Ogfod3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000036668 0.08 0.04 1.9e-09 0.07 0.07 0.08 0.07 8.5e-08 1.0e-08 6.7e-09 1.2e-08
2 Brain mRNA stability ENSRNOG00000036668 0.09 0.07 2.3e-05 0.06 0.05 0.05 0.05 3.4e-06 2.3e-05 4.2e-05 3.1e-05
3 Liver gene expression ENSRNOG00000036668 0.06 0.03 7.9e-08 0.07 0.06 0.05 0.05 5.2e-08 4.4e-07 2.0e-06 2.2e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.10.40.90.2-0.60.9
BMI without tail3.06.217.84.2-0.70.5
Body weight1.35.66.52.6-2.42.2
Epididymis fat weight0.20.51.41.2-0.10.0
Glucose3.04.510.3-3.2-1.21.4
Heart weight0.91.32.00.1-1.31.4
Left kidney weight0.20.60.8-0.7-0.90.7
Right kidney weight0.10.20.7-0.8-0.10.2
Tail length3.410.328.15.3-1.50.7
Length with tail0.83.04.52.1-1.71.2
Length without tail1.43.17.9-2.8-1.00.7
Liver weight, left0.81.21.5-1.0-1.11.2
Liver weight, right0.81.42.11.0-1.11.4
Parametrial fat weight1.22.44.12.0-1.11.3
Retroperitoneal fat weight2.47.815.94.0-2.11.7
Intraocular pressure0.70.92.71.6-0.3-0.2
Extensor digitorum longus weight0.31.01.21.01.1-0.9
Soleus weight0.82.34.82.2-1.01.1
Tibialis anterior weight0.10.41.01.00.5-0.1
Tibia length6.317.727.42.2-4.65.2
Number of licking bursts0.20.20.30.60.4-0.4
Food consumed during 24 hour testing period0.40.51.31.1-0.30.4
Times rat made contact with spout3.33.75.21.6-1.82.3
Mean time between licks in bursts1.31.92.2-1.31.3-1.5
Mean num. licks in bursts1.21.42.40.5-1.31.6
Std. dev. time between licks in bursts2.02.33.31.31.4-1.8
Water consumed over 24 hours0.30.40.9-0.1-0.50.9
Indifference point 0 sec0.10.10.30.5-0.1-0.3
Indifference point AUC0.10.10.40.60.00.0
Indifference point function ln k1.42.02.5-1.61.3-1.3
Indifference point function log k1.42.02.5-1.61.3-1.3
Delay discounting total patch changes 0 sec0.10.20.30.50.1-0.5
Delay discounting total patch changes 12 sec0.20.20.40.6-0.6-0.1
Delay discounting total patch changes 18 sec0.50.61.00.40.9-1.0
Delay discounting total patch changes 24 sec0.20.30.70.8-0.40.1
Delay discounting total patch changes 6 sec0.30.50.70.8-0.70.5
Delay discounting time to switch 0 sec0.20.30.4-0.70.3-0.7
Delay discounting water rate 0 sec0.71.13.11.8-0.4-0.1
Delay discounting water rate 12 sec0.20.30.60.00.5-0.8
Delay discounting water rate 18 sec0.30.50.70.60.6-0.8
Delay discounting water rate 24 sec0.40.61.71.30.2-0.3
Delay discounting water rate 6 sec0.20.30.4-0.40.6-0.6
Locomotor activity0.60.91.8-1.30.6-0.8
Locomotor testing distance1.32.12.3-1.51.5-1.4
Locomotor testing rearing0.40.71.3-0.30.8-1.1
Light reinforcement 10.50.92.61.60.20.2
Light reinforcement 20.50.71.61.3-0.40.6
Reaction time number correct2.84.06.61.12.6-2.1
Reaction time mean minus median0.10.20.3-0.4-0.60.1
Reaction time mean minus median AUC0.00.00.1-0.2-0.10.1
Reaction time num false alarms0.00.00.1-0.1-0.00.4
Reaction time num false alarms AUC0.10.10.2-0.40.5-0.2
Reaction time trials correct on left2.84.06.61.12.6-2.1
Reaction time trials on left2.94.16.71.12.6-2.1
Reaction time mean0.30.40.70.8-0.60.5
Reaction time mean AUC0.20.20.70.8-0.1-0.1
Median of all reaction times0.20.30.70.8-0.40.4
Reaction time omissions0.20.30.50.70.2-0.6
Reaction time false alarm rate0.60.81.0-0.8-0.91.0
Reaction time premature initiation rate0.50.61.0-0.71.0-0.6
Reaction time premature initiations1.92.85.0-0.12.2-1.8
Std. dev. reaction times0.00.10.1-0.30.2-0.3
Reaction time trials completed2.94.16.71.12.6-2.1
Reaction time trials AUC2.73.96.31.12.5-2.0
Social response proportion1.01.12.1-0.70.8-1.4
Social responses0.81.01.8-0.70.8-1.3
Social time0.30.40.7-0.90.5-0.4
Conditioned locomotion2.22.67.02.7-0.50.7
Cocaine response after cond. corrected0.20.20.4-0.7-0.4-0.1
Cocaine response after cond. not corrected0.50.61.1-1.00.2-0.8
Cocaine response before conditioning1.31.62.3-0.81.5-1.4
Saline control response1.51.93.92.0-1.00.9
Condit. Reinf. active minus inactive responses0.40.50.60.8-0.80.6
Condit. Reinf. active-inactive response ratio2.02.12.81.1-1.71.5
Condit. Reinf. active responses0.10.10.40.6-0.20.1
Condit. Reinf. inactive responses0.50.60.9-0.50.9-0.7
Condit. Reinf. lever presses0.20.30.50.70.4-0.3
Condit. Reinf. lever reinforcers received0.10.10.40.70.0-0.0
Pavlov. Cond. lever latency0.30.51.3-1.1-0.30.0
Pavlov. Cond. magazine entry latency1.92.23.8-0.82.0-1.5
Pavlov. Cond. change in total contacts0.40.50.90.00.9-0.8
Pavlov. Cond. index score0.40.61.10.11.1-0.8
Pavlov. Cond. latency score0.50.61.30.21.1-0.8
Pavlov. Cond. lever contacts0.60.82.21.50.40.0
Pavlov. Cond. magazine entry number1.92.33.50.7-1.91.7
Pavlov. Cond. intertrial magazine entries1.11.42.71.6-1.00.8
Pavlov. Cond. lever-magazine prob. diff.0.50.71.30.01.1-0.9
Pavlov. Cond. response bias0.30.40.70.50.8-0.6
Conditioned reinforcement - actives0.60.61.10.31.1-0.8
Conditioned reinforcement - inactives0.50.60.80.9-0.90.4
Conditioned locomotion0.10.10.10.30.3-0.3
Intermittent access intake day 1-15 change0.80.82.11.4-0.6-0.2
Intermittent access intake escalation0.90.92.51.6-0.2-0.3
Intermittent access intake escalation 22.32.23.11.1-1.81.5
Intermitt. access day 1 inactive lever presses0.30.30.50.6-0.70.3
Intermitt. access day 15 inactive lever presses0.50.51.41.2-0.4-0.0
Intermitt. access escalation Index1.10.92.31.50.6-0.3
Intermittent access day 1 total infusions0.20.20.70.8-0.2-0.0
Intermittent access day 15 total infusions0.80.82.41.6-0.1-0.3
Intermittent access terminal intake (last 3 days)1.01.12.81.7-0.70.3
Intermittent access total infusions0.50.61.51.20.1-0.5
Intermittent access day 1 locomotion0.60.61.10.40.7-1.0
Intermittent access day 15 total locomotion0.40.40.91.0-0.5-0.3
Intermittent access total locomotion0.30.40.50.70.2-0.7
Intermittent access standard deviation0.80.91.7-1.3-0.9-0.0
Cocaine induced anxiety5.46.212.30.4-3.52.5
Post-drug Anxiety1.21.33.2-0.4-1.80.8
Baseline Anxiety5.65.98.4-1.92.9-2.4
Lifetime Intake0.20.30.60.80.2-0.3
Incentive Sensitization - Responses0.70.71.20.90.01.1
Incentive Sensitization - Breakpoint0.60.61.10.8-0.01.0
Progressive ratio test 1 active lever presses0.80.82.11.4-0.2-0.5
Progressive ratio test 1 breakpoint0.90.92.61.6-0.3-0.2
Progressive ratio test 1 inactive lever presses0.91.02.61.6-0.60.2
Progressive ratio test 2 active lever presses0.40.41.01.0-0.10.4
Progressive ratio test 2 breakpoint0.40.51.41.20.10.1
Progressive ratio test 2 inactive lever presses0.20.20.40.5-0.60.3
Total sessions with >9 infusions0.40.40.8-0.10.9-0.7
Short access day 1 total inactive lever presses0.70.81.40.11.0-1.2
Short access day 10 total inactive lever presses1.61.72.71.3-1.60.9
Short access day 1 total infusions0.80.81.7-1.30.8-0.3
Short access day 10 total infusions0.50.51.31.1-0.60.2
Short access total infusions0.10.10.10.40.10.3
Short access day 1 locomotion0.40.40.8-0.9-0.40.5
Short access day 10 total locomotion0.30.40.5-0.7-0.5-0.5
Short access total locomotion0.20.20.6-0.8-0.0-0.2
Compulsive drug intake0.20.20.30.2-0.50.4
One hour access (0.3 mA shock)0.91.02.71.6-0.50.3
One hour access (shock baseline)0.50.61.21.10.6-0.2
Number of responses in last shaping day0.40.40.90.5-0.31.0
Context. condit. distance diff. score1.11.32.61.60.7-0.9
Locomotion velocity, session 10.91.02.7-1.7-0.40.3
Locomotion distance, session 12.53.34.8-1.42.2-1.7
Locomotion velocity, session 23.03.66.0-2.51.5-1.5
Locomotion distance, session 20.81.21.9-0.31.4-1.3
Locomotion velocity, session 31.11.23.2-1.80.5-0.4
Locomotion distance, session 32.62.94.3-2.11.4-1.6
Stereotopy head waving bouts, day 30.40.41.1-1.1-0.20.3
Stereotopy head waving duration, day 30.20.20.6-0.80.00.1
Locomotion velocity, session 71.11.21.5-0.81.2-1.2
Locomotion distance, session 73.44.36.0-1.12.5-2.4
Stereotopy head waving bouts, day 70.10.10.20.1-0.40.2
Stereotopy head waving duration, day 70.20.20.50.3-0.70.3
Locomotion velocity, session 81.01.21.8-0.41.3-1.3
Locomotion distance, session 81.92.93.51.31.8-1.9
Degree of sensitization distance0.60.61.81.40.10.1
Degree of sensitization stereotypy0.20.20.30.5-0.50.2
Condit. Reinf. active minus inactive responses1.41.62.71.7-0.81.2
Condit. Reinf. active-inactive response ratio0.40.40.60.7-0.40.8
Condit. Reinf. active responses2.73.36.92.6-1.11.3
Condit. Reinf. inactive responses1.21.43.51.9-0.70.5
Incentive salience index mean1.01.23.01.7-0.40.7
Condit. Reinf. lever presses0.50.71.00.61.0-0.8
Time in familiar zone, hab. session 10.30.30.6-0.3-0.80.4
Time in novel zone, hab. session 10.10.10.20.20.4-0.4
Total zone transitions, hab. session 10.20.30.4-0.60.6-0.3
Total locomotion distance, hab. session 10.00.10.10.30.3-0.0
Locomotion velocity, hab. session 10.10.10.20.40.4-0.0
Time in familiar zone, hab. session 20.20.20.70.10.2-0.8
Time in novel zone, hab. session 20.10.10.3-0.60.30.0
Total zone transitions, hab. session 21.01.32.70.31.6-1.1
Total locomotion distance, hab. session 20.91.21.51.21.1-1.0
Locomotion velocity, hab. session 20.81.11.91.40.9-0.8
Novel to familiar place preference ratio2.82.94.40.8-2.11.9
Novelty place preference2.82.94.50.7-2.11.9
Time in novel zone, NPP test2.22.33.50.6-1.91.7
Total zone transitions, NPP test2.33.35.70.32.4-2.1
Total locomotion distance, NPP test1.92.63.71.01.9-1.7
Locomotion velocity, NPP test1.21.72.21.11.5-1.3
Pavlov. Cond. lever latency1.51.93.4-0.41.5-1.8
Pavlov. Cond. magazine entry latency2.63.44.51.1-2.12.1
Pavlov. Cond. change in total contacts1.01.11.8-0.2-1.21.4
Pavlov. Cond. index score2.83.64.61.5-2.02.1
Pavlov. Cond. latency score2.63.34.71.2-2.02.2
Pavlov. Cond. lever contacts0.70.81.20.6-0.91.1
Pavlov. Cond. magazine entry number3.54.46.4-0.82.5-2.5
Pavlov. Cond. intertrial magazine entries0.40.51.11.00.4-0.4
Pavlov. Cond. lever-magazine prob. diff.2.83.54.61.4-2.02.1
Pavlov. Cond. response bias2.32.94.20.8-2.02.0
Bone: apparent density0.10.10.20.50.30.1
Bone surface0.20.40.90.9-0.20.6
Bone volume0.20.30.70.9-0.10.5
Bone: connectivity density0.30.50.90.51.0-0.6
Bone: cortical apparent density1.21.63.2-1.80.8-1.0
Bone: cortical area2.74.15.71.0-2.32.4
Bone: cortical porosity2.93.24.7-0.6-2.22.1
Bone: cortical porosity2.72.94.4-0.1-2.02.1
Bone: cortical thickness3.55.88.80.2-3.02.9
Bone: cortical thickness1.21.42.1-0.3-1.41.4
Bone: cortical tissue density1.31.73.4-1.80.8-1.0
Bone: elastic displacement1.61.83.20.6-1.41.8
Bone: elastic work7.69.916.11.1-3.54.0
Bone: endosteal estimation0.40.81.00.81.0-0.9
Bone: endosteal perimeter0.40.81.51.2-0.60.8
Bone: final force2.43.95.81.0-2.22.4
Bone: final moment3.15.17.51.2-2.52.7
Bone: marrow area0.40.81.00.81.0-0.9
Bone: maximum diameter0.40.70.80.7-0.80.9
Bone: maximum force2.23.95.21.3-2.22.3
Bone: maximum moment2.95.16.71.5-2.52.6
Bone: minimum diameter1.42.62.91.6-1.71.5
Bone: periosteal estimation0.61.11.41.2-1.01.0
Bone: periosteal perimeter2.44.05.70.8-2.42.4
Bone: post-yield work0.30.40.80.00.6-0.9
Bone: stiffness0.10.20.3-0.3-0.50.4
Bone: tissue strength0.30.30.70.8-0.10.2
Bone: trabecular number0.00.10.10.30.20.2
Bone: trabecular spacing1.41.82.50.91.5-1.6
Bone: trabecular thickness1.82.23.7-0.2-1.71.9
Bone: trabecular tissue density0.60.91.5-1.20.8-0.8
Breakpoint value in progressive ratio session0.60.61.4-0.5-1.20.4
Distance traveled before self-admin2.42.54.40.3-1.72.1
Distance traveled after self-admin0.70.82.41.6-0.0-0.2
Delta time in closed arm before/after self-admin0.80.81.60.01.3-0.9
Delta time in open arm before/after self-admin0.10.10.20.0-0.4-0.2
Diff in mean of infusions in LGA sessions0.50.51.3-1.10.1-0.5
Extinction: sum of active levers before priming1.71.84.3-2.1-0.50.8
Active lever presses in extinction session 61.21.23.1-1.8-0.70.0
Delta distance traveled before/after self-admin2.12.24.20.51.5-2.1
Delta ambulatory time before/after self-admin3.33.67.00.21.9-2.6
Time in closed arm before self-admin0.40.40.6-0.7-0.80.4
Time in closed arm after self-admin0.40.51.3-1.2-0.1-0.2
Time in open arm before self-admin0.20.30.5-0.10.7-0.5
Time in open arm after self-admin0.00.00.0-0.10.1-0.2
Sum of active levers in priming session hrs 5-60.90.91.80.3-1.40.9
Time to tail flick, vehicle, before self-admin0.40.40.50.7-0.60.6
Time to tail flick, vehicle, after self-admin1.92.03.4-1.81.3-1.0
Time to tail flick, test, before self-admin0.50.51.30.5-0.1-1.1
Time to tail flick, test, after self-admin0.90.91.9-0.70.5-1.4
Delta time to tail flick, vehicle, before/after SA1.41.32.2-0.61.5-1.2
Delta time to tail flick, test, before/after SA0.80.72.1-1.5-0.10.2
Ambulatory time before self-admin3.23.35.30.7-2.02.3
Ambulatory time after self-admin0.40.41.01.0-0.3-0.0
Total heroin consumption1.51.92.5-1.6-1.50.9
Area under the delay curve1.81.92.7-1.41.1-1.6
Delay disc. indifference point, 0s delay0.20.20.6-0.8-0.0-0.2
Delay disc. indifference point, 16s delay3.63.66.2-0.82.0-2.5
Delay disc. indifference point, 2s delay0.40.40.8-0.90.3-0.6
Delay disc. indifference point, 24s delay2.62.55.4-2.30.9-1.2
Delay disc. indifference point, 4s delay0.80.81.4-1.20.2-1.0
Delay disc. indifference point, 8s delay0.80.81.6-1.30.2-0.9
Delay discount exponential model param2.02.12.91.7-1.01.6
Delay discount hyperbolic model param2.02.12.91.7-1.01.6
Fecal boli incidents, locomotor time 10.20.20.4-0.20.6-0.5
Change in fecal boli incidents, locomotor task1.00.92.2-1.5-0.5-0.6
Time >=10cm from walls, locomotor time 11.31.33.31.80.1-0.7
Bouts of movement, locomotor time 11.01.13.0-1.70.5-0.1
Total resting periods, locomotor time 11.11.23.3-1.80.5-0.0
Rest time, locomotor task time 10.30.30.6-0.6-0.20.8
Distance moved, locomotor task time 10.70.82.10.50.2-1.4
Vertical activity count, locomotor time 10.50.61.20.7-0.0-1.1
Time >=10cm from walls, locomotor time 20.30.30.60.5-0.70.2
Bouts of movement, locomotor time 21.61.72.0-1.31.4-1.2
Total resting periods, locomotor time 21.61.72.7-0.91.6-1.3
Rest time, locomotor task time 20.30.31.0-0.01.0-0.1
Distance moved, locomotor task time 20.40.40.9-0.4-0.5-0.9
Vertical activity count, locomotor time 20.20.20.7-0.1-0.2-0.8
Weight adjusted by age3.43.85.31.0-2.32.2
Seeking ratio, delayed vs. immediate footshock1.01.11.31.2-1.01.0
Locomotion in novel chamber0.50.71.0-0.30.9-1.0
Locomotion in novel chamber post-restriction2.02.35.22.3-1.20.6
Progressive ratio0.20.20.4-0.70.1-0.3
Food seeking constrained by brief footshock0.20.20.3-0.3-0.50.5
Seeking ratio, punishment vs. effort0.10.20.40.60.10.3
Run reversals in cocaine runway, females0.60.61.2-0.11.1-0.8
Run reversals in cocaine runway, males2.02.03.20.6-1.81.5
Latency to leave start box in cocaine runway0.50.51.5-0.11.2-0.3
Latency to leave start box in cocaine runway, F0.80.92.2-0.01.5-0.6
Latency to leave start box in cocaine runway, M0.00.00.10.30.20.1
Cd content in liver1.31.41.8-1.30.9-1.3
Co content in liver0.20.30.4-0.10.6-0.6
Cu content in liver0.70.91.4-0.1-1.11.2
Fe content in liver0.60.81.3-0.60.8-1.1
K content in liver1.41.43.82.00.4-0.3
Mg content in liver2.02.12.41.41.5-1.4
Mn content in liver0.00.10.10.2-0.30.2
Na content in liver0.10.10.2-0.20.5-0.0
Rb content in liver0.50.61.71.3-0.20.2
Se content in liver0.40.41.31.1-0.0-0.1
Sr content in liver1.41.32.2-0.6-1.51.1
Zn content in liver0.10.10.20.10.2-0.5