bone: maximum moment0.30.50.90.9-0.0-0.30.9
Bone: minimum diameter0.10.20.30.60.40.20.5
Bone: periosteal estimation0.10.30.50.5-0.6-0.70.3
Bone: periosteal perimeter0.10.10.3-0.2-0.3-0.4-0.5
Bone: post-yield work0.91.22.31.5-0.5-0.71.3
Bone: stiffness0.71.02.21.50.0-0.11.4
Bone: tissue strength0.10.10.30.20.50.30.3
Bone: trabecular number3.45.39.01.7-2.7-3.01.3
Bone: trabecular spacing1.52.04.1-0.51.92.0-0.3
Bone: trabecular thickness3.34.08.00.8-2.6-2.80.6
Bone: trabecular tissue density0.30.40.80.90.00.00.8
Breakpoint value in progressive ratio session0.30.30.5-0.3-0.7-0.6-0.4
Distance traveled before self-admin0.50.50.70.6-0.9-0.60.8
Distance traveled after self-admin3.23.54.42.1-2.0-1.81.5
Delta time in closed arm before/after self-admin0.00.00.0-0.10.2-0.2-0.2
Delta time in open arm before/after self-admin0.60.51.10.3-0.9-1.10.4
Diff in mean of infusions in LGA sessions0.60.71.3-0.4-1.1-1.1-0.4
Extinction: sum of active levers before priming1.11.12.9-0.2-1.7-1.3-0.3
Active lever presses in extinction session 62.52.43.8-2.00.61.3-1.9
Delta distance traveled before/after self-admin0.50.51.21.1-0.4-0.60.7
Delta ambulatory time before/after self-admin0.20.30.70.9-0.2-0.20.5
Time in closed arm before self-admin1.01.22.1-1.4-0.8-0.4-1.5
Time in closed arm after self-admin0.30.30.70.1-0.8-0.7-0.0
Time in open arm before self-admin0.70.81.8-0.11.11.3-0.2
Time in open arm after self-admin0.40.50.60.6-0.7-0.70.8
Sum of active levers in priming session hrs 5-61.41.42.6-1.6-0.5-0.3-1.6
Time to tail flick, vehicle, before self-admin0.10.10.2-0.1-0.4-0.40.0
Time to tail flick, vehicle, after self-admin0.10.10.2-0.3-0.2-0.5-0.1
Time to tail flick, test, before self-admin2.32.33.5-1.21.71.9-1.1
Time to tail flick, test, after self-admin1.01.01.7-0.91.01.3-0.7
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.10.30.20.1
Delta time to tail flick, test, before/after SA0.40.40.9-0.0-1.0-0.80.0
Ambulatory time before self-admin0.20.20.50.3-0.5-0.20.7
Ambulatory time after self-admin1.11.22.71.7-0.7-0.31.3
Total heroin consumption1.01.22.3-1.4-0.6-0.2-1.5
Area under the delay curve2.12.34.1-2.00.61.0-1.9
Delay disc. indifference point, 0s delay0.60.60.90.60.81.00.6
Delay disc. indifference point, 16s delay1.31.32.6-1.6-0.5-0.2-1.5
Delay disc. indifference point, 2s delay1.01.11.5-1.20.51.0-1.2
Delay disc. indifference point, 24s delay0.10.10.3-0.50.00.2-0.5
Delay disc. indifference point, 4s delay0.40.40.9-0.40.71.0-0.2
Delay disc. indifference point, 8s delay1.41.42.6-1.60.40.6-1.6
Delay discount exponential model param2.12.24.12.0-0.5-1.01.9
Delay discount hyperbolic model param2.12.33.71.9-0.8-1.21.8
Fecal boli incidents, locomotor time 11.11.21.5-0.81.21.2-1.0
Change in fecal boli incidents, locomotor task0.30.30.40.5-0.6-0.70.3
Time >=10cm from walls, locomotor time 12.22.24.6-0.62.12.0-0.3
Bouts of movement, locomotor time 17.38.19.1-2.92.72.7-3.0
Total resting periods, locomotor time 16.47.17.4-2.62.72.7-2.7
Rest time, locomotor task time 11.92.14.4-1.90.10.5-2.1
Distance moved, locomotor task time 10.20.30.50.20.70.60.4
Vertical activity count, locomotor time 11.11.11.71.3-0.5-0.91.3
Time >=10cm from walls, locomotor time 20.10.10.1-0.3-0.10.0-0.3
Bouts of movement, locomotor time 21.92.13.1-1.11.41.8-1.4
Total resting periods, locomotor time 21.71.83.0-1.01.31.7-1.3
Rest time, locomotor task time 20.20.30.6-0.5-0.4-0.3-0.8
Distance moved, locomotor task time 20.80.91.6-0.51.31.3-0.3
Vertical activity count, locomotor time 20.20.20.30.60.50.30.5
Weight adjusted by age1.11.31.81.31.00.81.3
Seeking ratio, delayed vs. immediate footshock0.60.71.50.5-1.2-0.80.5
Locomotion in novel chamber3.23.97.5-0.72.72.7-0.6
Locomotion in novel chamber post-restriction1.01.22.4-0.21.51.6-0.1
Progressive ratio2.63.04.1-2.01.31.7-1.8
Food seeking constrained by brief footshock0.50.60.7-0.80.60.8-0.9
Seeking ratio, punishment vs. effort0.70.81.21.1-0.8-0.90.9
Run reversals in cocaine runway, females0.40.40.70.30.80.80.2
Run reversals in cocaine runway, males0.30.30.4-0.50.40.6-0.6
Latency to leave start box in cocaine runway1.11.21.31.01.11.11.1
Latency to leave start box in cocaine runway, F1.21.32.81.70.1-0.11.6
Latency to leave start box in cocaine runway, M2.62.55.0-0.82.02.2-0.6
Cd content in liver0.40.40.60.7-0.5-0.60.8
Co content in liver0.10.20.30.1-0.5-0.50.2
Cu content in liver0.20.20.50.2-0.7-0.70.1
Fe content in liver2.83.35.51.3-2.3-2.31.1
K content in liver0.40.40.60.50.80.60.5
Mg content in liver0.30.30.60.80.2-0.00.8
Mn content in liver0.30.30.70.10.60.80.5
Na content in liver1.92.12.91.7-1.1-1.21.6
Rb content in liver1.82.23.6-1.11.71.9-1.1
Se content in liver0.00.00.1-0.10.20.2-0.2
Sr content in liver0.60.61.0-1.00.50.6-0.8
Zn content in liver0.00.00.10.20.30.00.1