Fscn2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000036700 0.02 0.02 4.8e-03 0.01 0.01 0.01 0.01 2.1e-02 6.9e-03 3.7e-02 1.2e-02
2 Brain mRNA stability ENSRNOG00000036700 0.07 0.04 3.9e-05 0.03 0.04 0.04 0.04 4.8e-04 1.1e-04 1.4e-04 1.5e-04
3 PL mRNA stability ENSRNOG00000036700 0.05 0.03 6.9e-04 0.02 0.04 0.03 0.03 5.7e-03 6.2e-04 1.4e-03 2.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.20.61.40.50.1-1.2
BMI without tail1.53.17.71.2-0.1-2.8
Body weight3.314.019.23.7-3.0-4.4
Epididymis fat weight0.51.22.31.0-0.5-1.5
Glucose0.60.92.3-0.50.21.5
Heart weight0.30.40.70.6-0.3-0.8
Left kidney weight0.41.22.11.1-1.4-0.6
Right kidney weight0.10.30.80.5-0.9-0.1
Tail length3.610.916.63.1-2.6-4.1
Length with tail3.613.113.23.6-3.6-3.6
Length without tail1.02.14.31.4-2.1-0.3
Liver weight, left0.10.20.50.5-0.7-0.1
Liver weight, right3.05.05.62.2-2.4-2.1
Parametrial fat weight1.63.24.01.8-1.6-2.0
Retroperitoneal fat weight3.511.717.53.4-2.5-4.2
Intraocular pressure0.10.20.50.3-0.1-0.7
Extensor digitorum longus weight0.31.02.2-0.91.50.1
Soleus weight1.23.44.41.8-1.7-2.1
Tibialis anterior weight0.00.10.1-0.30.30.0
Tibia length12.134.035.25.9-5.7-5.9
Number of licking bursts0.00.00.10.1-0.2-0.3
Food consumed during 24 hour testing period0.30.30.60.6-0.3-0.8
Times rat made contact with spout2.42.83.11.8-1.7-1.5
Mean time between licks in bursts1.62.22.7-1.51.31.6
Mean num. licks in bursts0.40.50.60.8-0.6-0.6
Std. dev. time between licks in bursts0.50.61.3-0.71.2-0.2
Water consumed over 24 hours0.30.30.60.6-0.8-0.2
Indifference point 0 sec0.10.10.20.3-0.0-0.4
Indifference point AUC0.00.00.1-0.20.20.2
Indifference point function ln k0.91.31.3-1.11.11.1
Indifference point function log k0.91.31.3-1.11.11.1
Delay discounting total patch changes 0 sec0.00.10.10.10.3-0.3
Delay discounting total patch changes 12 sec0.00.00.10.2-0.2-0.2
Delay discounting total patch changes 18 sec0.70.91.6-0.91.30.5
Delay discounting total patch changes 24 sec0.30.40.80.6-0.2-0.9
Delay discounting total patch changes 6 sec0.61.01.01.0-1.0-0.9
Delay discounting time to switch 0 sec0.20.40.6-0.60.40.8
Delay discounting water rate 0 sec1.01.53.21.1-0.5-1.8
Delay discounting water rate 12 sec0.30.40.9-0.50.9-0.1
Delay discounting water rate 18 sec0.10.20.40.10.3-0.6
Delay discounting water rate 24 sec0.50.71.30.10.8-1.2
Delay discounting water rate 6 sec0.00.10.2-0.20.4-0.1
Locomotor activity0.50.81.0-0.80.81.0
Locomotor testing distance0.91.61.8-1.21.31.2
Locomotor testing rearing0.60.91.4-0.91.20.7
Light reinforcement 10.30.51.30.5-0.0-1.1
Light reinforcement 21.52.03.01.3-1.1-1.7
Reaction time number correct2.23.25.8-1.82.40.6
Reaction time mean minus median0.20.20.50.4-0.7-0.0
Reaction time mean minus median AUC0.20.30.50.5-0.7-0.2
Reaction time num false alarms0.30.40.4-0.60.60.6
Reaction time num false alarms AUC0.71.01.1-1.01.01.0
Reaction time trials correct on left2.23.25.8-1.82.40.6
Reaction time trials on left2.33.26.0-1.82.40.6
Reaction time mean0.10.10.30.3-0.1-0.5
Reaction time mean AUC0.00.10.10.10.2-0.4
Median of all reaction times0.10.10.20.10.2-0.5
Reaction time omissions0.00.00.10.10.2-0.3
Reaction time false alarm rate0.10.20.30.0-0.30.6
Reaction time premature initiation rate1.31.82.1-1.31.21.4
Reaction time premature initiations2.94.25.6-2.12.41.6
Std. dev. reaction times0.30.40.4-0.60.60.7
Reaction time trials completed2.33.26.0-1.82.40.6
Reaction time trials AUC2.13.15.7-1.82.40.6
Social response proportion0.80.80.9-0.91.00.8
Social responses0.10.20.2-0.40.50.3
Social time0.20.30.4-0.50.60.4
Conditioned locomotion2.12.54.41.4-0.9-2.1
Cocaine response after cond. corrected0.00.00.0-0.00.20.1
Cocaine response after cond. not corrected0.30.30.5-0.50.50.7
Cocaine response before conditioning0.80.91.3-1.00.71.1
Saline control response2.73.74.71.9-1.6-2.2
Condit. Reinf. active minus inactive responses0.50.70.90.8-0.7-0.9
Condit. Reinf. active-inactive response ratio2.72.92.91.7-1.7-1.7
Condit. Reinf. active responses0.00.00.1-0.00.2-0.3
Condit. Reinf. inactive responses1.21.52.0-1.21.41.0
Condit. Reinf. lever presses0.20.30.6-0.30.8-0.2
Condit. Reinf. lever reinforcers received0.10.20.5-0.30.7-0.2
Pavlov. Cond. lever latency0.20.30.50.2-0.70.5
Pavlov. Cond. magazine entry latency3.84.45.6-2.12.41.7
Pavlov. Cond. change in total contacts1.21.73.1-1.21.80.7
Pavlov. Cond. index score1.21.63.0-1.21.70.6
Pavlov. Cond. latency score1.11.42.8-1.11.70.5
Pavlov. Cond. lever contacts0.20.30.4-0.10.7-0.7
Pavlov. Cond. magazine entry number3.13.85.52.0-2.3-1.5
Pavlov. Cond. intertrial magazine entries1.41.82.21.3-1.2-1.5
Pavlov. Cond. lever-magazine prob. diff.1.51.93.5-1.31.90.8
Pavlov. Cond. response bias0.50.71.6-0.81.30.1
Conditioned reinforcement - actives0.00.00.0-0.10.1-0.1
Conditioned reinforcement - inactives1.51.72.01.3-1.1-1.4
Conditioned locomotion0.20.20.20.4-0.5-0.4
Intermittent access intake day 1-15 change0.70.70.90.9-0.7-0.9
Intermittent access intake escalation0.50.50.70.7-0.5-0.8
Intermittent access intake escalation 22.82.83.11.8-1.6-1.7
Intermitt. access day 1 inactive lever presses1.31.41.81.2-0.9-1.3
Intermitt. access day 15 inactive lever presses0.50.61.10.7-0.4-1.1
Intermitt. access escalation Index0.20.20.50.3-0.1-0.7
Intermittent access day 1 total infusions0.20.20.30.4-0.4-0.6
Intermittent access day 15 total infusions0.40.50.80.7-0.5-0.9
Intermittent access terminal intake (last 3 days)1.31.41.71.2-1.0-1.3
Intermittent access total infusions0.40.40.60.6-0.5-0.8
Intermittent access day 1 locomotion0.20.20.30.4-0.3-0.6
Intermittent access day 15 total locomotion0.80.81.00.9-1.0-0.8
Intermittent access total locomotion0.50.60.60.8-0.7-0.8
Intermittent access standard deviation0.10.10.10.4-0.40.1
Cocaine induced anxiety6.17.18.02.8-2.3-2.8
Post-drug Anxiety0.70.81.01.0-0.7-0.9
Baseline Anxiety8.28.710.8-3.02.53.3
Lifetime Intake0.10.10.20.3-0.4-0.4
Incentive Sensitization - Responses0.20.20.20.4-0.5-0.4
Incentive Sensitization - Breakpoint0.20.20.30.4-0.5-0.4
Progressive ratio test 1 active lever presses0.80.81.20.9-0.7-1.1
Progressive ratio test 1 breakpoint1.11.11.61.0-0.8-1.3
Progressive ratio test 1 inactive lever presses1.71.83.01.3-0.8-1.7
Progressive ratio test 2 active lever presses0.50.50.60.7-0.8-0.7
Progressive ratio test 2 breakpoint0.40.40.50.6-0.6-0.7
Progressive ratio test 2 inactive lever presses0.60.70.70.8-0.8-0.8
Total sessions with >9 infusions0.10.20.3-0.40.10.6
Short access day 1 total inactive lever presses0.10.10.1-0.30.20.2
Short access day 10 total inactive lever presses3.23.54.51.9-1.6-2.1
Short access day 1 total infusions1.11.21.8-1.10.81.3
Short access day 10 total infusions0.70.80.80.9-0.9-0.9
Short access total infusions0.00.00.00.0-0.10.0
Short access day 1 locomotion0.10.10.2-0.0-0.40.4
Short access day 10 total locomotion0.20.20.50.5-0.7-0.0
Short access total locomotion0.10.10.20.0-0.50.4
Compulsive drug intake0.20.10.40.30.1-0.6
One hour access (0.3 mA shock)0.80.91.50.9-0.7-1.2
One hour access (shock baseline)0.10.20.20.3-0.5-0.4
Number of responses in last shaping day1.01.01.21.0-0.9-1.1
Context. condit. distance diff. score0.40.41.0-0.61.0-0.2
Locomotion velocity, session 10.80.81.9-0.70.21.4
Locomotion distance, session 13.74.85.1-2.32.12.2
Locomotion velocity, session 23.13.76.0-1.91.22.4
Locomotion distance, session 21.01.41.6-1.31.21.0
Locomotion velocity, session 30.81.01.7-0.90.61.3
Locomotion distance, session 32.83.03.9-1.71.52.0
Stereotopy head waving bouts, day 30.20.20.5-0.30.00.7
Stereotopy head waving duration, day 30.10.20.3-0.40.20.6
Locomotion velocity, session 70.80.90.9-1.01.01.0
Locomotion distance, session 75.26.77.6-2.72.82.3
Stereotopy head waving bouts, day 70.10.10.20.3-0.1-0.4
Stereotopy head waving duration, day 70.60.70.80.9-0.9-0.8
Locomotion velocity, session 81.51.82.2-1.41.51.1
Locomotion distance, session 81.42.24.0-1.52.00.5
Degree of sensitization distance0.10.10.2-0.00.3-0.4
Degree of sensitization stereotypy0.20.20.50.4-0.1-0.7
Condit. Reinf. active minus inactive responses1.61.72.71.3-0.9-1.7
Condit. Reinf. active-inactive response ratio0.60.71.20.8-0.4-1.1
Condit. Reinf. active responses2.83.45.21.8-1.4-2.3
Condit. Reinf. inactive responses0.70.81.20.8-0.7-1.1
Incentive salience index mean1.31.52.31.2-0.9-1.5
Condit. Reinf. lever presses0.00.00.1-0.20.30.0
Time in familiar zone, hab. session 10.00.00.0-0.00.10.1
Time in novel zone, hab. session 10.00.00.0-0.10.1-0.0
Total zone transitions, hab. session 10.81.11.5-1.11.20.8
Total locomotion distance, hab. session 10.20.30.8-0.40.9-0.1
Locomotion velocity, hab. session 10.20.30.7-0.30.8-0.1
Time in familiar zone, hab. session 20.70.71.1-0.81.00.6
Time in novel zone, hab. session 20.00.00.1-0.1-0.20.2
Total zone transitions, hab. session 21.62.02.9-1.51.70.9
Total locomotion distance, hab. session 20.30.51.0-0.61.0-0.1
Locomotion velocity, hab. session 20.20.30.5-0.30.7-0.4
Novel to familiar place preference ratio3.43.64.02.0-1.7-2.0
Novelty place preference3.53.64.02.0-1.7-1.9
Time in novel zone, NPP test2.62.73.01.7-1.5-1.7
Total zone transitions, NPP test2.23.14.2-1.92.01.3
Total locomotion distance, NPP test1.11.52.8-1.31.70.4
Locomotion velocity, NPP test0.60.81.6-0.91.30.1
Pavlov. Cond. lever latency3.54.46.6-2.12.61.5
Pavlov. Cond. magazine entry latency4.15.35.82.4-2.4-2.1
Pavlov. Cond. change in total contacts1.11.21.41.2-1.2-0.8
Pavlov. Cond. index score5.36.87.52.7-2.7-2.4
Pavlov. Cond. latency score5.16.57.92.6-2.8-2.2
Pavlov. Cond. lever contacts2.12.53.41.6-1.9-1.2
Pavlov. Cond. magazine entry number4.35.46.2-2.52.52.0
Pavlov. Cond. intertrial magazine entries0.10.10.3-0.20.5-0.2
Pavlov. Cond. lever-magazine prob. diff.5.46.87.22.7-2.7-2.4
Pavlov. Cond. response bias4.35.26.12.4-2.5-2.0
Bone: apparent density0.00.10.20.20.0-0.4
Bone surface0.40.70.80.8-0.9-0.8
Bone volume0.20.30.50.6-0.5-0.7
Bone: connectivity density0.10.10.2-0.50.40.3
Bone: cortical apparent density2.12.73.6-1.61.41.9
Bone: cortical area7.210.912.63.4-3.0-3.6
Bone: cortical porosity3.13.44.22.0-2.0-1.4
Bone: cortical porosity2.93.13.71.9-1.9-1.5
Bone: cortical thickness7.111.712.43.5-3.3-3.5
Bone: cortical thickness2.02.32.81.6-1.3-1.7
Bone: cortical tissue density2.43.14.1-1.71.52.0
Bone: elastic displacement1.92.22.41.5-1.3-1.5
Bone: elastic work10.413.514.73.8-3.5-3.7
Bone: endosteal estimation0.20.50.9-0.70.90.2
Bone: endosteal perimeter0.81.61.81.3-1.2-1.4
Bone: final force5.58.911.53.0-2.5-3.4
Bone: final moment6.610.813.73.3-2.8-3.7
Bone: marrow area0.20.50.9-0.70.90.2
Bone: maximum diameter2.03.63.81.9-1.8-2.0
Bone: maximum force5.18.811.63.0-2.5-3.4
Bone: maximum moment6.110.613.73.3-2.7-3.7
Bone: minimum diameter3.86.98.42.7-2.3-2.9
Bone: periosteal estimation1.73.44.81.8-1.4-2.2
Bone: periosteal perimeter5.48.99.43.1-3.0-2.8
Bone: post-yield work0.20.30.4-0.60.70.3
Bone: stiffness0.50.81.20.9-0.7-1.1
Bone: tissue strength0.60.61.10.7-0.4-1.1
Bone: trabecular number0.00.00.00.0-0.1-0.0
Bone: trabecular spacing0.91.12.4-1.01.60.1
Bone: trabecular thickness1.72.02.71.5-1.6-1.0
Bone: trabecular tissue density0.71.01.3-1.00.81.2
Breakpoint value in progressive ratio session0.50.60.70.9-0.5-0.9
Distance traveled before self-admin1.81.92.31.5-1.1-1.5
Distance traveled after self-admin0.10.20.30.10.3-0.6
Delta time in closed arm before/after self-admin0.10.10.30.1-0.50.2
Delta time in open arm before/after self-admin0.30.30.7-0.40.8-0.0
Diff in mean of infusions in LGA sessions0.10.10.1-0.20.20.3
Extinction: sum of active levers before priming0.80.81.1-0.80.81.0
Active lever presses in extinction session 60.00.00.00.20.10.0
Delta distance traveled before/after self-admin1.31.41.9-1.31.40.9
Delta ambulatory time before/after self-admin2.32.52.7-1.71.61.5
Time in closed arm before self-admin0.00.00.00.0-0.10.2
Time in closed arm after self-admin0.30.30.60.2-0.80.5
Time in open arm before self-admin0.10.10.1-0.1-0.30.3
Time in open arm after self-admin0.40.40.6-0.60.80.4
Sum of active levers in priming session hrs 5-60.40.40.80.60.0-0.9
Time to tail flick, vehicle, before self-admin0.00.00.00.1-0.1-0.2
Time to tail flick, vehicle, after self-admin1.61.72.7-1.30.81.7
Time to tail flick, test, before self-admin0.20.20.30.4-0.6-0.2
Time to tail flick, test, after self-admin0.10.10.2-0.2-0.00.4
Delta time to tail flick, vehicle, before/after SA0.60.50.6-0.80.70.7
Delta time to tail flick, test, before/after SA0.20.20.3-0.30.30.6
Ambulatory time before self-admin2.93.13.91.8-1.4-2.0
Ambulatory time after self-admin0.10.10.30.20.1-0.5
Total heroin consumption0.20.30.40.7-0.4-0.5
Area under the delay curve1.81.92.3-1.41.21.5
Delay disc. indifference point, 0s delay0.00.00.0-0.10.10.1
Delay disc. indifference point, 16s delay3.83.94.5-2.02.11.7
Delay disc. indifference point, 2s delay0.20.20.3-0.40.30.6
Delay disc. indifference point, 24s delay3.43.35.0-1.71.42.2
Delay disc. indifference point, 4s delay0.30.30.5-0.50.30.7
Delay disc. indifference point, 8s delay0.40.40.8-0.60.40.9
Delay discount exponential model param2.12.33.01.5-1.3-1.7
Delay discount hyperbolic model param2.02.22.91.4-1.2-1.7
Fecal boli incidents, locomotor time 10.70.70.8-0.90.70.9
Change in fecal boli incidents, locomotor task0.50.51.2-0.50.21.1
Time >=10cm from walls, locomotor time 10.00.00.0-0.20.2-0.2
Bouts of movement, locomotor time 11.51.72.2-1.31.11.5
Total resting periods, locomotor time 11.41.52.4-1.20.91.5
Rest time, locomotor task time 10.00.10.10.1-0.30.2
Distance moved, locomotor task time 10.20.20.50.4-0.2-0.7
Vertical activity count, locomotor time 10.30.30.70.3-0.0-0.8
Time >=10cm from walls, locomotor time 20.10.10.30.2-0.60.0
Bouts of movement, locomotor time 21.61.72.0-1.41.21.4
Total resting periods, locomotor time 21.31.41.6-1.21.11.2
Rest time, locomotor task time 20.00.00.1-0.1-0.20.2
Distance moved, locomotor task time 20.00.00.00.1-0.1-0.1
Vertical activity count, locomotor time 20.10.10.2-0.30.4-0.0
Weight adjusted by age2.83.14.31.8-1.3-2.1
Seeking ratio, delayed vs. immediate footshock1.31.51.91.2-1.1-1.4
Locomotion in novel chamber0.40.50.7-0.70.90.6
Locomotion in novel chamber post-restriction2.12.52.81.5-1.5-1.7
Progressive ratio0.40.40.6-0.60.60.7
Food seeking constrained by brief footshock0.00.00.1-0.00.00.2
Seeking ratio, punishment vs. effort0.10.10.20.2-0.1-0.4
Run reversals in cocaine runway, females2.12.12.9-1.51.71.1
Run reversals in cocaine runway, males2.72.63.01.7-1.7-1.4
Latency to leave start box in cocaine runway0.40.50.5-0.70.60.7
Latency to leave start box in cocaine runway, F0.70.81.0-1.00.90.8
Latency to leave start box in cocaine runway, M0.10.10.10.3-0.4-0.2
Cd content in liver2.83.03.3-1.71.81.6
Co content in liver0.20.20.4-0.40.60.3
Cu content in liver1.31.52.01.3-1.4-0.9
Fe content in liver1.11.31.4-1.11.11.2
K content in liver1.21.21.91.0-0.9-1.4
Mg content in liver0.10.20.3-0.50.50.0
Mn content in liver0.50.60.80.7-0.9-0.6
Na content in liver0.10.10.20.3-0.4-0.2
Rb content in liver0.20.20.60.30.0-0.7
Se content in liver0.10.20.30.4-0.2-0.6
Sr content in liver0.40.40.70.6-0.8-0.1
Zn content in liver0.30.30.80.4-0.9-0.0