Fn3k

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain alternative polyA ENSRNOT00000105585 0.04 0.03 1.0e-03 0.01 0.02 0.01 0.01 1.4e-02 3.0e-03 2.7e-02 1.4e-02
2 Brain gene expression ENSRNOG00000036659 0.11 0.06 1.4e-04 0.07 0.04 0.06 0.06 8.7e-07 4.5e-05 2.3e-06 2.0e-06
3 OFC gene expression ENSRNOG00000036659 0.4 0.14 3.9e-05 0.04 0.07 0.06 0.05 3.5e-02 7.8e-03 2.0e-02 2.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.93.16.0-1.72.40.5
BMI without tail5.611.819.1-4.4-2.1-3.4
Body weight1.87.718.2-4.32.2-0.4
Epididymis fat weight0.41.02.2-1.5-0.3-0.8
Glucose8.412.815.93.43.34.0
Heart weight1.31.83.5-1.21.90.7
Left kidney weight1.33.87.9-0.72.81.7
Right kidney weight1.23.47.9-0.62.81.4
Tail length5.316.221.6-4.6-3.4-3.9
Length with tail0.72.67.4-2.70.3-0.5
Length without tail5.211.317.61.54.23.8
Liver weight, left1.42.22.91.01.61.7
Liver weight, right0.50.92.5-1.60.4-0.1
Parametrial fat weight0.30.51.2-1.1-0.4-0.5
Retroperitoneal fat weight2.06.513.6-3.7-1.3-2.1
Intraocular pressure1.31.82.8-1.7-0.9-1.4
Extensor digitorum longus weight0.52.02.7-1.6-1.2-1.4
Soleus weight0.82.44.9-2.2-0.8-1.2
Tibialis anterior weight0.41.31.7-1.0-1.3-1.1
Tibia length4.713.224.2-4.93.71.2
Number of licking bursts0.60.70.9-0.6-0.9-0.9
Food consumed during 24 hour testing period0.70.81.6-0.6-1.2-0.7
Times rat made contact with spout0.60.61.9-0.0-1.4-0.1
Mean time between licks in bursts0.60.82.11.40.30.4
Mean num. licks in bursts0.10.10.20.3-0.10.5
Std. dev. time between licks in bursts2.93.45.7-1.9-1.1-2.4
Water consumed over 24 hours0.30.40.60.8-0.20.7
Indifference point 0 sec0.00.10.1-0.1-0.3-0.3
Indifference point AUC0.10.10.1-0.1-0.4-0.3
Indifference point function ln k0.20.30.40.50.70.4
Indifference point function log k0.20.30.40.50.70.4
Delay discounting total patch changes 0 sec0.10.10.2-0.2-0.2-0.5
Delay discounting total patch changes 12 sec0.10.10.20.5-0.10.1
Delay discounting total patch changes 18 sec0.30.40.7-0.2-0.6-0.9
Delay discounting total patch changes 24 sec0.20.20.3-0.5-0.1-0.5
Delay discounting total patch changes 6 sec0.00.00.1-0.2-0.1-0.2
Delay discounting time to switch 0 sec0.20.30.70.8-0.40.3
Delay discounting water rate 0 sec0.91.42.4-1.6-0.3-1.3
Delay discounting water rate 12 sec0.30.50.8-0.70.9-0.2
Delay discounting water rate 18 sec1.01.32.6-1.60.1-1.1
Delay discounting water rate 24 sec1.92.65.4-2.30.1-1.6
Delay discounting water rate 6 sec0.60.82.4-0.31.50.1
Locomotor activity0.40.61.31.10.30.6
Locomotor testing distance0.10.20.50.7-0.30.2
Locomotor testing rearing0.50.91.50.8-1.2-0.6
Light reinforcement 11.32.32.8-1.5-1.7-1.4
Light reinforcement 20.91.22.5-1.6-0.6-0.8
Reaction time number correct2.94.16.7-1.8-1.5-2.6
Reaction time mean minus median0.70.91.71.30.20.9
Reaction time mean minus median AUC0.10.10.20.4-0.10.3
Reaction time num false alarms0.00.10.10.2-0.00.4
Reaction time num false alarms AUC0.10.10.20.5-0.20.2
Reaction time trials correct on left2.94.16.7-1.8-1.5-2.6
Reaction time trials on left3.04.27.0-1.8-1.6-2.6
Reaction time mean0.00.00.1-0.3-0.1-0.1
Reaction time mean AUC0.20.30.4-0.6-0.4-0.6
Median of all reaction times0.10.20.4-0.6-0.0-0.3
Reaction time omissions0.40.61.0-0.0-1.0-0.9
Reaction time false alarm rate1.01.42.21.30.51.5
Reaction time premature initiation rate0.40.51.41.2-0.00.5
Reaction time premature initiations0.50.71.10.0-1.0-1.0
Std. dev. reaction times0.20.20.70.8-0.10.2
Reaction time trials completed3.04.27.0-1.8-1.6-2.6
Reaction time trials AUC2.94.26.8-1.9-1.5-2.6
Social response proportion0.30.30.60.40.80.3
Social responses0.10.20.40.30.70.2
Social time0.20.30.7-0.20.80.3
Conditioned locomotion3.84.68.6-2.9-1.2-1.9
Cocaine response after cond. corrected0.40.40.60.80.30.7
Cocaine response after cond. not corrected0.50.61.21.10.20.7
Cocaine response before conditioning0.10.10.20.4-0.2-0.4
Saline control response1.72.23.8-1.9-0.8-1.5
Condit. Reinf. active minus inactive responses1.21.54.0-2.00.6-0.3
Condit. Reinf. active-inactive response ratio1.31.33.5-1.90.70.1
Condit. Reinf. active responses0.60.82.2-1.50.4-0.4
Condit. Reinf. inactive responses0.00.10.10.20.3-0.2
Condit. Reinf. lever presses0.50.71.0-1.0-0.5-1.0
Condit. Reinf. lever reinforcers received0.60.92.3-1.50.1-0.6
Pavlov. Cond. lever latency1.41.92.21.51.21.4
Pavlov. Cond. magazine entry latency0.80.91.50.8-1.2-0.8
Pavlov. Cond. change in total contacts0.40.60.8-0.4-0.9-0.9
Pavlov. Cond. index score0.60.81.5-0.2-1.2-1.0
Pavlov. Cond. latency score0.81.11.7-0.4-1.3-1.1
Pavlov. Cond. lever contacts2.23.03.2-1.8-1.6-1.8
Pavlov. Cond. magazine entry number0.91.12.1-0.71.40.9
Pavlov. Cond. intertrial magazine entries1.21.53.9-2.00.2-0.8
Pavlov. Cond. lever-magazine prob. diff.0.70.91.8-0.0-1.3-1.0
Pavlov. Cond. response bias0.91.31.8-0.7-1.3-1.2
Conditioned reinforcement - actives0.50.50.8-0.3-0.7-0.9
Conditioned reinforcement - inactives0.10.10.1-0.4-0.1-0.4
Conditioned locomotion0.30.30.6-0.2-0.6-0.8
Intermittent access intake day 1-15 change1.01.02.0-0.2-1.4-1.0
Intermittent access intake escalation1.61.63.0-0.3-1.7-1.3
Intermittent access intake escalation 20.00.00.1-0.0-0.4-0.1
Intermitt. access day 1 inactive lever presses0.00.00.1-0.30.00.1
Intermitt. access day 15 inactive lever presses1.51.72.4-1.4-0.8-1.5
Intermitt. access escalation Index2.82.53.3-1.4-1.8-1.5
Intermittent access day 1 total infusions0.40.41.0-1.0-0.2-0.4
Intermittent access day 15 total infusions1.11.21.7-0.8-1.3-1.1
Intermittent access terminal intake (last 3 days)1.01.11.8-0.7-1.3-1.0
Intermittent access total infusions0.91.01.0-1.0-1.0-1.0
Intermittent access day 1 locomotion0.30.30.4-0.7-0.2-0.7
Intermittent access day 15 total locomotion0.30.30.5-0.6-0.4-0.7
Intermittent access total locomotion0.30.30.5-0.6-0.2-0.7
Intermittent access standard deviation2.32.53.61.91.31.5
Cocaine induced anxiety1.71.93.0-0.11.71.7
Post-drug Anxiety1.11.21.80.51.31.3
Baseline Anxiety0.50.61.61.3-0.0-0.2
Lifetime Intake0.30.40.7-0.3-0.8-0.6
Incentive Sensitization - Responses0.60.60.9-0.7-0.9-0.7
Incentive Sensitization - Breakpoint0.50.50.7-0.6-0.8-0.5
Progressive ratio test 1 active lever presses1.31.41.5-1.1-1.2-1.2
Progressive ratio test 1 breakpoint1.71.71.8-1.4-1.3-1.2
Progressive ratio test 1 inactive lever presses1.01.11.9-1.4-0.5-1.0
Progressive ratio test 2 active lever presses0.50.60.7-0.7-0.9-0.7
Progressive ratio test 2 breakpoint1.01.11.3-1.0-1.1-1.0
Progressive ratio test 2 inactive lever presses0.10.10.2-0.40.0-0.1
Total sessions with >9 infusions0.00.00.00.2-0.0-0.0
Short access day 1 total inactive lever presses0.30.30.4-0.4-0.6-0.6
Short access day 10 total inactive lever presses0.50.61.6-1.30.2-0.3
Short access day 1 total infusions1.31.32.71.60.51.0
Short access day 10 total infusions0.30.30.7-0.3-0.8-0.4
Short access total infusions0.10.10.20.3-0.4-0.1
Short access day 1 locomotion1.31.31.61.01.21.3
Short access day 10 total locomotion1.01.11.41.20.91.0
Short access total locomotion0.90.90.90.90.90.9
Compulsive drug intake0.30.30.7-0.90.2-0.4
One hour access (0.3 mA shock)1.72.02.0-1.4-1.4-1.4
One hour access (shock baseline)1.21.42.2-0.8-1.5-1.1
Number of responses in last shaping day0.30.40.5-0.70.7-0.0
Context. condit. distance diff. score2.12.63.2-1.5-1.5-1.8
Locomotion velocity, session 13.43.75.02.21.32.1
Locomotion distance, session 10.10.20.40.60.30.0
Locomotion velocity, session 22.12.55.22.31.01.2
Locomotion distance, session 20.20.20.6-0.4-0.0-0.7
Locomotion velocity, session 32.02.33.41.81.31.3
Locomotion distance, session 32.02.13.82.01.21.0
Stereotopy head waving bouts, day 30.80.91.20.81.01.1
Stereotopy head waving duration, day 30.30.30.50.20.70.6
Locomotion velocity, session 70.30.30.60.8-0.60.0
Locomotion distance, session 70.70.91.61.3-0.9-0.6
Stereotopy head waving bouts, day 70.20.30.7-0.80.30.1
Stereotopy head waving duration, day 70.30.30.8-0.90.40.1
Locomotion velocity, session 80.30.30.6-0.60.2-0.8
Locomotion distance, session 82.74.06.0-2.1-1.2-2.4
Degree of sensitization distance2.32.33.6-1.0-1.9-1.5
Degree of sensitization stereotypy0.30.30.9-1.00.4-0.0
Condit. Reinf. active minus inactive responses1.31.53.5-1.9-0.5-0.9
Condit. Reinf. active-inactive response ratio0.70.71.9-1.40.1-0.5
Condit. Reinf. active responses2.42.95.9-2.4-0.9-1.4
Condit. Reinf. inactive responses0.70.90.9-0.9-0.9-0.9
Incentive salience index mean1.31.63.0-1.7-0.8-1.1
Condit. Reinf. lever presses0.50.71.2-0.2-1.1-0.9
Time in familiar zone, hab. session 10.60.60.90.50.90.9
Time in novel zone, hab. session 10.20.20.3-0.1-0.5-0.5
Total zone transitions, hab. session 10.10.10.30.30.60.1
Total locomotion distance, hab. session 10.20.30.6-0.8-0.1-0.6
Locomotion velocity, hab. session 10.30.40.8-0.9-0.1-0.7
Time in familiar zone, hab. session 20.10.10.30.5-0.4-0.1
Time in novel zone, hab. session 20.20.20.6-0.10.70.2
Total zone transitions, hab. session 20.60.81.3-1.0-0.4-1.2
Total locomotion distance, hab. session 22.12.73.3-1.8-1.3-1.8
Locomotion velocity, hab. session 22.23.04.3-2.1-1.2-1.8
Novel to familiar place preference ratio0.80.81.1-0.91.00.8
Novelty place preference0.90.91.1-0.91.10.9
Time in novel zone, NPP test0.70.81.0-0.91.00.7
Total zone transitions, NPP test1.52.23.5-0.9-1.5-1.9
Total locomotion distance, NPP test2.53.44.9-1.5-1.8-2.2
Locomotion velocity, NPP test2.12.93.7-1.5-1.7-1.9
Pavlov. Cond. lever latency0.40.61.1-0.3-0.7-1.1
Pavlov. Cond. magazine entry latency0.40.50.8-0.40.90.7
Pavlov. Cond. change in total contacts1.31.42.00.81.21.4
Pavlov. Cond. index score0.30.30.7-0.80.40.4
Pavlov. Cond. latency score0.20.30.4-0.50.50.6
Pavlov. Cond. lever contacts0.00.10.1-0.00.20.4
Pavlov. Cond. magazine entry number1.11.32.1-0.1-1.5-1.4
Pavlov. Cond. intertrial magazine entries1.11.31.4-1.1-1.2-1.2
Pavlov. Cond. lever-magazine prob. diff.0.40.50.8-0.90.70.4
Pavlov. Cond. response bias0.70.81.3-0.11.11.1
Bone: apparent density0.30.50.9-0.9-0.5-0.7
Bone surface0.50.91.2-1.0-1.1-0.7
Bone volume0.50.81.1-0.9-1.0-0.7
Bone: connectivity density0.81.31.7-0.8-1.2-1.3
Bone: cortical apparent density1.82.35.42.30.71.1
Bone: cortical area6.19.314.6-3.53.80.8
Bone: cortical porosity2.32.54.40.61.72.1
Bone: cortical porosity1.41.52.60.11.41.6
Bone: cortical thickness8.514.030.2-2.85.52.0
Bone: cortical thickness4.14.911.0-1.13.31.5
Bone: cortical tissue density2.02.76.52.60.51.1
Bone: elastic displacement0.50.50.9-1.00.80.1
Bone: elastic work3.54.57.1-2.12.71.4
Bone: endosteal estimation0.81.72.6-1.0-1.6-1.2
Bone: endosteal perimeter0.61.32.5-1.6-0.8-0.8
Bone: final force4.67.512.0-3.53.20.6
Bone: final moment4.87.912.7-3.63.20.8
Bone: marrow area0.71.62.3-1.0-1.5-1.2
Bone: maximum diameter1.42.55.0-2.21.60.0
Bone: maximum force4.57.914.8-3.83.00.4
Bone: maximum moment4.78.215.4-3.93.00.6
Bone: minimum diameter1.42.76.7-2.61.2-0.1
Bone: periosteal estimation1.73.48.4-2.91.3-0.2
Bone: periosteal perimeter2.23.65.2-2.22.30.9
Bone: post-yield work0.20.30.6-0.8-0.2-0.5
Bone: stiffness2.13.46.6-1.72.60.7
Bone: tissue strength1.81.84.2-2.10.7-0.8
Bone: trabecular number0.10.10.2-0.2-0.5-0.3
Bone: trabecular spacing2.02.64.0-1.5-1.2-2.0
Bone: trabecular thickness1.01.22.80.50.81.7
Bone: trabecular tissue density0.20.30.90.9-0.20.3
Breakpoint value in progressive ratio session1.01.21.70.71.11.3
Distance traveled before self-admin0.10.10.2-0.30.50.3
Distance traveled after self-admin2.42.64.7-0.5-2.2-1.7
Delta time in closed arm before/after self-admin0.10.10.30.1-0.5-0.2
Delta time in open arm before/after self-admin0.10.10.20.4-0.2-0.2
Diff in mean of infusions in LGA sessions0.50.61.41.2-0.30.5
Extinction: sum of active levers before priming4.04.04.52.01.92.1
Active lever presses in extinction session 65.04.86.61.82.62.1
Delta distance traveled before/after self-admin1.81.93.80.3-2.0-1.3
Delta ambulatory time before/after self-admin2.22.45.20.8-2.3-1.2
Time in closed arm before self-admin0.80.91.70.51.30.9
Time in closed arm after self-admin1.81.92.31.51.01.5
Time in open arm before self-admin0.10.20.2-0.5-0.5-0.2
Time in open arm after self-admin0.00.00.0-0.1-0.1-0.1
Sum of active levers in priming session hrs 5-60.50.50.90.50.51.0
Time to tail flick, vehicle, before self-admin0.40.40.8-0.6-0.2-0.9
Time to tail flick, vehicle, after self-admin0.60.60.90.90.70.7
Time to tail flick, test, before self-admin0.20.20.30.2-0.5-0.6
Time to tail flick, test, after self-admin0.50.51.41.20.20.3
Delta time to tail flick, vehicle, before/after SA0.20.20.60.3-0.8-0.1
Delta time to tail flick, test, before/after SA2.82.53.31.21.71.8
Ambulatory time before self-admin0.30.30.5-0.70.70.2
Ambulatory time after self-admin0.60.71.2-0.2-1.1-1.0
Total heroin consumption3.94.68.40.72.92.3
Area under the delay curve0.60.61.51.20.50.4
Delay disc. indifference point, 0s delay0.40.41.0-0.01.00.4
Delay disc. indifference point, 16s delay0.40.40.50.7-0.5-0.7
Delay disc. indifference point, 2s delay0.40.40.50.70.70.6
Delay disc. indifference point, 24s delay3.13.05.72.41.11.5
Delay disc. indifference point, 4s delay0.20.20.40.50.60.1
Delay disc. indifference point, 8s delay1.21.21.51.21.01.1
Delay discount exponential model param1.11.12.5-1.6-0.7-0.7
Delay discount hyperbolic model param1.01.12.3-1.5-0.7-0.6
Fecal boli incidents, locomotor time 10.10.10.10.3-0.4-0.2
Change in fecal boli incidents, locomotor task3.33.26.22.50.51.8
Time >=10cm from walls, locomotor time 13.23.24.3-1.5-1.7-2.1
Bouts of movement, locomotor time 10.91.01.61.30.61.0
Total resting periods, locomotor time 11.31.42.41.50.81.2
Rest time, locomotor task time 10.30.30.40.60.10.6
Distance moved, locomotor task time 10.20.20.4-0.2-0.5-0.6
Vertical activity count, locomotor time 10.80.81.2-1.0-0.5-1.1
Time >=10cm from walls, locomotor time 20.50.61.1-1.10.7-0.2
Bouts of movement, locomotor time 20.30.30.80.90.00.5
Total resting periods, locomotor time 20.10.10.20.4-0.4-0.1
Rest time, locomotor task time 20.40.51.50.2-1.2-0.3
Distance moved, locomotor task time 20.30.41.00.11.00.3
Vertical activity count, locomotor time 20.50.60.9-0.80.9-0.3
Weight adjusted by age1.01.12.3-1.51.00.3
Seeking ratio, delayed vs. immediate footshock0.91.02.0-1.4-0.4-0.9
Locomotion in novel chamber0.00.00.0-0.10.00.1
Locomotion in novel chamber post-restriction1.41.73.3-1.8-0.9-1.0
Progressive ratio0.10.10.20.40.30.4
Food seeking constrained by brief footshock0.20.30.60.8-0.00.5
Seeking ratio, punishment vs. effort0.30.30.4-0.4-0.7-0.6
Run reversals in cocaine runway, females0.20.20.4-0.1-0.7-0.5
Run reversals in cocaine runway, males0.10.10.2-0.20.10.5
Latency to leave start box in cocaine runway0.20.30.60.0-0.7-0.5
Latency to leave start box in cocaine runway, F0.80.91.3-0.6-1.0-1.1
Latency to leave start box in cocaine runway, M0.10.10.20.3-0.50.2
Cd content in liver0.80.81.41.20.80.7
Co content in liver0.10.10.20.4-0.4-0.1
Cu content in liver0.50.60.70.50.80.8
Fe content in liver0.30.30.70.9-0.4-0.2
K content in liver3.43.44.1-1.5-2.0-2.0
Mg content in liver3.53.65.4-0.8-2.2-2.3
Mn content in liver0.20.20.5-0.30.7-0.1
Na content in liver0.10.10.20.3-0.4-0.2
Rb content in liver1.41.73.0-1.7-0.3-1.4
Se content in liver1.01.22.3-0.3-1.5-1.2
Sr content in liver1.71.52.11.11.21.5
Zn content in liver0.00.00.00.0-0.2-0.1