P4hb

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000036689 0.08 0.06 3.7e-03 0.03 0.04 0.03 0.02 1.5e-02 5.7e-03 1.3e-02 2.9e-02
2 Liver gene expression ENSRNOG00000036689 0.04 0.03 2.4e-05 0.04 0.03 0.03 0.03 2.9e-05 1.1e-04 2.7e-04 2.1e-04
3 Liver isoform ratio ENSRNOT00000054958 0.02 0.02 4.9e-03 0.02 0.02 0.02 0.02 9.6e-04 1.7e-03 5.6e-03 1.6e-03
4 Liver isoform ratio ENSRNOT00000100112 0.02 0.02 3.8e-03 0.02 0.02 0.02 0.02 1.5e-03 1.8e-03 3.6e-03 1.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.62.12.8-1.70.91.5-1.5
BMI without tail5.411.315.8-4.01.43.6-3.8
Body weight3.113.322.9-1.5-2.44.8-4.7
Epididymis fat weight1.02.43.8-1.4-0.11.9-1.9
Glucose3.96.010.53.20.2-2.62.6
Heart weight0.20.30.5-0.30.20.7-0.7
Left kidney weight0.41.23.51.1-1.90.4-0.3
Right kidney weight0.20.72.30.6-1.5-0.00.1
Tail length4.513.722.8-2.5-1.94.7-4.8
Length with tail2.710.014.30.3-3.83.6-3.5
Length without tail2.24.99.73.1-3.1-0.40.5
Liver weight, left0.50.82.11.5-0.7-0.40.5
Liver weight, right2.54.17.40.2-2.72.2-2.1
Parametrial fat weight1.42.74.4-0.4-1.42.1-2.1
Retroperitoneal fat weight3.411.420.7-1.7-1.54.5-4.5
Intraocular pressure0.50.71.0-0.90.41.0-1.0
Extensor digitorum longus weight0.62.35.7-2.41.70.6-0.6
Soleus weight1.13.25.3-0.7-1.42.3-2.3
Tibialis anterior weight0.10.30.9-1.00.30.3-0.3
Tibia length7.220.227.51.2-4.95.2-5.2
Number of licking bursts0.20.30.4-0.6-0.50.5-0.5
Food consumed during 24 hour testing period0.30.40.7-0.5-0.10.9-0.8
Times rat made contact with spout1.21.42.61.2-1.60.9-0.9
Mean time between licks in bursts1.11.52.40.01.1-1.61.6
Mean num. licks in bursts0.20.20.90.9-0.20.2-0.2
Std. dev. time between licks in bursts2.63.17.7-2.81.51.1-1.1
Water consumed over 24 hours0.60.71.51.2-1.1-0.30.3
Indifference point 0 sec0.00.10.1-0.20.20.3-0.3
Indifference point AUC0.00.00.1-0.20.3-0.10.1
Indifference point function ln k0.50.81.1-0.21.1-1.01.0
Indifference point function log k0.50.81.1-0.21.1-1.01.0
Delay discounting total patch changes 0 sec0.10.20.4-0.50.60.4-0.3
Delay discounting total patch changes 12 sec0.00.00.10.30.0-0.10.1
Delay discounting total patch changes 18 sec0.81.02.7-1.11.6-0.00.0
Delay discounting total patch changes 24 sec0.60.71.2-0.70.21.1-1.0
Delay discounting total patch changes 6 sec0.30.50.90.4-0.90.6-0.6
Delay discounting time to switch 0 sec0.30.40.70.50.3-0.80.8
Delay discounting water rate 0 sec1.93.04.7-1.60.12.2-2.2
Delay discounting water rate 12 sec0.91.32.5-1.61.40.7-0.7
Delay discounting water rate 18 sec1.21.62.9-1.70.51.3-1.2
Delay discounting water rate 24 sec3.54.87.5-2.71.72.1-2.1
Delay discounting water rate 6 sec0.30.40.9-1.00.30.5-0.5
Locomotor activity0.40.61.10.30.6-1.01.0
Locomotor testing distance0.40.61.1-0.41.1-0.70.8
Locomotor testing rearing0.30.41.1-0.71.1-0.20.3
Light reinforcement 11.42.53.6-1.90.21.8-1.7
Light reinforcement 22.02.74.3-1.1-1.02.1-2.0
Reaction time number correct3.95.513.6-3.72.70.8-0.8
Reaction time mean minus median0.50.71.41.2-1.0-0.30.3
Reaction time mean minus median AUC0.40.51.80.6-1.30.2-0.2
Reaction time num false alarms0.30.40.8-0.00.9-0.60.6
Reaction time num false alarms AUC0.40.60.9-0.11.0-0.80.9
Reaction time trials correct on left3.95.513.6-3.72.70.8-0.8
Reaction time trials on left4.05.714.1-3.82.70.9-0.9
Reaction time mean0.30.30.6-0.50.10.8-0.7
Reaction time mean AUC0.40.60.9-0.90.30.8-0.8
Median of all reaction times0.40.60.8-0.90.60.8-0.8
Reaction time omissions0.40.60.8-0.90.10.9-0.8
Reaction time false alarm rate1.01.52.91.7-0.4-1.21.2
Reaction time premature initiation rate1.11.42.10.31.2-1.41.4
Reaction time premature initiations1.92.66.2-1.72.5-0.80.8
Std. dev. reaction times0.10.20.20.00.4-0.50.5
Reaction time trials completed4.05.714.1-3.82.70.9-0.9
Reaction time trials AUC3.95.614.0-3.72.60.9-0.9
Social response proportion0.30.30.6-0.50.8-0.50.5
Social responses0.00.10.2-0.40.1-0.10.1
Social time0.10.20.2-0.50.5-0.30.3
Conditioned locomotion3.74.47.2-1.7-0.62.7-2.7
Cocaine response after cond. corrected0.20.20.40.50.7-0.30.3
Cocaine response after cond. not corrected0.60.60.80.60.8-0.90.9
Cocaine response before conditioning0.40.40.8-0.20.2-0.90.9
Saline control response2.33.05.0-0.6-1.42.2-2.2
Condit. Reinf. active minus inactive responses0.70.81.4-0.4-0.71.1-1.2
Condit. Reinf. active-inactive response ratio1.81.92.60.3-1.61.5-1.6
Condit. Reinf. active responses0.30.40.6-0.80.40.6-0.6
Condit. Reinf. inactive responses0.81.02.5-0.71.6-0.70.7
Condit. Reinf. lever presses0.71.01.8-1.31.10.7-0.7
Condit. Reinf. lever reinforcers received0.60.91.5-1.21.10.7-0.7
Pavlov. Cond. lever latency1.31.83.31.8-1.1-1.21.2
Pavlov. Cond. magazine entry latency2.32.76.1-1.42.5-1.21.2
Pavlov. Cond. change in total contacts1.31.84.5-1.62.1-0.10.1
Pavlov. Cond. index score1.41.84.6-1.62.10.0-0.0
Pavlov. Cond. latency score1.41.84.2-1.72.00.1-0.1
Pavlov. Cond. lever contacts1.62.24.1-2.01.11.4-1.4
Pavlov. Cond. magazine entry number2.12.56.31.5-2.50.8-0.9
Pavlov. Cond. intertrial magazine entries1.21.62.6-0.5-1.01.6-1.6
Pavlov. Cond. lever-magazine prob. diff.1.52.05.3-1.62.3-0.10.2
Pavlov. Cond. response bias1.11.53.0-1.71.60.5-0.5
Conditioned reinforcement - actives0.30.30.5-0.7-0.40.5-0.5
Conditioned reinforcement - inactives1.41.62.7-0.1-1.11.6-1.6
Conditioned locomotion0.50.61.4-0.2-1.20.8-0.7
Intermittent access intake day 1-15 change0.40.40.70.1-0.50.8-0.9
Intermittent access intake escalation0.40.40.8-0.2-0.30.9-0.9
Intermittent access intake escalation 21.51.52.00.7-1.31.4-1.4
Intermitt. access day 1 inactive lever presses0.70.81.40.1-0.41.2-1.2
Intermitt. access day 15 inactive lever presses1.61.83.1-1.0-0.41.8-1.7
Intermitt. access escalation Index1.51.41.9-1.3-0.31.4-1.3
Intermittent access day 1 total infusions0.10.20.3-0.3-0.20.5-0.5
Intermittent access day 15 total infusions0.60.71.2-0.6-0.31.1-1.1
Intermittent access terminal intake (last 3 days)1.11.21.9-0.3-1.01.4-1.4
Intermittent access total infusions0.40.50.8-0.5-0.40.9-0.9
Intermittent access day 1 locomotion0.60.60.9-0.7-0.40.9-0.9
Intermittent access day 15 total locomotion0.60.61.50.3-1.20.7-0.7
Intermittent access total locomotion0.60.71.0-0.2-0.91.0-1.0
Intermittent access standard deviation0.70.82.21.5-0.2-0.70.7
Cocaine induced anxiety2.63.04.61.1-1.42.1-2.1
Post-drug Anxiety0.30.30.60.8-0.00.5-0.5
Baseline Anxiety4.64.98.4-0.11.7-2.92.9
Lifetime Intake0.20.20.3-0.2-0.40.5-0.5
Incentive Sensitization - Responses0.10.10.30.0-0.50.3-0.3
Incentive Sensitization - Breakpoint0.10.10.40.2-0.60.2-0.3
Progressive ratio test 1 active lever presses0.91.01.6-0.6-0.61.3-1.3
Progressive ratio test 1 breakpoint1.11.12.0-0.7-0.61.4-1.4
Progressive ratio test 1 inactive lever presses2.42.64.4-1.1-0.42.1-2.1
Progressive ratio test 2 active lever presses0.40.40.90.0-0.90.7-0.7
Progressive ratio test 2 breakpoint0.50.50.7-0.4-0.80.8-0.8
Progressive ratio test 2 inactive lever presses0.50.50.70.2-0.80.9-0.8
Total sessions with >9 infusions0.20.20.40.1-0.7-0.30.3
Short access day 1 total inactive lever presses0.30.40.9-0.9-0.40.5-0.5
Short access day 10 total inactive lever presses1.92.13.6-0.2-1.11.9-1.9
Short access day 1 total infusions0.80.91.60.50.2-1.21.3
Short access day 10 total infusions0.40.40.60.1-0.70.7-0.7
Short access total infusions0.00.00.10.1-0.2-0.00.0
Short access day 1 locomotion0.80.81.11.0-1.0-0.80.8
Short access day 10 total locomotion0.70.81.61.3-1.1-0.40.4
Short access total locomotion1.01.01.41.2-1.2-0.80.8
Compulsive drug intake0.70.70.9-0.80.60.9-0.9
One hour access (0.3 mA shock)1.01.22.0-0.8-0.41.4-1.4
One hour access (shock baseline)0.30.40.9-0.4-0.90.5-0.5
Number of responses in last shaping day1.71.82.7-0.5-1.31.6-1.5
Context. condit. distance diff. score1.82.25.3-2.31.31.0-1.0
Locomotion velocity, session 12.72.94.01.90.0-2.02.0
Locomotion distance, session 12.12.83.8-0.81.9-1.81.8
Locomotion velocity, session 23.64.27.41.20.6-2.72.7
Locomotion distance, session 20.50.81.3-1.01.2-0.60.6
Locomotion velocity, session 31.51.82.81.10.5-1.71.7
Locomotion distance, session 32.42.64.30.51.3-2.12.1
Stereotopy head waving bouts, day 30.60.71.11.0-0.2-1.01.0
Stereotopy head waving duration, day 30.30.30.50.5-0.1-0.70.7
Locomotion velocity, session 70.50.60.8-0.20.9-0.90.9
Locomotion distance, session 72.83.66.6-1.32.6-1.71.7
Stereotopy head waving bouts, day 70.10.10.2-0.30.10.5-0.5
Stereotopy head waving duration, day 70.40.50.80.1-0.90.7-0.7
Locomotion velocity, session 81.01.12.2-1.31.5-0.60.6
Locomotion distance, session 82.74.010.3-3.22.20.6-0.6
Degree of sensitization distance0.90.91.7-1.30.40.9-0.9
Degree of sensitization stereotypy0.40.40.7-0.60.20.8-0.8
Condit. Reinf. active minus inactive responses1.71.93.3-0.8-0.51.8-1.8
Condit. Reinf. active-inactive response ratio0.80.81.4-0.6-0.11.2-1.2
Condit. Reinf. active responses3.13.76.5-1.2-0.92.5-2.5
Condit. Reinf. inactive responses0.70.91.6-0.6-0.41.2-1.2
Incentive salience index mean1.51.72.9-0.9-0.61.7-1.7
Condit. Reinf. lever presses0.10.20.6-0.80.10.2-0.2
Time in familiar zone, hab. session 10.10.10.20.40.3-0.30.2
Time in novel zone, hab. session 10.00.00.1-0.4-0.00.2-0.2
Total zone transitions, hab. session 10.60.82.1-0.71.5-0.60.6
Total locomotion distance, hab. session 10.81.11.9-1.41.40.5-0.5
Locomotion velocity, hab. session 10.71.12.0-1.41.30.6-0.5
Time in familiar zone, hab. session 20.60.61.6-0.61.3-0.40.4
Time in novel zone, hab. session 20.10.10.30.3-0.6-0.20.2
Total zone transitions, hab. session 21.41.83.7-1.91.8-0.30.2
Total locomotion distance, hab. session 21.62.15.5-2.31.20.9-0.9
Locomotion velocity, hab. session 21.62.25.3-2.30.91.2-1.2
Novel to familiar place preference ratio1.81.82.60.7-1.31.6-1.6
Novelty place preference1.81.82.40.8-1.41.5-1.6
Time in novel zone, NPP test1.31.42.00.6-1.11.4-1.4
Total zone transitions, NPP test1.72.45.1-2.32.1-0.40.4
Total locomotion distance, NPP test2.12.97.5-2.71.80.5-0.5
Locomotion velocity, NPP test1.62.35.7-2.41.50.7-0.7
Pavlov. Cond. lever latency2.63.38.1-2.02.8-0.80.8
Pavlov. Cond. magazine entry latency1.92.43.41.3-1.81.5-1.5
Pavlov. Cond. change in total contacts0.70.82.21.5-0.90.2-0.2
Pavlov. Cond. index score2.93.76.31.1-2.51.9-1.9
Pavlov. Cond. latency score2.93.77.61.5-2.71.6-1.6
Pavlov. Cond. lever contacts1.41.74.11.1-2.00.8-0.8
Pavlov. Cond. magazine entry number2.12.64.0-1.92.0-1.21.2
Pavlov. Cond. intertrial magazine entries0.70.81.9-1.40.60.7-0.7
Pavlov. Cond. lever-magazine prob. diff.2.93.65.61.1-2.42.0-1.9
Pavlov. Cond. response bias2.22.74.81.6-2.21.3-1.3
Bone: apparent density0.20.30.5-0.70.10.6-0.6
Bone surface0.30.50.90.1-0.90.7-0.7
Bone volume0.20.30.6-0.4-0.40.8-0.7
Bone: connectivity density0.10.20.7-0.80.00.1-0.1
Bone: cortical apparent density2.12.74.40.71.2-2.12.1
Bone: cortical area4.67.011.6-0.1-2.33.4-3.4
Bone: cortical porosity2.02.14.82.2-1.80.6-0.6
Bone: cortical porosity1.51.72.81.7-1.50.9-0.8
Bone: cortical thickness3.96.49.20.7-2.73.0-3.0
Bone: cortical thickness1.11.32.30.1-0.81.5-1.5
Bone: cortical tissue density2.43.15.00.81.3-2.22.2
Bone: elastic displacement0.91.11.50.3-1.11.2-1.2
Bone: elastic work4.96.48.51.3-2.72.9-2.9
Bone: endosteal estimation0.40.92.0-1.41.20.2-0.3
Bone: endosteal perimeter0.51.11.8-0.2-0.91.4-1.3
Bone: final force4.06.511.5-0.6-1.63.4-3.4
Bone: final moment4.57.413.0-0.4-1.83.6-3.6
Bone: marrow area0.40.92.0-1.41.20.2-0.2
Bone: maximum diameter1.42.53.8-0.1-1.61.9-1.9
Bone: maximum force3.96.812.1-0.8-1.63.5-3.5
Bone: maximum moment4.47.613.5-0.6-1.83.7-3.7
Bone: minimum diameter2.44.47.8-0.2-1.52.8-2.7
Bone: periosteal estimation1.53.15.6-0.9-0.82.4-2.3
Bone: periosteal perimeter2.84.76.81.0-2.62.4-2.3
Bone: post-yield work0.20.30.9-1.00.60.1-0.1
Bone: stiffness0.60.91.7-0.6-0.41.3-1.3
Bone: tissue strength1.41.31.9-1.2-0.41.4-1.4
Bone: trabecular number0.00.00.1-0.1-0.30.1-0.1
Bone: trabecular spacing2.22.87.1-2.71.80.7-0.7
Bone: trabecular thickness1.11.33.01.7-1.40.4-0.4
Bone: trabecular tissue density0.60.91.50.30.7-1.21.2
Breakpoint value in progressive ratio session0.20.20.30.60.30.6-0.5
Distance traveled before self-admin0.70.71.20.6-0.51.1-1.0
Distance traveled after self-admin0.80.91.2-1.10.90.9-0.9
Delta time in closed arm before/after self-admin0.90.83.20.0-1.80.2-0.2
Delta time in open arm before/after self-admin0.90.92.5-0.81.60.4-0.3
Diff in mean of infusions in LGA sessions0.10.10.20.40.1-0.40.5
Extinction: sum of active levers before priming1.11.11.60.80.7-1.21.3
Active lever presses in extinction session 60.30.30.91.00.4-0.20.3
Delta distance traveled before/after self-admin0.90.91.9-1.31.4-0.30.3
Delta ambulatory time before/after self-admin0.91.01.7-1.01.3-0.90.8
Time in closed arm before self-admin0.70.81.21.00.6-1.11.0
Time in closed arm after self-admin2.32.44.12.0-1.3-1.41.3
Time in open arm before self-admin0.60.62.3-0.1-1.50.3-0.3
Time in open arm after self-admin0.30.40.7-0.90.80.2-0.1
Sum of active levers in priming session hrs 5-60.80.72.30.11.50.6-0.6
Time to tail flick, vehicle, before self-admin0.10.10.1-0.3-0.10.3-0.3
Time to tail flick, vehicle, after self-admin1.31.32.60.40.1-1.61.6
Time to tail flick, test, before self-admin0.20.20.40.5-0.70.0-0.1
Time to tail flick, test, after self-admin0.20.20.60.4-0.8-0.10.2
Delta time to tail flick, vehicle, before/after SA0.10.10.3-0.50.3-0.30.4
Delta time to tail flick, test, before/after SA0.40.30.50.7-0.0-0.60.7
Ambulatory time before self-admin1.31.42.60.3-0.61.6-1.5
Ambulatory time after self-admin0.50.50.7-0.70.60.8-0.8
Total heroin consumption0.20.30.80.9-0.00.4-0.2
Area under the delay curve1.51.62.20.31.4-1.51.5
Delay disc. indifference point, 0s delay0.00.00.0-0.00.10.00.0
Delay disc. indifference point, 16s delay1.91.94.8-1.12.2-0.90.9
Delay disc. indifference point, 2s delay0.20.30.30.40.5-0.60.6
Delay disc. indifference point, 24s delay4.03.96.31.31.1-2.52.5
Delay disc. indifference point, 4s delay0.60.71.20.50.4-1.11.0
Delay disc. indifference point, 8s delay1.11.11.71.00.5-1.31.3
Delay discount exponential model param2.22.33.6-0.6-1.31.9-1.9
Delay discount hyperbolic model param2.12.23.4-0.6-1.41.8-1.8
Fecal boli incidents, locomotor time 10.20.20.3-0.20.5-0.50.5
Change in fecal boli incidents, locomotor task3.02.84.11.80.2-2.02.0
Time >=10cm from walls, locomotor time 10.50.51.5-1.20.10.5-0.5
Bouts of movement, locomotor time 11.82.03.40.51.0-1.91.8
Total resting periods, locomotor time 12.42.74.80.90.7-2.22.1
Rest time, locomotor task time 10.50.60.90.9-0.4-0.80.8
Distance moved, locomotor task time 10.60.61.0-0.8-0.01.0-1.0
Vertical activity count, locomotor time 11.81.92.8-1.50.01.7-1.6
Time >=10cm from walls, locomotor time 20.40.41.50.2-1.2-0.00.0
Bouts of movement, locomotor time 21.11.22.0-0.11.1-1.41.4
Total resting periods, locomotor time 20.70.81.1-0.40.9-1.11.0
Rest time, locomotor task time 20.30.30.50.4-0.5-0.70.6
Distance moved, locomotor task time 20.10.10.2-0.2-0.30.4-0.4
Vertical activity count, locomotor time 20.60.61.3-1.20.20.8-0.7
Weight adjusted by age2.42.75.0-0.4-0.92.2-2.1
Seeking ratio, delayed vs. immediate footshock1.21.42.3-0.5-0.81.5-1.5
Locomotion in novel chamber0.20.20.5-0.60.7-0.10.1
Locomotion in novel chamber post-restriction1.01.21.9-0.1-1.21.3-1.4
Progressive ratio0.10.20.20.20.5-0.40.5
Food seeking constrained by brief footshock0.30.30.70.80.1-0.60.6
Seeking ratio, punishment vs. effort0.00.00.1-0.30.10.2-0.2
Run reversals in cocaine runway, females2.02.05.1-1.12.3-0.90.9
Run reversals in cocaine runway, males1.51.53.01.1-1.70.9-0.9
Latency to leave start box in cocaine runway0.20.20.4-0.40.6-0.50.5
Latency to leave start box in cocaine runway, F0.40.41.1-1.10.6-0.20.2
Latency to leave start box in cocaine runway, M0.10.10.20.4-0.3-0.30.2
Cd content in liver1.92.03.4-0.41.8-1.51.5
Co content in liver0.20.20.6-0.30.7-0.30.3
Cu content in liver0.91.12.21.5-1.40.3-0.3
Fe content in liver0.70.81.3-0.20.9-1.11.1
K content in liver2.02.03.0-1.2-0.91.7-1.7
Mg content in liver0.90.92.9-1.70.20.6-0.6
Mn content in liver0.40.51.10.3-1.10.6-0.6
Na content in liver0.10.10.40.3-0.60.1-0.0
Rb content in liver1.01.21.9-1.40.21.2-1.2
Se content in liver0.30.30.5-0.4-0.20.7-0.7
Sr content in liver1.21.13.41.8-0.7-0.50.6
Zn content in liver0.60.72.00.8-1.4-0.20.2