Sirt7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb intron excision ratio chr10:105897165:105898265 0.32 0.17 2.4e-03 -0.01 0.08 -0.01 0.01 7.8e-01 6.8e-03 9.4e-01 1.9e-01
2 Liver gene expression ENSRNOG00000036683 0.03 0.02 1.8e-03 0.03 0.03 0.02 0.03 5.0e-04 6.0e-04 2.8e-03 8.0e-04
3 Liver mRNA stability ENSRNOG00000036683 0.17 0.1 4.7e-13 0.12 0.12 0.12 0.12 1.0e-13 6.2e-13 2.9e-13 2.3e-13

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.10.20.60.7-0.20.2
BMI without tail0.91.85.02.2-0.50.3
Body weight1.04.46.7-0.5-2.62.5
Epididymis fat weight0.10.20.30.6-0.30.3
Glucose1.92.97.0-2.6-0.90.9
Heart weight0.20.20.4-0.2-0.60.6
Left kidney weight0.20.71.0-1.0-0.70.8
Right kidney weight0.00.00.1-0.30.00.0
Tail length0.82.33.50.8-1.91.7
Length with tail1.55.47.2-1.4-2.72.7
Length without tail1.84.07.2-2.7-1.51.6
Liver weight, left0.81.22.0-1.4-0.90.9
Liver weight, right0.91.41.9-0.8-1.41.3
Parametrial fat weight0.71.32.0-0.4-1.41.3
Retroperitoneal fat weight1.23.96.1-0.4-2.32.5
Intraocular pressure0.10.10.20.5-0.20.2
Extensor digitorum longus weight0.62.34.22.10.9-1.3
Soleus weight0.30.81.4-0.0-1.21.0
Tibialis anterior weight0.20.51.01.00.4-0.7
Tibia length7.621.327.5-3.3-5.25.1
Number of licking bursts0.20.20.40.60.4-0.3
Food consumed during 24 hour testing period0.10.10.20.0-0.40.4
Times rat made contact with spout3.13.53.8-1.7-1.91.9
Mean time between licks in bursts0.91.31.90.71.4-1.3
Mean num. licks in bursts1.41.71.8-1.3-1.31.3
Std. dev. time between licks in bursts2.83.46.02.41.4-1.5
Water consumed over 24 hours0.70.81.3-1.1-0.70.7
Indifference point 0 sec0.10.10.2-0.1-0.50.4
Indifference point AUC0.10.10.10.40.2-0.2
Indifference point function ln k0.40.50.70.50.8-0.8
Indifference point function log k0.40.50.70.50.8-0.8
Delay discounting total patch changes 0 sec0.00.10.10.1-0.30.3
Delay discounting total patch changes 12 sec0.20.20.3-0.4-0.60.5
Delay discounting total patch changes 18 sec0.50.71.11.10.6-0.8
Delay discounting total patch changes 24 sec0.10.20.30.1-0.50.5
Delay discounting total patch changes 6 sec0.60.91.2-0.7-1.11.0
Delay discounting time to switch 0 sec0.10.10.2-0.10.4-0.4
Delay discounting water rate 0 sec0.30.40.50.5-0.70.7
Delay discounting water rate 12 sec0.50.81.51.20.6-0.7
Delay discounting water rate 18 sec0.50.71.61.20.4-0.5
Delay discounting water rate 24 sec0.71.02.81.70.4-0.3
Delay discounting water rate 6 sec0.30.40.70.80.5-0.6
Locomotor activity0.20.30.40.10.6-0.6
Locomotor testing distance0.81.31.70.71.3-1.3
Locomotor testing rearing0.60.91.00.81.0-1.0
Light reinforcement 10.30.61.61.30.4-0.4
Light reinforcement 20.10.20.20.4-0.40.4
Reaction time number correct6.08.612.33.52.6-2.6
Reaction time mean minus median0.50.61.1-1.1-0.60.5
Reaction time mean minus median AUC0.10.10.2-0.4-0.20.1
Reaction time num false alarms0.10.10.20.10.4-0.2
Reaction time num false alarms AUC0.40.50.80.40.9-0.7
Reaction time trials correct on left6.08.612.33.52.6-2.6
Reaction time trials on left6.38.912.73.62.6-2.7
Reaction time mean0.00.00.00.1-0.20.1
Reaction time mean AUC0.10.20.40.60.3-0.3
Median of all reaction times0.10.10.30.50.0-0.1
Reaction time omissions0.10.20.30.60.3-0.2
Reaction time false alarm rate0.60.81.8-1.4-0.50.7
Reaction time premature initiation rate0.30.40.60.20.7-0.8
Reaction time premature initiations3.04.24.42.12.0-2.1
Std. dev. reaction times0.20.20.30.20.5-0.6
Reaction time trials completed6.38.912.73.62.6-2.7
Reaction time trials AUC6.18.712.43.52.6-2.6
Social response proportion0.70.70.90.80.9-0.9
Social responses0.20.30.30.50.6-0.6
Social time0.30.30.40.60.6-0.6
Conditioned locomotion0.40.50.50.7-0.70.7
Cocaine response after cond. corrected0.30.30.4-0.6-0.50.5
Cocaine response after cond. not corrected0.00.00.1-0.40.00.0
Cocaine response before conditioning0.91.11.40.81.2-1.2
Saline control response0.91.21.9-0.3-1.41.3
Condit. Reinf. active minus inactive responses0.10.10.20.2-0.50.3
Condit. Reinf. active-inactive response ratio1.51.52.2-0.8-1.51.3
Condit. Reinf. active responses0.10.10.40.60.1-0.2
Condit. Reinf. inactive responses0.80.91.10.91.1-1.0
Condit. Reinf. lever presses0.30.40.90.90.3-0.4
Condit. Reinf. lever reinforcers received0.20.30.80.90.3-0.4
Pavlov. Cond. lever latency0.40.61.5-1.2-0.40.4
Pavlov. Cond. magazine entry latency2.93.43.61.71.9-1.9
Pavlov. Cond. change in total contacts1.01.41.91.41.1-1.1
Pavlov. Cond. index score1.01.31.81.41.0-1.0
Pavlov. Cond. latency score1.21.52.21.51.1-1.1
Pavlov. Cond. lever contacts0.60.81.91.40.4-0.5
Pavlov. Cond. magazine entry number2.53.13.2-1.7-1.81.8
Pavlov. Cond. intertrial magazine entries0.30.40.6-0.1-0.80.8
Pavlov. Cond. lever-magazine prob. diff.1.21.52.01.41.1-1.1
Pavlov. Cond. response bias0.81.12.01.40.8-0.9
Conditioned reinforcement - actives0.60.60.60.80.8-0.8
Conditioned reinforcement - inactives0.81.01.3-0.5-1.11.1
Conditioned locomotion0.00.10.10.20.2-0.3
Intermittent access intake day 1-15 change0.80.81.2-0.5-1.11.0
Intermittent access intake escalation0.40.40.6-0.2-0.80.7
Intermittent access intake escalation 23.43.44.0-1.4-2.02.0
Intermitt. access day 1 inactive lever presses1.41.52.0-0.8-1.41.4
Intermitt. access day 15 inactive lever presses0.10.10.30.5-0.10.2
Intermitt. access escalation Index0.60.61.11.10.6-0.5
Intermittent access day 1 total infusions0.00.10.10.1-0.30.3
Intermittent access day 15 total infusions0.10.10.20.2-0.40.4
Intermittent access terminal intake (last 3 days)0.50.50.7-0.2-0.80.9
Intermittent access total infusions0.10.10.10.2-0.30.3
Intermittent access day 1 locomotion0.10.10.20.40.1-0.1
Intermittent access day 15 total locomotion0.30.30.5-0.4-0.70.6
Intermittent access total locomotion0.10.10.1-0.1-0.40.4
Intermittent access standard deviation1.51.62.4-1.5-1.11.1
Cocaine induced anxiety8.710.011.9-2.5-3.43.4
Post-drug Anxiety2.32.62.9-1.4-1.71.7
Baseline Anxiety6.67.09.41.63.1-3.0
Lifetime Intake0.00.00.00.1-0.10.1
Incentive Sensitization - Responses0.10.10.1-0.0-0.40.3
Incentive Sensitization - Breakpoint0.10.10.2-0.1-0.40.3
Progressive ratio test 1 active lever presses0.10.20.20.1-0.50.5
Progressive ratio test 1 breakpoint0.30.30.40.1-0.60.6
Progressive ratio test 1 inactive lever presses0.40.50.70.2-0.80.8
Progressive ratio test 2 active lever presses0.10.10.2-0.1-0.40.4
Progressive ratio test 2 breakpoint0.00.00.00.2-0.20.2
Progressive ratio test 2 inactive lever presses0.40.40.5-0.4-0.70.7
Total sessions with >9 infusions0.30.40.50.40.7-0.7
Short access day 1 total inactive lever presses1.31.41.51.21.2-1.2
Short access day 10 total inactive lever presses2.22.43.4-0.7-1.91.8
Short access day 1 total infusions0.60.71.00.11.0-1.0
Short access day 10 total infusions0.50.60.8-0.5-0.90.8
Short access total infusions0.00.00.0-0.00.0-0.0
Short access day 1 locomotion0.10.10.4-0.6-0.00.0
Short access day 10 total locomotion0.70.71.3-1.1-0.70.7
Short access total locomotion0.20.20.4-0.7-0.10.1
Compulsive drug intake0.10.10.10.3-0.20.2
One hour access (0.3 mA shock)0.20.20.30.3-0.50.5
One hour access (shock baseline)0.10.10.20.50.3-0.3
Number of responses in last shaping day0.00.00.10.1-0.20.3
Context. condit. distance diff. score1.72.03.71.91.1-1.1
Locomotion velocity, session 10.40.51.3-1.20.0-0.0
Locomotion distance, session 12.93.84.41.62.1-2.1
Locomotion velocity, session 21.11.32.00.01.4-1.4
Locomotion distance, session 21.31.81.91.41.3-1.4
Locomotion velocity, session 30.20.20.3-0.60.4-0.4
Locomotion distance, session 30.91.01.50.31.2-1.2
Stereotopy head waving bouts, day 30.10.10.3-0.60.0-0.0
Stereotopy head waving duration, day 30.00.00.0-0.20.2-0.2
Locomotion velocity, session 70.40.50.60.40.8-0.8
Locomotion distance, session 74.25.46.12.02.4-2.5
Stereotopy head waving bouts, day 70.00.00.00.0-0.20.2
Stereotopy head waving duration, day 70.20.30.3-0.4-0.60.6
Locomotion velocity, session 82.22.72.91.71.6-1.6
Locomotion distance, session 84.26.29.43.12.1-2.2
Degree of sensitization distance0.40.41.01.00.4-0.4
Degree of sensitization stereotypy0.10.10.10.1-0.30.3
Condit. Reinf. active minus inactive responses0.40.50.80.0-0.80.9
Condit. Reinf. active-inactive response ratio0.20.30.4-0.0-0.60.7
Condit. Reinf. active responses0.70.81.20.1-1.11.1
Condit. Reinf. inactive responses0.20.20.30.1-0.50.5
Incentive salience index mean0.20.30.40.2-0.60.7
Condit. Reinf. lever presses0.30.50.60.80.6-0.6
Time in familiar zone, hab. session 10.10.10.2-0.5-0.30.3
Time in novel zone, hab. session 10.10.10.20.40.2-0.3
Total zone transitions, hab. session 10.50.70.80.80.8-0.9
Total locomotion distance, hab. session 10.30.40.91.00.4-0.5
Locomotion velocity, hab. session 10.30.40.91.00.4-0.4
Time in familiar zone, hab. session 20.30.30.30.60.6-0.5
Time in novel zone, hab. session 20.00.00.1-0.00.2-0.2
Total zone transitions, hab. session 22.83.64.62.11.7-1.8
Total locomotion distance, hab. session 21.92.54.42.11.2-1.3
Locomotion velocity, hab. session 21.41.93.82.00.9-1.0
Novel to familiar place preference ratio3.84.04.8-1.6-2.12.2
Novelty place preference3.94.04.8-1.7-2.12.2
Time in novel zone, NPP test2.82.93.5-1.4-1.81.9
Total zone transitions, NPP test4.05.76.82.62.2-2.3
Total locomotion distance, NPP test3.44.77.02.61.9-1.9
Locomotion velocity, NPP test2.02.84.62.21.4-1.4
Pavlov. Cond. lever latency3.34.24.72.22.0-2.0
Pavlov. Cond. magazine entry latency4.45.66.3-2.1-2.52.5
Pavlov. Cond. change in total contacts2.82.93.4-1.8-1.71.6
Pavlov. Cond. index score3.94.95.7-1.9-2.42.4
Pavlov. Cond. latency score4.05.25.6-2.1-2.42.3
Pavlov. Cond. lever contacts1.51.81.8-1.3-1.41.3
Pavlov. Cond. magazine entry number5.77.27.62.62.8-2.7
Pavlov. Cond. intertrial magazine entries0.50.71.31.20.6-0.6
Pavlov. Cond. lever-magazine prob. diff.4.15.26.0-1.9-2.52.4
Pavlov. Cond. response bias4.75.76.2-2.3-2.52.4
Bone: apparent density0.10.10.30.50.1-0.0
Bone surface0.10.20.3-0.3-0.60.5
Bone volume0.00.10.10.1-0.40.3
Bone: connectivity density0.60.91.11.10.9-0.9
Bone: cortical apparent density0.40.60.9-0.00.9-1.0
Bone: cortical area3.75.77.7-1.3-2.72.8
Bone: cortical porosity6.06.47.3-2.7-2.42.5
Bone: cortical porosity4.85.25.3-2.3-2.22.3
Bone: cortical thickness5.08.210.2-2.1-3.23.2
Bone: cortical thickness1.51.82.4-0.9-1.51.6
Bone: cortical tissue density0.50.71.1-0.01.0-1.0
Bone: elastic displacement1.71.92.3-1.0-1.51.5
Bone: elastic work9.712.615.0-2.8-3.93.9
Bone: endosteal estimation0.51.11.71.30.9-0.9
Bone: endosteal perimeter0.30.70.9-0.4-1.00.9
Bone: final force2.74.46.2-1.0-2.52.5
Bone: final moment3.76.18.3-1.3-2.92.9
Bone: marrow area0.51.11.71.30.9-0.9
Bone: maximum diameter0.71.31.8-0.6-1.31.3
Bone: maximum force2.13.75.3-0.7-2.32.3
Bone: maximum moment3.05.17.2-1.0-2.72.7
Bone: minimum diameter2.13.95.3-1.1-2.32.3
Bone: periosteal estimation0.61.11.7-0.2-1.31.3
Bone: periosteal perimeter3.86.27.4-2.0-2.72.7
Bone: post-yield work0.60.81.11.00.8-0.9
Bone: stiffness0.10.20.20.1-0.50.5
Bone: tissue strength0.20.20.40.6-0.20.2
Bone: trabecular number0.00.00.00.10.2-0.1
Bone: trabecular spacing2.43.05.22.31.4-1.4
Bone: trabecular thickness3.03.74.2-2.0-1.81.9
Bone: trabecular tissue density0.30.40.70.20.8-0.8
Breakpoint value in progressive ratio session1.71.92.1-1.3-1.41.5
Distance traveled before self-admin2.93.13.7-1.5-1.91.9
Distance traveled after self-admin0.10.10.30.6-0.10.2
Delta time in closed arm before/after self-admin0.40.40.60.50.7-0.7
Delta time in open arm before/after self-admin0.10.10.20.40.2-0.2
Diff in mean of infusions in LGA sessions0.00.00.1-0.40.1-0.1
Extinction: sum of active levers before priming0.10.10.3-0.60.3-0.3
Active lever presses in extinction session 61.01.01.6-1.3-0.80.8
Delta distance traveled before/after self-admin2.12.32.51.61.5-1.5
Delta ambulatory time before/after self-admin2.93.23.51.61.9-1.8
Time in closed arm before self-admin0.70.81.0-1.0-0.80.8
Time in closed arm after self-admin1.11.22.2-1.5-0.80.8
Time in open arm before self-admin0.70.80.90.61.0-1.0
Time in open arm after self-admin0.80.90.90.91.0-0.9
Sum of active levers in priming session hrs 5-61.91.82.3-1.0-1.51.5
Time to tail flick, vehicle, before self-admin0.00.00.10.30.1-0.1
Time to tail flick, vehicle, after self-admin1.31.42.10.51.4-1.4
Time to tail flick, test, before self-admin0.30.30.3-0.4-0.60.5
Time to tail flick, test, after self-admin0.10.10.2-0.10.3-0.4
Delta time to tail flick, vehicle, before/after SA1.11.01.20.91.1-1.1
Delta time to tail flick, test, before/after SA0.10.10.2-0.50.1-0.1
Ambulatory time before self-admin3.53.64.4-1.4-2.12.1
Ambulatory time after self-admin0.00.10.10.2-0.20.2
Total heroin consumption1.31.52.0-1.4-1.11.1
Area under the delay curve0.80.81.20.31.1-1.1
Delay disc. indifference point, 0s delay0.10.10.10.10.3-0.3
Delay disc. indifference point, 16s delay3.83.84.41.62.1-2.1
Delay disc. indifference point, 2s delay0.10.10.1-0.20.3-0.3
Delay disc. indifference point, 24s delay0.80.81.2-0.31.1-1.0
Delay disc. indifference point, 4s delay0.10.10.1-0.10.3-0.3
Delay disc. indifference point, 8s delay0.10.10.3-0.50.2-0.2
Delay discount exponential model param0.70.71.1-0.1-1.01.0
Delay discount hyperbolic model param0.70.71.1-0.1-1.01.0
Fecal boli incidents, locomotor time 10.60.70.90.60.9-0.9
Change in fecal boli incidents, locomotor task0.70.71.7-1.3-0.50.5
Time >=10cm from walls, locomotor time 10.80.81.61.30.7-0.6
Bouts of movement, locomotor time 10.40.40.70.10.8-0.8
Total resting periods, locomotor time 10.20.30.4-0.20.6-0.6
Rest time, locomotor task time 10.30.30.6-0.8-0.40.4
Distance moved, locomotor task time 10.10.10.20.4-0.00.1
Vertical activity count, locomotor time 10.40.41.01.00.4-0.4
Time >=10cm from walls, locomotor time 20.10.10.10.20.3-0.3
Bouts of movement, locomotor time 21.01.11.50.71.2-1.2
Total resting periods, locomotor time 21.41.51.91.01.3-1.4
Rest time, locomotor task time 20.00.00.0-0.10.2-0.2
Distance moved, locomotor task time 20.00.00.00.20.1-0.1
Vertical activity count, locomotor time 20.91.01.21.10.9-0.9
Weight adjusted by age1.71.92.6-0.7-1.61.6
Seeking ratio, delayed vs. immediate footshock0.30.40.5-0.0-0.70.7
Locomotion in novel chamber0.70.81.00.71.0-1.0
Locomotion in novel chamber post-restriction1.11.32.0-0.4-1.41.4
Progressive ratio0.10.10.20.00.5-0.5
Food seeking constrained by brief footshock0.30.30.6-0.8-0.40.5
Seeking ratio, punishment vs. effort0.00.00.10.1-0.20.2
Run reversals in cocaine runway, females1.71.71.71.31.3-1.3
Run reversals in cocaine runway, males3.23.13.4-1.6-1.81.8
Latency to leave start box in cocaine runway0.40.50.50.70.7-0.7
Latency to leave start box in cocaine runway, F1.82.02.01.41.4-1.4
Latency to leave start box in cocaine runway, M0.30.30.3-0.4-0.60.5
Cd content in liver1.21.31.70.81.3-1.3
Co content in liver0.10.10.10.20.2-0.2
Cu content in liver2.02.43.0-1.7-1.41.5
Fe content in liver0.60.81.00.61.0-1.0
K content in liver0.20.20.50.7-0.10.3
Mg content in liver2.12.13.21.81.4-1.2
Mn content in liver0.10.20.2-0.3-0.40.5
Na content in liver0.00.00.0-0.2-0.00.1
Rb content in liver0.30.41.01.00.4-0.2
Se content in liver0.00.00.00.2-0.10.2
Sr content in liver2.22.03.2-1.8-1.21.2
Zn content in liver0.00.10.1-0.40.10.1