ENSRNOG00000036686

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000036686 0.09 0.06 3.8e-04 0.05 0.05 0.05 0.04 1.6e-03 1.0e-03 9.2e-04 2.7e-03
2 Liver gene expression ENSRNOG00000036686 0.23 0.12 9.2e-12 0.11 0.1 0.1 0.1 4.9e-12 4.3e-11 8.8e-11 6.1e-11
3 Liver mRNA stability ENSRNOG00000036686 0.11 0.07 4.1e-10 0.09 0.09 0.08 0.09 2.9e-10 8.0e-10 2.6e-09 1.1e-09
4 PL gene expression ENSRNOG00000036686 0.1 0.06 1.3e-06 0.07 0.08 0.08 0.09 8.8e-06 6.8e-07 1.3e-06 3.8e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.82.75.4-0.21.51.7-2.3
BMI without tail6.413.323.1-0.63.64.1-4.8
Body weight4.418.722.9-3.54.84.6-4.3
Epididymis fat weight1.43.35.2-0.81.91.9-2.3
Glucose3.75.79.20.0-2.6-2.63.0
Heart weight0.40.60.9-0.50.70.9-1.0
Left kidney weight0.10.41.3-1.20.40.20.4
Right kidney weight0.10.41.2-1.1-0.0-0.00.5
Tail length6.018.222.2-3.04.74.7-4.4
Length with tail2.910.814.0-3.73.63.3-2.3
Length without tail0.92.03.6-1.9-0.4-0.81.8
Liver weight, left0.20.30.5-0.6-0.4-0.50.7
Liver weight, right2.13.44.6-2.12.21.8-1.1
Parametrial fat weight2.14.24.4-2.12.12.1-1.9
Retroperitoneal fat weight5.217.120.7-2.84.54.6-4.4
Intraocular pressure0.50.70.9-0.51.00.8-0.9
Extensor digitorum longus weight0.31.22.81.10.60.7-1.7
Soleus weight1.54.35.3-1.72.32.3-2.0
Tibialis anterior weight0.00.10.20.40.30.4-0.5
Tibia length9.226.036.8-6.15.25.2-3.5
Number of licking bursts0.20.20.30.20.50.6-0.5
Food consumed during 24 hour testing period1.01.22.9-1.70.90.8-0.8
Times rat made contact with spout1.61.95.8-2.40.90.9-0.2
Mean time between licks in bursts1.72.43.01.7-1.6-1.61.3
Mean num. licks in bursts0.50.62.2-1.50.20.10.1
Std. dev. time between licks in bursts1.51.84.30.71.11.1-2.1
Water consumed over 24 hours0.70.92.6-1.6-0.3-0.30.9
Indifference point 0 sec0.10.20.30.50.30.4-0.5
Indifference point AUC0.00.00.0-0.0-0.1-0.1-0.1
Indifference point function ln k0.71.01.81.3-1.0-1.00.7
Indifference point function log k0.71.01.81.3-1.0-1.00.7
Delay discounting total patch changes 0 sec0.20.30.50.70.40.4-0.6
Delay discounting total patch changes 12 sec0.00.00.00.1-0.1-0.00.1
Delay discounting total patch changes 18 sec0.50.72.41.5-0.0-0.2-0.6
Delay discounting total patch changes 24 sec0.70.91.5-0.01.10.9-1.2
Delay discounting total patch changes 6 sec0.20.30.4-0.70.60.6-0.3
Delay discounting time to switch 0 sec0.40.71.10.4-0.8-0.91.0
Delay discounting water rate 0 sec2.43.85.7-0.62.22.1-2.4
Delay discounting water rate 12 sec0.50.71.60.60.70.6-1.3
Delay discounting water rate 18 sec1.01.32.30.21.31.2-1.5
Delay discounting water rate 24 sec3.04.18.40.22.11.9-2.9
Delay discounting water rate 6 sec0.10.20.40.10.50.4-0.6
Locomotor activity0.50.81.00.8-1.0-1.00.8
Locomotor testing distance0.50.81.21.1-0.7-1.10.4
Locomotor testing rearing0.20.41.11.0-0.2-0.6-0.0
Light reinforcement 11.52.84.4-0.31.81.9-2.1
Light reinforcement 22.83.74.8-1.42.12.2-2.0
Reaction time number correct1.62.33.91.90.80.8-2.0
Reaction time mean minus median0.20.30.8-0.5-0.3-0.40.9
Reaction time mean minus median AUC0.20.20.7-0.80.2-0.00.5
Reaction time num false alarms0.20.30.60.8-0.6-0.50.3
Reaction time num false alarms AUC0.50.81.11.1-0.8-0.90.6
Reaction time trials correct on left1.62.33.91.90.80.8-2.0
Reaction time trials on left1.62.34.02.00.90.8-2.0
Reaction time mean0.40.50.6-0.60.80.7-0.8
Reaction time mean AUC0.40.50.8-0.40.80.7-0.9
Median of all reaction times0.50.61.1-0.40.80.8-1.0
Reaction time omissions0.30.40.80.40.90.5-0.6
Reaction time false alarm rate0.91.32.40.1-1.2-1.21.5
Reaction time premature initiation rate1.52.12.71.6-1.4-1.61.0
Reaction time premature initiations1.31.96.02.4-0.8-0.9-0.2
Std. dev. reaction times0.20.20.30.4-0.5-0.60.5
Reaction time trials completed1.62.34.02.00.90.8-2.0
Reaction time trials AUC1.72.44.21.90.90.9-2.1
Social response proportion0.40.51.01.0-0.5-0.70.5
Social responses0.10.10.40.6-0.1-0.10.1
Social time0.10.10.30.5-0.3-0.10.3
Conditioned locomotion4.95.87.2-1.42.72.6-2.7
Cocaine response after cond. corrected0.10.10.10.3-0.3-0.40.4
Cocaine response after cond. not corrected0.70.70.90.6-0.9-0.91.0
Cocaine response before conditioning0.70.90.90.9-0.9-0.91.0
Saline control response3.34.45.1-1.92.22.3-2.0
Condit. Reinf. active minus inactive responses1.01.21.4-1.21.11.0-1.0
Condit. Reinf. active-inactive response ratio2.52.64.8-2.21.51.5-1.0
Condit. Reinf. active responses0.30.40.7-0.30.60.5-0.9
Condit. Reinf. inactive responses0.50.61.51.2-0.7-0.70.1
Condit. Reinf. lever presses0.50.61.70.30.70.5-1.3
Condit. Reinf. lever reinforcers received0.40.61.50.10.70.5-1.2
Pavlov. Cond. lever latency1.11.63.7-0.4-1.2-1.01.9
Pavlov. Cond. magazine entry latency1.82.05.22.3-1.2-1.20.0
Pavlov. Cond. change in total contacts0.60.82.21.5-0.1-0.2-1.0
Pavlov. Cond. index score0.60.82.01.40.0-0.2-1.1
Pavlov. Cond. latency score0.60.81.91.40.1-0.1-1.1
Pavlov. Cond. lever contacts1.42.04.50.31.41.3-2.1
Pavlov. Cond. magazine entry number1.41.75.0-2.20.81.00.2
Pavlov. Cond. intertrial magazine entries1.72.22.5-1.51.61.6-1.2
Pavlov. Cond. lever-magazine prob. diff.0.70.92.51.6-0.1-0.3-1.0
Pavlov. Cond. response bias0.60.82.00.90.50.4-1.4
Conditioned reinforcement - actives0.30.30.50.70.50.2-0.4
Conditioned reinforcement - inactives1.51.72.7-1.11.61.1-1.2
Conditioned locomotion0.20.30.6-0.40.80.2-0.4
Intermittent access intake day 1-15 change0.60.60.7-0.80.80.8-0.7
Intermittent access intake escalation0.60.60.8-0.60.90.8-0.7
Intermittent access intake escalation 21.41.42.0-1.11.41.2-0.9
Intermitt. access day 1 inactive lever presses1.51.63.1-1.71.21.0-0.9
Intermitt. access day 15 inactive lever presses1.71.83.1-0.41.81.3-1.5
Intermitt. access escalation Index1.31.21.9-0.11.41.1-1.2
Intermittent access day 1 total infusions0.30.30.5-0.40.50.7-0.7
Intermittent access day 15 total infusions0.80.91.1-0.51.11.0-1.0
Intermittent access terminal intake (last 3 days)1.21.31.9-0.81.41.2-1.1
Intermittent access total infusions0.60.60.8-0.50.90.9-0.9
Intermittent access day 1 locomotion0.60.60.9-0.50.90.6-0.9
Intermittent access day 15 total locomotion0.60.61.7-1.30.70.5-0.3
Intermittent access total locomotion0.70.81.5-1.21.00.6-0.7
Intermittent access standard deviation0.40.51.0-0.3-0.7-0.61.0
Cocaine induced anxiety3.54.04.6-2.12.11.9-1.7
Post-drug Anxiety0.20.20.3-0.50.50.4-0.5
Baseline Anxiety7.47.88.62.7-2.9-2.92.6
Lifetime Intake0.20.20.3-0.40.50.4-0.4
Incentive Sensitization - Responses0.30.30.9-0.90.30.3-0.1
Incentive Sensitization - Breakpoint0.20.20.8-0.90.20.20.0
Progressive ratio test 1 active lever presses1.41.41.7-0.91.31.3-1.3
Progressive ratio test 1 breakpoint1.81.82.2-1.11.41.5-1.4
Progressive ratio test 1 inactive lever presses3.53.74.4-1.52.12.0-2.0
Progressive ratio test 2 active lever presses0.40.50.9-1.00.70.5-0.4
Progressive ratio test 2 breakpoint0.50.60.7-0.90.80.7-0.6
Progressive ratio test 2 inactive lever presses0.40.50.7-0.60.90.6-0.6
Total sessions with >9 infusions0.20.20.30.0-0.3-0.50.5
Short access day 1 total inactive lever presses0.10.10.30.20.5-0.0-0.3
Short access day 10 total inactive lever presses3.64.06.5-2.51.91.9-1.5
Short access day 1 total infusions1.51.62.31.0-1.2-1.51.2
Short access day 10 total infusions0.40.50.6-0.80.70.7-0.5
Short access total infusions0.00.00.1-0.3-0.0-0.10.0
Short access day 1 locomotion0.50.61.20.1-0.8-0.71.1
Short access day 10 total locomotion0.50.50.8-0.9-0.4-0.60.9
Short access total locomotion0.90.91.6-0.7-0.8-0.91.3
Compulsive drug intake0.60.60.9-0.20.90.9-0.9
One hour access (0.3 mA shock)1.41.62.2-0.71.41.5-1.4
One hour access (shock baseline)0.20.20.3-0.30.50.5-0.4
Number of responses in last shaping day1.61.62.7-1.11.61.0-1.3
Context. condit. distance diff. score1.21.53.50.71.01.0-1.9
Locomotion velocity, session 13.03.35.00.4-2.0-2.02.2
Locomotion distance, session 12.53.25.22.3-1.8-1.80.9
Locomotion velocity, session 25.36.27.41.7-2.7-2.72.7
Locomotion distance, session 20.50.61.71.3-0.6-0.6-0.1
Locomotion velocity, session 31.92.22.80.9-1.7-1.71.6
Locomotion distance, session 33.43.74.31.8-2.1-2.11.7
Stereotopy head waving bouts, day 30.70.91.70.1-1.0-1.01.3
Stereotopy head waving duration, day 30.40.50.80.3-0.7-0.70.9
Locomotion velocity, session 70.70.81.61.3-0.9-0.90.5
Locomotion distance, session 72.63.36.92.6-1.7-1.70.5
Stereotopy head waving bouts, day 70.20.20.20.20.50.5-0.5
Stereotopy head waving duration, day 70.30.40.6-0.50.70.7-0.3
Locomotion velocity, session 80.60.72.21.5-0.6-0.6-0.1
Locomotion distance, session 81.42.14.51.80.60.6-2.1
Degree of sensitization distance0.90.92.0-0.10.90.9-1.4
Degree of sensitization stereotypy0.50.60.80.10.80.8-0.9
Condit. Reinf. active minus inactive responses2.42.73.2-1.11.81.8-1.8
Condit. Reinf. active-inactive response ratio1.11.21.6-0.61.21.2-1.3
Condit. Reinf. active responses4.45.36.3-1.72.52.5-2.4
Condit. Reinf. inactive responses1.11.31.5-0.91.21.2-1.2
Incentive salience index mean1.92.32.9-0.91.71.7-1.6
Condit. Reinf. lever presses0.10.10.20.50.20.2-0.4
Time in familiar zone, hab. session 10.10.10.1-0.3-0.3-0.30.2
Time in novel zone, hab. session 10.10.10.10.30.20.2-0.2
Total zone transitions, hab. session 10.30.51.21.1-0.6-0.6-0.1
Total locomotion distance, hab. session 10.60.91.81.10.50.5-1.3
Locomotion velocity, hab. session 10.71.01.91.10.60.6-1.4
Time in familiar zone, hab. session 20.40.41.21.1-0.4-0.4-0.2
Time in novel zone, hab. session 20.10.10.3-0.4-0.2-0.20.6
Total zone transitions, hab. session 20.60.82.51.6-0.3-0.3-0.7
Total locomotion distance, hab. session 21.01.32.71.00.90.9-1.6
Locomotion velocity, hab. session 21.21.73.40.71.21.2-1.9
Novel to familiar place preference ratio2.22.32.8-1.71.61.6-1.0
Novelty place preference2.12.12.9-1.71.51.5-0.9
Time in novel zone, NPP test1.71.82.2-1.51.41.4-0.9
Total zone transitions, NPP test0.81.13.51.9-0.4-0.4-0.8
Total locomotion distance, NPP test1.01.42.61.50.50.5-1.6
Locomotion velocity, NPP test0.91.32.71.20.70.7-1.7
Pavlov. Cond. lever latency1.31.64.82.2-0.8-0.8-0.7
Pavlov. Cond. magazine entry latency2.02.65.5-2.41.51.5-0.6
Pavlov. Cond. change in total contacts0.30.30.9-0.90.20.20.4
Pavlov. Cond. index score2.83.66.4-2.51.91.9-0.8
Pavlov. Cond. latency score2.32.96.4-2.51.61.6-0.3
Pavlov. Cond. lever contacts0.80.92.3-1.50.80.80.2
Pavlov. Cond. magazine entry number1.92.36.32.5-1.2-1.20.2
Pavlov. Cond. intertrial magazine entries0.50.61.30.20.70.7-1.1
Pavlov. Cond. lever-magazine prob. diff.3.03.76.5-2.52.02.0-0.9
Pavlov. Cond. response bias1.82.35.7-2.41.31.3-0.2
Bone: apparent density0.20.40.70.00.60.7-0.9
Bone surface0.20.40.6-0.70.70.8-0.4
Bone volume0.30.50.7-0.30.80.8-0.7
Bone: connectivity density0.00.00.10.30.10.1-0.3
Bone: cortical apparent density2.53.34.31.3-2.1-2.11.7
Bone: cortical area6.19.211.8-2.73.43.4-2.5
Bone: cortical porosity1.11.23.9-2.00.60.50.3
Bone: cortical porosity1.11.13.2-1.80.90.8-0.0
Bone: cortical thickness4.88.09.3-3.03.03.1-2.0
Bone: cortical thickness1.71.92.3-1.31.51.5-1.2
Bone: cortical tissue density2.93.85.01.4-2.2-2.21.8
Bone: elastic displacement1.31.41.8-1.31.21.3-0.8
Bone: elastic work6.28.111.1-3.32.93.1-1.9
Bone: endosteal estimation0.10.30.60.80.20.3-0.7
Bone: endosteal perimeter0.71.41.9-0.91.41.4-1.0
Bone: final force5.69.211.5-2.53.43.4-2.8
Bone: final moment6.410.513.0-2.73.63.6-3.0
Bone: marrow area0.10.30.60.80.20.2-0.7
Bone: maximum diameter1.52.83.9-1.31.92.0-1.3
Bone: maximum force5.810.112.1-2.73.53.5-3.0
Bone: maximum moment6.511.313.5-2.93.73.7-3.2
Bone: minimum diameter3.05.67.8-1.72.82.8-2.0
Bone: periosteal estimation2.14.35.7-1.32.42.4-2.0
Bone: periosteal perimeter3.04.96.9-2.62.42.4-1.2
Bone: post-yield work0.10.10.30.50.10.0-0.5
Bone: stiffness0.81.31.6-0.91.31.2-1.2
Bone: tissue strength1.81.72.7-0.51.41.4-1.6
Bone: trabecular number0.00.00.1-0.30.10.1-0.1
Bone: trabecular spacing1.21.63.01.50.70.7-1.7
Bone: trabecular thickness0.60.72.3-1.50.40.40.4
Bone: trabecular tissue density0.91.21.50.9-1.2-1.21.0
Breakpoint value in progressive ratio session0.10.20.3-0.30.60.4-0.4
Distance traveled before self-admin0.80.91.3-0.61.11.1-0.7
Distance traveled after self-admin0.80.91.70.40.91.0-1.3
Delta time in closed arm before/after self-admin0.20.20.4-0.60.2-0.20.3
Delta time in open arm before/after self-admin0.40.40.70.80.40.3-0.7
Diff in mean of infusions in LGA sessions0.30.30.50.7-0.4-0.50.5
Extinction: sum of active levers before priming1.01.01.50.3-1.2-1.21.1
Active lever presses in extinction session 60.20.20.5-0.0-0.2-0.70.5
Delta distance traveled before/after self-admin0.50.51.71.3-0.3-0.3-0.4
Delta ambulatory time before/after self-admin1.01.12.61.6-0.9-1.00.3
Time in closed arm before self-admin0.40.41.2-0.1-1.1-0.30.6
Time in closed arm after self-admin1.81.92.8-1.2-1.4-1.11.7
Time in open arm before self-admin0.10.10.1-0.20.3-0.30.3
Time in open arm after self-admin0.20.20.80.90.2-0.0-0.3
Sum of active levers in priming session hrs 5-60.60.60.90.90.60.5-0.9
Time to tail flick, vehicle, before self-admin0.10.10.1-0.40.30.30.1
Time to tail flick, vehicle, after self-admin2.12.22.61.1-1.6-1.61.6
Time to tail flick, test, before self-admin0.20.20.6-0.80.0-0.10.1
Time to tail flick, test, after self-admin0.30.30.60.1-0.1-0.80.7
Delta time to tail flick, vehicle, before/after SA0.30.30.80.9-0.3-0.60.0
Delta time to tail flick, test, before/after SA0.70.60.90.8-0.6-0.80.9
Ambulatory time before self-admin2.02.02.8-1.11.61.7-1.2
Ambulatory time after self-admin0.50.50.80.20.80.8-0.9
Total heroin consumption0.00.00.10.10.4-0.00.2
Area under the delay curve1.71.92.41.1-1.5-1.51.2
Delay disc. indifference point, 0s delay0.00.00.00.20.0-0.2-0.1
Delay disc. indifference point, 16s delay1.51.53.61.9-0.9-1.20.3
Delay disc. indifference point, 2s delay0.40.40.80.3-0.6-0.90.7
Delay disc. indifference point, 24s delay5.85.67.01.6-2.5-2.62.6
Delay disc. indifference point, 4s delay0.60.61.20.1-1.1-0.80.8
Delay disc. indifference point, 8s delay1.31.31.90.5-1.3-1.21.4
Delay discount exponential model param2.72.83.6-1.21.91.9-1.7
Delay discount hyperbolic model param2.52.73.4-1.11.81.8-1.6
Fecal boli incidents, locomotor time 10.40.40.70.5-0.5-0.90.6
Change in fecal boli incidents, locomotor task3.33.14.41.3-2.0-1.52.1
Time >=10cm from walls, locomotor time 10.60.61.5-0.10.51.2-0.9
Bouts of movement, locomotor time 12.02.23.41.4-1.9-1.51.1
Total resting periods, locomotor time 12.52.84.81.1-2.2-1.71.5
Rest time, locomotor task time 10.50.60.8-0.5-0.8-0.70.9
Distance moved, locomotor task time 10.91.01.5-0.41.01.1-1.2
Vertical activity count, locomotor time 12.22.33.6-0.81.71.5-1.9
Time >=10cm from walls, locomotor time 20.10.10.2-0.5-0.00.10.4
Bouts of movement, locomotor time 21.21.32.00.9-1.4-1.30.8
Total resting periods, locomotor time 20.70.81.10.9-1.1-1.00.4
Rest time, locomotor task time 20.20.30.5-0.5-0.7-0.20.6
Distance moved, locomotor task time 20.10.10.2-0.10.40.1-0.4
Vertical activity count, locomotor time 20.40.40.8-0.00.80.4-0.9
Weight adjusted by age3.13.55.0-1.12.22.0-2.0
Seeking ratio, delayed vs. immediate footshock1.51.72.40.01.51.5-1.5
Locomotion in novel chamber0.10.10.30.6-0.1-0.3-0.0
Locomotion in novel chamber post-restriction2.02.43.7-1.71.31.9-1.2
Progressive ratio0.50.60.90.8-0.4-0.90.8
Food seeking constrained by brief footshock0.20.20.3-0.6-0.6-0.50.4
Seeking ratio, punishment vs. effort0.30.40.6-0.70.20.6-0.8
Run reversals in cocaine runway, females0.90.92.51.6-0.9-0.4-0.0
Run reversals in cocaine runway, males0.70.61.1-1.10.90.8-0.1
Latency to leave start box in cocaine runway0.20.20.30.2-0.5-0.50.4
Latency to leave start box in cocaine runway, F0.20.20.80.9-0.2-0.4-0.0
Latency to leave start box in cocaine runway, M0.40.41.4-1.2-0.30.10.2
Cd content in liver1.51.62.31.0-1.5-1.50.8
Co content in liver0.00.00.10.1-0.3-0.3-0.0
Cu content in liver0.91.14.1-2.00.30.30.3
Fe content in liver0.81.01.21.1-1.1-1.10.6
K content in liver2.32.33.0-1.11.71.7-1.5
Mg content in liver0.40.40.60.30.60.6-0.8
Mn content in liver0.20.30.5-0.70.60.6-0.0
Na content in liver0.00.00.1-0.30.10.10.1
Rb content in liver0.91.21.8-0.11.21.2-1.3
Se content in liver0.30.30.50.20.70.7-0.6
Sr content in liver0.50.50.90.6-0.5-0.50.9
Zn content in liver0.40.40.9-0.9-0.2-0.20.9