Rab40b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000036661 0.09 0.06 9.2e-03 0 0.02 0.04 0.01 1.5e-01 8.1e-03 1.0e-04 6.5e-02
2 Brain mRNA stability ENSRNOG00000036661 0.1 0.05 2.0e-06 0.04 0.07 0.07 0.07 1.3e-04 6.0e-07 4.8e-07 3.2e-07
3 Liver gene expression ENSRNOG00000036661 0.18 0.07 8.1e-14 0.11 0.12 0.12 0.12 3.2e-12 6.3e-13 4.9e-13 1.9e-13

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.72.23.20.71.71.8
BMI without tail1.94.06.90.9-2.0-2.6
Body weight1.25.19.43.12.01.4
Epididymis fat weight0.10.20.4-0.1-0.4-0.6
Glucose5.27.912.2-1.23.23.5
Heart weight1.72.53.11.21.81.7
Left kidney weight1.75.05.91.92.32.4
Right kidney weight1.33.85.21.32.12.3
Tail length2.47.312.51.9-2.5-3.5
Length with tail0.51.95.12.30.80.2
Length without tail5.011.017.70.83.84.2
Liver weight, left1.11.82.5-0.71.61.6
Liver weight, right0.30.51.01.00.60.3
Parametrial fat weight0.00.10.2-0.0-0.2-0.4
Retroperitoneal fat weight0.61.92.81.4-0.9-1.7
Intraocular pressure0.81.11.80.7-1.1-1.3
Extensor digitorum longus weight0.41.72.70.4-1.6-1.5
Soleus weight0.51.43.21.8-0.6-0.9
Tibialis anterior weight0.51.62.4-0.1-1.5-1.5
Tibia length7.220.430.55.54.43.4
Number of licking bursts0.40.40.9-0.2-0.7-0.9
Food consumed during 24 hour testing period0.60.71.30.3-0.9-1.2
Times rat made contact with spout0.30.41.0-0.3-0.3-1.0
Mean time between licks in bursts0.30.41.2-1.1-0.30.2
Mean num. licks in bursts0.00.00.10.30.20.1
Std. dev. time between licks in bursts1.51.82.80.6-1.7-1.6
Water consumed over 24 hours0.00.00.1-0.30.20.1
Indifference point 0 sec0.10.20.50.7-0.2-0.4
Indifference point AUC0.10.10.2-0.4-0.3-0.4
Indifference point function ln k0.10.10.4-0.00.10.6
Indifference point function log k0.10.10.4-0.00.10.6
Delay discounting total patch changes 0 sec0.10.20.50.7-0.3-0.3
Delay discounting total patch changes 12 sec0.00.10.2-0.40.1-0.1
Delay discounting total patch changes 18 sec0.40.60.80.5-0.9-0.8
Delay discounting total patch changes 24 sec0.30.41.21.10.0-0.4
Delay discounting total patch changes 6 sec0.00.00.1-0.20.1-0.1
Delay discounting time to switch 0 sec0.00.10.1-0.1-0.3-0.2
Delay discounting water rate 0 sec0.10.20.30.5-0.3-0.5
Delay discounting water rate 12 sec0.20.40.50.60.50.7
Delay discounting water rate 18 sec0.30.51.21.1-0.4-0.2
Delay discounting water rate 24 sec1.01.43.92.0-0.3-0.4
Delay discounting water rate 6 sec0.60.81.60.40.81.3
Locomotor activity0.50.82.3-1.50.10.3
Locomotor testing distance0.20.30.5-0.7-0.6-0.3
Locomotor testing rearing0.91.51.7-1.3-1.2-1.2
Light reinforcement 10.91.72.61.0-1.2-1.6
Light reinforcement 20.20.30.60.8-0.2-0.6
Reaction time number correct2.23.25.40.4-2.3-2.0
Reaction time mean minus median0.40.61.7-1.30.20.2
Reaction time mean minus median AUC0.10.10.2-0.40.1-0.0
Reaction time num false alarms0.00.10.10.3-0.2-0.2
Reaction time num false alarms AUC0.10.10.2-0.0-0.4-0.3
Reaction time trials correct on left2.23.25.40.4-2.3-2.0
Reaction time trials on left2.43.45.60.4-2.4-2.1
Reaction time mean0.00.00.10.1-0.2-0.3
Reaction time mean AUC0.20.20.40.2-0.6-0.6
Median of all reaction times0.10.10.10.4-0.2-0.2
Reaction time omissions0.71.01.4-0.6-1.1-1.2
Reaction time false alarm rate0.30.40.6-0.20.80.7
Reaction time premature initiation rate0.40.51.4-1.2-0.4-0.1
Reaction time premature initiations1.11.62.7-0.8-1.6-1.2
Std. dev. reaction times0.30.40.7-0.9-0.5-0.3
Reaction time trials completed2.43.45.60.4-2.4-2.1
Reaction time trials AUC2.33.25.30.6-2.3-2.0
Social response proportion0.30.30.70.80.20.4
Social responses0.20.30.60.80.30.4
Social time0.50.61.11.00.60.7
Conditioned locomotion2.12.54.12.0-1.0-1.5
Cocaine response after cond. corrected0.30.40.70.00.90.6
Cocaine response after cond. not corrected0.20.30.3-0.50.50.5
Cocaine response before conditioning0.91.12.1-1.4-1.1-0.4
Saline control response0.70.91.71.3-0.4-0.9
Condit. Reinf. active minus inactive responses2.12.67.42.70.60.4
Condit. Reinf. active-inactive response ratio2.62.86.32.51.20.7
Condit. Reinf. active responses1.11.54.52.10.1-0.0
Condit. Reinf. inactive responses0.10.10.10.4-0.4-0.1
Condit. Reinf. lever presses0.20.30.50.2-0.6-0.7
Condit. Reinf. lever reinforcers received0.91.33.71.9-0.1-0.3
Pavlov. Cond. lever latency0.81.11.7-0.51.21.3
Pavlov. Cond. magazine entry latency2.83.25.4-2.3-1.7-1.2
Pavlov. Cond. change in total contacts0.50.71.00.1-1.0-1.0
Pavlov. Cond. index score1.11.41.8-1.0-1.3-1.2
Pavlov. Cond. latency score1.21.52.0-0.9-1.4-1.3
Pavlov. Cond. lever contacts1.31.92.80.7-1.5-1.7
Pavlov. Cond. magazine entry number2.53.14.82.21.71.3
Pavlov. Cond. intertrial magazine entries1.31.75.12.30.3-0.0
Pavlov. Cond. lever-magazine prob. diff.1.31.72.0-1.2-1.4-1.3
Pavlov. Cond. response bias0.91.31.9-0.5-1.4-1.3
Conditioned reinforcement - actives0.50.50.7-0.6-0.8-0.7
Conditioned reinforcement - inactives0.10.10.1-0.30.40.0
Conditioned locomotion0.10.20.3-0.2-0.6-0.4
Intermittent access intake day 1-15 change1.21.22.1-0.8-0.9-1.5
Intermittent access intake escalation2.22.23.3-1.2-1.3-1.8
Intermittent access intake escalation 20.30.30.6-0.80.2-0.4
Intermitt. access day 1 inactive lever presses0.20.20.50.70.20.1
Intermitt. access day 15 inactive lever presses0.91.02.11.4-0.4-0.9
Intermitt. access escalation Index2.42.13.11.0-1.5-1.8
Intermittent access day 1 total infusions0.00.00.10.3-0.0-0.1
Intermittent access day 15 total infusions0.80.81.7-0.3-0.9-1.3
Intermittent access terminal intake (last 3 days)0.70.71.5-0.2-0.8-1.2
Intermittent access total infusions0.40.50.90.0-0.6-1.0
Intermittent access day 1 locomotion0.10.20.40.6-0.2-0.2
Intermittent access day 15 total locomotion0.10.10.20.4-0.2-0.4
Intermittent access total locomotion0.10.10.20.4-0.2-0.3
Intermittent access standard deviation1.82.02.4-1.61.31.3
Cocaine induced anxiety3.74.27.81.12.82.0
Post-drug Anxiety2.02.33.50.91.91.5
Baseline Anxiety0.40.51.3-0.3-1.1-0.2
Lifetime Intake0.30.40.6-0.5-0.5-0.8
Incentive Sensitization - Responses0.40.40.7-0.4-0.4-0.9
Incentive Sensitization - Breakpoint0.30.30.6-0.3-0.3-0.7
Progressive ratio test 1 active lever presses1.01.01.70.7-1.0-1.3
Progressive ratio test 1 breakpoint1.11.11.80.8-1.0-1.3
Progressive ratio test 1 inactive lever presses0.50.51.01.0-0.2-0.7
Progressive ratio test 2 active lever presses0.30.30.7-0.2-0.5-0.9
Progressive ratio test 2 breakpoint0.60.61.30.0-0.8-1.2
Progressive ratio test 2 inactive lever presses0.20.30.60.80.40.0
Total sessions with >9 infusions0.20.20.6-0.7-0.2-0.1
Short access day 1 total inactive lever presses0.40.40.7-0.2-0.8-0.7
Short access day 10 total inactive lever presses0.60.61.31.10.80.2
Short access day 1 total infusions0.50.51.1-1.10.40.6
Short access day 10 total infusions0.20.20.4-0.2-0.2-0.6
Short access total infusions0.20.30.7-0.8-0.1-0.3
Short access day 1 locomotion0.90.91.50.11.21.2
Short access day 10 total locomotion0.91.01.4-0.41.11.2
Short access total locomotion0.70.71.2-0.10.91.1
Compulsive drug intake0.20.20.20.50.40.3
One hour access (0.3 mA shock)0.50.61.40.1-0.6-1.2
One hour access (shock baseline)1.01.21.9-0.5-1.2-1.4
Number of responses in last shaping day0.40.40.60.80.50.6
Context. condit. distance diff. score1.82.23.10.7-1.8-1.7
Locomotion velocity, session 11.81.92.6-1.21.31.6
Locomotion distance, session 10.10.20.5-0.3-0.70.1
Locomotion velocity, session 21.11.33.1-1.80.10.9
Locomotion distance, session 20.20.20.6-0.2-0.8-0.2
Locomotion velocity, session 30.81.01.9-0.30.91.4
Locomotion distance, session 30.70.81.2-1.00.41.1
Stereotopy head waving bouts, day 30.70.81.40.60.91.2
Stereotopy head waving duration, day 30.40.40.70.50.60.8
Locomotion velocity, session 70.30.30.4-0.6-0.6-0.3
Locomotion distance, session 71.31.62.2-1.4-1.5-0.8
Stereotopy head waving bouts, day 70.20.20.40.60.50.4
Stereotopy head waving duration, day 70.30.40.80.90.60.3
Locomotion velocity, session 80.50.61.61.3-0.3-0.1
Locomotion distance, session 81.92.85.00.7-2.2-1.7
Degree of sensitization distance1.51.52.60.1-1.4-1.6
Degree of sensitization stereotypy0.10.10.10.30.40.2
Condit. Reinf. active minus inactive responses0.80.92.41.60.1-0.5
Condit. Reinf. active-inactive response ratio1.51.64.62.10.50.1
Condit. Reinf. active responses0.60.81.11.1-0.3-1.0
Condit. Reinf. inactive responses0.60.71.2-0.7-0.7-1.1
Incentive salience index mean0.60.71.31.1-0.4-0.9
Condit. Reinf. lever presses0.91.21.6-0.8-1.3-1.2
Time in familiar zone, hab. session 10.70.71.1-0.31.10.9
Time in novel zone, hab. session 10.20.20.3-0.2-0.5-0.6
Total zone transitions, hab. session 10.20.20.5-0.70.00.4
Total locomotion distance, hab. session 10.10.10.2-0.4-0.2-0.1
Locomotion velocity, hab. session 10.10.10.2-0.4-0.5-0.3
Time in familiar zone, hab. session 20.60.61.2-1.1-0.7-0.5
Time in novel zone, hab. session 20.50.50.60.80.70.6
Total zone transitions, hab. session 20.40.61.2-0.1-1.1-0.7
Total locomotion distance, hab. session 21.11.42.3-0.1-1.5-1.4
Locomotion velocity, hab. session 20.91.21.90.2-1.4-1.3
Novel to familiar place preference ratio2.22.32.91.71.71.1
Novelty place preference2.42.53.41.81.71.2
Time in novel zone, NPP test1.92.02.61.61.51.1
Total zone transitions, NPP test1.72.54.7-0.0-2.2-1.6
Total locomotion distance, NPP test2.13.04.9-0.6-2.2-1.9
Locomotion velocity, NPP test1.62.23.8-0.2-1.9-1.7
Pavlov. Cond. lever latency0.50.61.1-0.3-1.1-0.8
Pavlov. Cond. magazine entry latency0.91.21.51.21.20.8
Pavlov. Cond. change in total contacts1.21.32.0-0.31.41.3
Pavlov. Cond. index score0.60.71.51.20.80.4
Pavlov. Cond. latency score0.50.60.80.90.80.5
Pavlov. Cond. lever contacts0.00.00.10.10.30.2
Pavlov. Cond. magazine entry number1.41.72.9-0.7-1.7-1.3
Pavlov. Cond. intertrial magazine entries0.60.71.20.2-0.9-1.1
Pavlov. Cond. lever-magazine prob. diff.0.91.22.21.51.00.6
Pavlov. Cond. response bias0.91.11.90.71.41.0
Bone: apparent density0.40.61.61.3-0.3-0.4
Bone surface0.50.81.21.1-0.7-0.9
Bone volume0.40.60.91.0-0.6-0.8
Bone: connectivity density0.71.11.30.9-1.1-1.1
Bone: cortical apparent density0.81.02.1-1.50.50.8
Bone: cortical area8.713.218.14.33.33.2
Bone: cortical porosity2.72.95.00.22.21.9
Bone: cortical porosity2.02.13.70.41.91.6
Bone: cortical thickness12.620.824.33.84.94.9
Bone: cortical thickness6.67.811.21.33.33.2
Bone: cortical tissue density0.91.22.9-1.70.40.6
Bone: elastic displacement1.21.42.11.51.20.8
Bone: elastic work7.910.312.13.33.52.8
Bone: endosteal estimation1.12.33.20.8-1.8-1.8
Bone: endosteal perimeter1.12.45.82.4-0.6-1.0
Bone: final force6.610.914.43.83.22.9
Bone: final moment7.312.016.74.13.32.9
Bone: marrow area1.02.23.00.8-1.7-1.7
Bone: maximum diameter2.03.68.42.91.11.1
Bone: maximum force6.010.416.14.02.92.6
Bone: maximum moment6.511.418.34.33.02.6
Bone: minimum diameter2.64.812.23.51.20.9
Bone: periosteal estimation2.04.110.73.31.00.9
Bone: periosteal perimeter4.27.012.53.52.21.9
Bone: post-yield work0.40.61.61.3-0.2-0.3
Bone: stiffness2.33.65.21.12.12.3
Bone: tissue strength1.21.13.41.8-0.10.2
Bone: trabecular number0.10.10.10.3-0.4-0.3
Bone: trabecular spacing1.31.72.70.1-1.6-1.6
Bone: trabecular thickness1.72.13.11.21.81.4
Bone: trabecular tissue density0.50.72.1-1.4-0.00.1
Breakpoint value in progressive ratio session0.80.81.1-0.61.11.1
Distance traveled before self-admin1.31.42.41.51.10.7
Distance traveled after self-admin2.32.64.1-0.5-1.8-2.0
Delta time in closed arm before/after self-admin0.20.20.30.1-0.6-0.5
Delta time in open arm before/after self-admin0.10.10.1-0.40.1-0.1
Diff in mean of infusions in LGA sessions0.40.41.0-1.0-0.4-0.1
Extinction: sum of active levers before priming3.03.04.4-1.02.02.1
Active lever presses in extinction session 63.83.65.9-0.82.12.4
Delta distance traveled before/after self-admin3.43.64.2-1.6-2.0-2.0
Delta ambulatory time before/after self-admin4.65.05.9-2.1-2.4-2.2
Time in closed arm before self-admin0.80.91.4-0.41.11.2
Time in closed arm after self-admin1.21.21.6-0.91.21.2
Time in open arm before self-admin0.60.61.21.1-0.6-0.5
Time in open arm after self-admin0.20.20.50.7-0.2-0.1
Sum of active levers in priming session hrs 5-60.80.71.2-0.51.10.8
Time to tail flick, vehicle, before self-admin0.10.10.20.1-0.2-0.4
Time to tail flick, vehicle, after self-admin0.30.30.5-0.60.30.7
Time to tail flick, test, before self-admin1.01.02.4-1.6-0.6-0.5
Time to tail flick, test, after self-admin0.30.30.8-0.90.20.3
Delta time to tail flick, vehicle, before/after SA0.60.61.0-1.0-0.7-0.5
Delta time to tail flick, test, before/after SA2.01.82.90.31.61.7
Ambulatory time before self-admin2.02.13.31.81.40.9
Ambulatory time after self-admin0.60.71.2-0.0-0.9-1.1
Total heroin consumption4.04.77.30.32.62.7
Area under the delay curve0.20.20.3-0.60.10.5
Delay disc. indifference point, 0s delay1.11.21.91.40.81.0
Delay disc. indifference point, 16s delay1.11.11.5-1.2-1.2-0.6
Delay disc. indifference point, 2s delay0.20.20.4-0.20.50.6
Delay disc. indifference point, 24s delay1.01.01.2-1.10.61.1
Delay disc. indifference point, 4s delay0.40.50.60.70.60.7
Delay disc. indifference point, 8s delay0.50.50.9-0.00.71.0
Delay discount exponential model param0.40.40.70.8-0.3-0.7
Delay discount hyperbolic model param0.30.40.50.7-0.3-0.7
Fecal boli incidents, locomotor time 10.60.61.6-1.2-0.4-0.4
Change in fecal boli incidents, locomotor task1.21.12.1-1.50.70.8
Time >=10cm from walls, locomotor time 13.43.54.62.1-1.4-2.0
Bouts of movement, locomotor time 10.50.61.0-1.00.50.7
Total resting periods, locomotor time 10.80.91.5-1.20.60.9
Rest time, locomotor task time 10.50.51.3-1.10.40.4
Distance moved, locomotor task time 10.40.40.50.7-0.6-0.6
Vertical activity count, locomotor time 10.60.61.11.0-0.7-0.7
Time >=10cm from walls, locomotor time 21.21.33.11.80.70.5
Bouts of movement, locomotor time 20.00.00.1-0.1-0.30.1
Total resting periods, locomotor time 20.20.20.5-0.0-0.7-0.4
Rest time, locomotor task time 21.31.51.7-1.2-1.3-1.2
Distance moved, locomotor task time 20.80.91.30.71.01.1
Vertical activity count, locomotor time 20.50.60.90.90.60.7
Weight adjusted by age2.12.44.92.21.30.8
Seeking ratio, delayed vs. immediate footshock0.50.61.71.30.1-0.4
Locomotion in novel chamber0.10.10.30.5-0.3-0.2
Locomotion in novel chamber post-restriction0.60.71.40.4-0.6-1.2
Progressive ratio0.00.10.10.10.10.3
Food seeking constrained by brief footshock0.00.00.0-0.20.20.2
Seeking ratio, punishment vs. effort0.20.20.40.3-0.4-0.6
Run reversals in cocaine runway, females0.40.40.80.1-0.9-0.7
Run reversals in cocaine runway, males0.20.20.6-0.20.80.3
Latency to leave start box in cocaine runway1.21.32.0-1.4-1.1-0.8
Latency to leave start box in cocaine runway, F1.61.82.1-1.4-1.5-1.1
Latency to leave start box in cocaine runway, M0.20.20.4-0.6-0.4-0.3
Cd content in liver0.60.71.4-1.20.30.7
Co content in liver0.20.30.6-0.1-0.7-0.5
Cu content in liver0.40.50.9-0.20.90.8
Fe content in liver0.50.60.9-0.5-1.0-0.7
K content in liver2.22.23.50.0-1.7-1.9
Mg content in liver3.94.15.7-1.3-2.4-2.2
Mn content in liver0.20.20.40.00.40.6
Na content in liver0.10.10.10.1-0.4-0.3
Rb content in liver0.20.20.30.5-0.2-0.5
Se content in liver0.70.91.80.3-0.9-1.4
Sr content in liver1.41.32.00.51.41.3
Zn content in liver0.10.20.3-0.2-0.5-0.4