Dclk3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000033026 0.33 0.11 0.0e+00 0.11 0.13 0.16 0.14 4.2e-12 1.2e-14 4.0e-17 1.9e-15
2 IL gene expression ENSRNOG00000033026 0.39 0.18 5.3e-05 0.18 0.11 0.17 0.2 4.1e-05 1.5e-03 6.4e-05 1.2e-05
3 Liver gene expression ENSRNOG00000033026 0.68 0.09 0.0e+00 0.22 0.4 0.38 0.39 7.8e-24 8.5e-47 2.8e-44 1.9e-45
4 NAcc mRNA stability ENSRNOG00000033026 0.05 0.03 1.5e-03 0.04 0.02 0.03 0.04 6.1e-04 8.0e-03 2.3e-03 9.5e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.62.04.1-2.0-1.7-0.30.9
BMI without tail1.32.74.8-1.7-2.20.51.7
Body weight6.326.537.8-6.1-5.63.25.1
Epididymis fat weight0.51.23.5-1.9-0.70.40.7
Glucose0.10.20.3-0.1-0.60.10.6
Heart weight2.43.54.3-2.1-1.71.81.8
Left kidney weight0.41.21.7-1.2-1.3-0.41.2
Right kidney weight0.10.30.5-0.7-0.7-0.50.4
Tail length5.516.520.2-3.7-4.53.44.5
Length with tail8.230.134.7-5.7-5.84.45.9
Length without tail6.714.721.5-4.6-3.82.93.8
Liver weight, left0.00.10.2-0.2-0.00.50.2
Liver weight, right0.81.42.0-1.4-1.40.61.2
Parametrial fat weight0.51.01.5-0.6-1.20.71.2
Retroperitoneal fat weight0.51.84.2-2.0-1.00.61.2
Intraocular pressure1.62.35.1-1.0-1.02.31.4
Extensor digitorum longus weight0.10.40.60.60.8-0.3-0.8
Soleus weight3.49.812.9-3.2-3.62.23.4
Tibialis anterior weight0.00.10.3-0.5-0.30.10.1
Tibia length6.117.326.0-5.1-4.81.84.1
Number of licking bursts0.10.10.10.10.40.2-0.3
Food consumed during 24 hour testing period1.51.92.2-1.4-1.51.31.3
Times rat made contact with spout0.40.51.0-0.4-0.61.00.6
Mean time between licks in bursts0.71.01.31.01.1-0.6-1.1
Mean num. licks in bursts0.30.40.6-0.3-0.80.50.7
Std. dev. time between licks in bursts2.22.63.71.31.9-1.1-1.9
Water consumed over 24 hours0.00.00.1-0.3-0.00.1-0.1
Indifference point 0 sec1.01.62.0-1.4-1.21.11.3
Indifference point AUC0.10.20.6-0.0-0.3-0.7-0.0
Indifference point function ln k0.10.10.50.20.2-0.7-0.1
Indifference point function log k0.10.10.50.20.2-0.7-0.1
Delay discounting total patch changes 0 sec1.42.33.1-1.8-1.41.41.4
Delay discounting total patch changes 12 sec0.50.60.8-0.9-0.80.70.8
Delay discounting total patch changes 18 sec2.43.23.8-1.6-2.01.71.8
Delay discounting total patch changes 24 sec2.63.24.1-2.0-2.01.31.8
Delay discounting total patch changes 6 sec0.00.10.1-0.2-0.20.30.2
Delay discounting time to switch 0 sec0.20.30.60.80.60.2-0.4
Delay discounting water rate 0 sec0.40.61.1-1.0-0.80.50.6
Delay discounting water rate 12 sec0.30.50.7-0.7-0.80.50.8
Delay discounting water rate 18 sec0.50.72.5-1.6-0.4-0.20.0
Delay discounting water rate 24 sec0.81.22.4-1.5-0.90.81.0
Delay discounting water rate 6 sec0.30.41.0-0.5-1.0-0.20.6
Locomotor activity5.48.510.9-2.6-3.12.53.3
Locomotor testing distance5.18.410.8-2.5-3.22.53.3
Locomotor testing rearing0.60.92.1-0.5-0.71.40.9
Light reinforcement 10.40.71.4-1.2-0.90.30.9
Light reinforcement 20.40.51.5-0.10.5-1.2-0.4
Reaction time number correct0.20.30.40.60.60.1-0.5
Reaction time mean minus median0.10.10.20.4-0.2-0.10.2
Reaction time mean minus median AUC0.20.20.3-0.0-0.50.50.5
Reaction time num false alarms0.30.40.70.90.80.0-0.4
Reaction time num false alarms AUC0.10.20.30.50.60.3-0.1
Reaction time trials correct on left0.20.30.40.60.60.1-0.5
Reaction time trials on left0.20.30.50.70.70.1-0.5
Reaction time mean0.00.10.10.3-0.10.30.2
Reaction time mean AUC0.10.10.10.40.00.40.1
Median of all reaction times0.10.10.20.20.10.50.2
Reaction time omissions0.50.71.21.11.00.7-0.6
Reaction time false alarm rate0.00.10.10.30.40.1-0.1
Reaction time premature initiation rate1.11.52.8-1.1-1.10.81.7
Reaction time premature initiations0.50.71.5-0.7-0.70.71.2
Std. dev. reaction times0.10.20.20.4-0.30.50.5
Reaction time trials completed0.20.30.50.70.70.1-0.5
Reaction time trials AUC0.30.40.60.80.70.1-0.6
Social response proportion0.20.20.4-0.3-0.30.60.6
Social responses0.20.30.4-0.7-0.50.10.6
Social time0.70.91.20.91.1-0.6-1.1
Conditioned locomotion2.93.54.22.12.0-1.4-1.9
Cocaine response after cond. corrected0.40.51.4-0.4-0.51.20.5
Cocaine response after cond. not corrected1.82.02.4-1.3-1.41.61.4
Cocaine response before conditioning1.01.31.9-1.4-1.4-0.11.1
Saline control response1.31.72.6-0.8-1.21.61.4
Condit. Reinf. active minus inactive responses1.82.23.1-1.5-1.80.81.6
Condit. Reinf. active-inactive response ratio1.41.42.0-1.2-1.40.91.2
Condit. Reinf. active responses1.52.12.7-1.4-1.61.11.6
Condit. Reinf. inactive responses0.00.00.00.20.10.10.0
Condit. Reinf. lever presses2.23.04.2-2.0-2.00.81.8
Condit. Reinf. lever reinforcers received1.82.63.2-1.6-1.81.31.7
Pavlov. Cond. lever latency0.40.60.91.01.0-0.1-0.8
Pavlov. Cond. magazine entry latency0.30.31.2-0.10.1-1.1-0.3
Pavlov. Cond. change in total contacts2.43.44.5-2.1-2.11.11.9
Pavlov. Cond. index score0.30.40.7-0.8-0.6-0.60.3
Pavlov. Cond. latency score0.30.30.6-0.7-0.5-0.70.2
Pavlov. Cond. lever contacts0.81.21.8-1.2-1.30.41.1
Pavlov. Cond. magazine entry number0.30.41.1-0.1-0.41.10.6
Pavlov. Cond. intertrial magazine entries0.30.40.70.60.80.4-0.5
Pavlov. Cond. lever-magazine prob. diff.0.30.40.7-0.8-0.5-0.60.2
Pavlov. Cond. response bias0.20.20.3-0.5-0.5-0.50.3
Conditioned reinforcement - actives0.40.41.41.2-0.0-0.0-0.3
Conditioned reinforcement - inactives0.40.50.90.50.7-0.3-1.0
Conditioned locomotion0.60.72.51.60.4-0.0-0.5
Intermittent access intake day 1-15 change0.20.20.40.30.4-0.1-0.6
Intermittent access intake escalation0.10.10.20.30.3-0.0-0.5
Intermittent access intake escalation 20.20.20.4-0.0-0.40.70.3
Intermitt. access day 1 inactive lever presses0.00.00.00.00.00.1-0.1
Intermitt. access day 15 inactive lever presses0.60.61.00.40.9-0.7-1.0
Intermitt. access escalation Index0.00.00.1-0.40.00.00.1
Intermittent access day 1 total infusions0.00.00.00.1-0.00.0-0.0
Intermittent access day 15 total infusions0.10.10.10.40.20.1-0.4
Intermittent access terminal intake (last 3 days)0.00.00.10.1-0.00.2-0.1
Intermittent access total infusions0.10.10.20.20.3-0.1-0.4
Intermittent access day 1 locomotion0.30.31.21.10.30.1-0.2
Intermittent access day 15 total locomotion0.60.61.71.30.6-0.2-0.6
Intermittent access total locomotion1.01.22.31.51.0-0.6-1.0
Intermittent access standard deviation0.30.30.50.0-0.70.70.6
Cocaine induced anxiety0.40.50.80.70.7-0.4-0.9
Post-drug Anxiety0.30.30.40.60.6-0.2-0.7
Baseline Anxiety0.10.10.30.20.5-0.4-0.4
Lifetime Intake0.10.10.10.40.3-0.1-0.4
Incentive Sensitization - Responses1.21.21.80.71.3-0.7-1.3
Incentive Sensitization - Breakpoint1.11.11.70.71.3-0.7-1.3
Progressive ratio test 1 active lever presses0.10.10.10.3-0.30.20.1
Progressive ratio test 1 breakpoint0.00.00.10.3-0.10.1-0.0
Progressive ratio test 1 inactive lever presses0.30.30.90.90.3-0.2-0.6
Progressive ratio test 2 active lever presses0.60.71.11.10.7-0.5-0.9
Progressive ratio test 2 breakpoint0.40.40.60.80.7-0.4-0.8
Progressive ratio test 2 inactive lever presses1.21.42.01.41.1-0.6-1.4
Total sessions with >9 infusions0.30.30.6-0.80.10.70.1
Short access day 1 total inactive lever presses1.82.03.21.21.5-1.0-1.8
Short access day 10 total inactive lever presses0.10.10.20.40.1-0.1-0.2
Short access day 1 total infusions0.40.50.80.40.8-0.4-0.9
Short access day 10 total infusions0.10.10.1-0.4-0.10.30.0
Short access total infusions0.20.20.30.50.5-0.2-0.6
Short access day 1 locomotion0.10.10.2-0.30.10.4-0.1
Short access day 10 total locomotion0.10.10.10.3-0.30.20.3
Short access total locomotion0.10.10.40.6-0.00.40.1
Compulsive drug intake0.00.00.1-0.10.3-0.2-0.2
One hour access (0.3 mA shock)0.10.10.30.60.10.2-0.1
One hour access (shock baseline)0.10.10.40.6-0.20.20.0
Number of responses in last shaping day0.30.30.8-0.10.6-0.3-0.9
Context. condit. distance diff. score0.00.00.1-0.4-0.1-0.2-0.0
Locomotion velocity, session 10.20.20.50.70.1-0.5-0.2
Locomotion distance, session 10.60.81.7-0.5-1.3-0.40.9
Locomotion velocity, session 20.60.71.80.70.4-1.3-0.6
Locomotion distance, session 20.30.51.30.6-0.2-1.2-0.1
Locomotion velocity, session 30.40.51.4-0.3-0.5-1.20.2
Locomotion distance, session 31.71.85.30.60.8-2.3-1.0
Stereotopy head waving bouts, day 30.30.41.2-0.6-0.31.10.3
Stereotopy head waving duration, day 30.81.02.8-0.6-0.51.70.7
Locomotion velocity, session 70.20.20.4-0.3-0.60.10.6
Locomotion distance, session 70.60.81.21.10.7-0.9-0.7
Stereotopy head waving bouts, day 70.20.20.30.50.4-0.6-0.4
Stereotopy head waving duration, day 70.10.10.2-0.4-0.4-0.10.4
Locomotion velocity, session 80.60.81.8-0.7-0.9-1.30.4
Locomotion distance, session 80.40.61.5-0.2-0.9-1.20.4
Degree of sensitization distance1.81.84.3-0.5-1.02.11.2
Degree of sensitization stereotypy0.10.20.40.40.2-0.6-0.2
Condit. Reinf. active minus inactive responses0.30.31.10.0-0.21.00.4
Condit. Reinf. active-inactive response ratio0.60.61.9-0.3-0.41.40.6
Condit. Reinf. active responses0.10.10.30.50.20.2-0.2
Condit. Reinf. inactive responses0.91.11.71.00.8-1.3-1.1
Incentive salience index mean0.10.10.30.50.20.1-0.2
Condit. Reinf. lever presses1.41.92.51.61.2-1.3-1.4
Time in familiar zone, hab. session 10.70.71.40.71.20.4-0.9
Time in novel zone, hab. session 10.20.20.5-0.3-0.70.30.5
Total zone transitions, hab. session 10.40.51.3-0.5-1.1-0.30.7
Total locomotion distance, hab. session 10.10.20.4-0.4-0.6-0.20.5
Locomotion velocity, hab. session 10.20.30.4-0.5-0.6-0.40.5
Time in familiar zone, hab. session 20.20.20.30.40.5-0.4-0.5
Time in novel zone, hab. session 20.20.20.60.0-0.00.80.2
Total zone transitions, hab. session 20.20.20.6-0.1-0.5-0.70.1
Total locomotion distance, hab. session 20.20.30.4-0.5-0.6-0.50.5
Locomotion velocity, hab. session 20.20.20.5-0.3-0.5-0.70.3
Novel to familiar place preference ratio0.50.50.9-0.2-0.80.61.0
Novelty place preference0.50.50.9-0.2-0.80.71.0
Time in novel zone, NPP test0.80.81.3-0.3-0.91.01.1
Total zone transitions, NPP test1.62.34.8-1.3-2.2-0.21.6
Total locomotion distance, NPP test0.71.01.6-1.1-1.3-0.11.0
Locomotion velocity, NPP test0.71.01.8-1.1-1.3-0.31.1
Pavlov. Cond. lever latency5.26.69.5-2.2-2.33.12.6
Pavlov. Cond. magazine entry latency5.67.28.32.42.7-2.8-2.9
Pavlov. Cond. change in total contacts1.31.41.61.01.3-1.2-1.2
Pavlov. Cond. index score5.77.38.32.52.7-2.9-2.8
Pavlov. Cond. latency score5.97.59.22.42.6-3.0-2.8
Pavlov. Cond. lever contacts3.13.75.81.71.7-2.4-1.9
Pavlov. Cond. magazine entry number6.37.98.9-2.7-2.92.63.0
Pavlov. Cond. intertrial magazine entries0.40.40.6-0.3-0.70.80.8
Pavlov. Cond. lever-magazine prob. diff.4.96.26.92.22.5-2.6-2.6
Pavlov. Cond. response bias5.97.28.42.42.7-2.7-2.9
Bone: apparent density0.00.10.2-0.4-0.2-0.20.2
Bone surface0.10.20.7-0.30.1-0.9-0.3
Bone volume0.10.20.7-0.3-0.0-0.8-0.1
Bone: connectivity density0.20.30.50.40.7-0.3-0.5
Bone: cortical apparent density0.40.50.70.70.7-0.9-0.6
Bone: cortical area0.10.10.2-0.20.3-0.4-0.4
Bone: cortical porosity0.20.20.50.70.40.4-0.1
Bone: cortical porosity0.30.40.80.90.60.5-0.3
Bone: cortical thickness0.30.51.5-1.2-0.5-0.10.4
Bone: cortical thickness0.00.00.00.1-0.10.00.1
Bone: cortical tissue density0.40.60.80.70.7-0.9-0.6
Bone: elastic displacement0.10.10.4-0.6-0.30.10.3
Bone: elastic work0.81.12.5-1.6-1.0-0.30.8
Bone: endosteal estimation0.10.20.5-0.3-0.40.70.5
Bone: endosteal perimeter1.02.12.61.61.5-1.1-1.5
Bone: final force0.91.42.8-1.7-1.20.61.0
Bone: final moment1.21.93.8-2.0-1.40.71.2
Bone: marrow area0.10.30.4-0.4-0.40.70.5
Bone: maximum diameter0.30.60.70.70.8-0.7-0.9
Bone: maximum force0.81.32.6-1.6-1.10.61.0
Bone: maximum moment0.91.63.2-1.8-1.20.71.1
Bone: minimum diameter0.20.40.60.50.7-0.7-0.8
Bone: periosteal estimation0.00.10.2-0.5-0.20.10.2
Bone: periosteal perimeter1.01.71.91.21.4-1.2-1.4
Bone: post-yield work0.00.10.1-0.3-0.20.10.2
Bone: stiffness0.10.20.3-0.5-0.40.40.4
Bone: tissue strength3.83.76.8-2.6-1.81.21.8
Bone: trabecular number0.61.01.50.90.9-1.2-0.9
Bone: trabecular spacing1.41.82.5-1.6-1.21.21.2
Bone: trabecular thickness0.20.20.9-0.3-0.2-0.90.0
Bone: trabecular tissue density0.10.10.3-0.1-0.50.20.5
Breakpoint value in progressive ratio session0.10.10.10.1-0.3-0.40.3
Distance traveled before self-admin0.50.51.5-1.2-0.40.60.1
Distance traveled after self-admin0.30.30.70.80.4-0.4-0.3
Delta time in closed arm before/after self-admin0.10.10.1-0.00.4-0.1-0.3
Delta time in open arm before/after self-admin0.20.20.40.5-0.4-0.20.6
Diff in mean of infusions in LGA sessions0.00.00.1-0.30.10.1-0.0
Extinction: sum of active levers before priming0.20.20.4-0.7-0.40.20.1
Active lever presses in extinction session 60.50.50.7-0.8-0.80.70.5
Delta distance traveled before/after self-admin0.80.92.31.50.8-0.8-0.3
Delta ambulatory time before/after self-admin0.30.30.60.8-0.1-0.00.7
Time in closed arm before self-admin1.82.13.2-1.0-1.81.41.5
Time in closed arm after self-admin0.10.10.3-0.1-0.40.50.2
Time in open arm before self-admin1.01.01.80.61.4-0.6-1.2
Time in open arm after self-admin0.80.92.11.40.5-1.0-0.4
Sum of active levers in priming session hrs 5-60.30.30.5-0.1-0.70.50.6
Time to tail flick, vehicle, before self-admin2.22.22.6-1.5-1.61.51.3
Time to tail flick, vehicle, after self-admin0.30.30.4-0.6-0.60.30.6
Time to tail flick, test, before self-admin0.10.10.10.30.40.1-0.2
Time to tail flick, test, after self-admin0.10.10.4-0.10.2-0.3-0.6
Delta time to tail flick, vehicle, before/after SA0.70.60.90.50.9-1.0-0.7
Delta time to tail flick, test, before/after SA0.20.20.2-0.40.0-0.5-0.5
Ambulatory time before self-admin0.40.51.5-1.2-0.30.3-0.3
Ambulatory time after self-admin0.10.10.50.70.1-0.2-0.1
Total heroin consumption1.01.21.6-1.1-1.10.91.3
Area under the delay curve2.22.43.11.41.5-1.5-1.8
Delay disc. indifference point, 0s delay0.10.10.2-0.5-0.10.1-0.3
Delay disc. indifference point, 16s delay1.11.11.21.01.1-1.0-1.1
Delay disc. indifference point, 2s delay0.30.30.70.50.4-0.4-0.9
Delay disc. indifference point, 24s delay1.31.31.81.31.0-1.0-1.1
Delay disc. indifference point, 4s delay2.22.32.91.41.5-1.5-1.7
Delay disc. indifference point, 8s delay2.12.23.01.21.5-1.4-1.7
Delay discount exponential model param2.62.83.6-1.5-1.61.61.9
Delay discount hyperbolic model param2.62.83.6-1.6-1.61.51.9
Fecal boli incidents, locomotor time 10.60.71.4-1.2-0.70.60.6
Change in fecal boli incidents, locomotor task0.00.00.1-0.2-0.2-0.00.2
Time >=10cm from walls, locomotor time 10.30.30.60.80.6-0.4-0.1
Bouts of movement, locomotor time 10.00.00.1-0.0-0.20.10.3
Total resting periods, locomotor time 10.10.10.1-0.2-0.30.20.3
Rest time, locomotor task time 10.20.20.50.30.4-0.2-0.7
Distance moved, locomotor task time 11.11.21.6-1.2-1.10.71.3
Vertical activity count, locomotor time 10.30.30.8-0.4-0.40.30.9
Time >=10cm from walls, locomotor time 21.61.72.6-1.6-1.20.91.4
Bouts of movement, locomotor time 20.20.30.8-0.9-0.5-0.1-0.0
Total resting periods, locomotor time 20.20.20.5-0.7-0.2-0.4-0.3
Rest time, locomotor task time 20.00.00.1-0.00.0-0.2-0.3
Distance moved, locomotor task time 20.70.81.0-1.0-0.80.91.0
Vertical activity count, locomotor time 20.00.00.00.10.10.20.2
Weight adjusted by age0.40.50.7-0.8-0.60.70.6
Seeking ratio, delayed vs. immediate footshock1.61.83.10.91.5-1.0-1.8
Locomotion in novel chamber0.10.10.30.30.2-0.2-0.5
Locomotion in novel chamber post-restriction0.60.71.3-0.5-1.20.61.0
Progressive ratio3.33.95.1-1.9-2.31.72.0
Food seeking constrained by brief footshock0.40.50.90.30.9-0.3-0.9
Seeking ratio, punishment vs. effort4.25.27.42.02.7-1.7-2.6
Run reversals in cocaine runway, females1.51.52.10.81.5-1.1-1.4
Run reversals in cocaine runway, males0.30.30.70.8-0.30.10.7
Latency to leave start box in cocaine runway0.20.20.40.4-0.40.30.6
Latency to leave start box in cocaine runway, F1.01.11.6-0.6-1.20.91.3
Latency to leave start box in cocaine runway, M0.80.70.91.00.8-0.9-0.7
Cd content in liver3.53.97.0-1.7-1.52.61.8
Co content in liver0.10.10.2-0.5-0.20.20.3
Cu content in liver4.04.85.3-2.3-2.21.92.3
Fe content in liver2.32.74.8-1.4-1.22.21.6
K content in liver0.70.70.9-0.8-0.9-0.80.7
Mg content in liver0.70.72.7-0.0-0.2-1.6-0.1
Mn content in liver0.60.71.0-0.7-1.0-0.70.8
Na content in liver0.20.20.4-0.1-0.40.60.7
Rb content in liver2.53.18.0-1.2-0.82.81.5
Se content in liver0.20.20.9-0.1-0.2-1.0-0.1
Sr content in liver0.40.41.40.2-0.3-1.2-0.1
Zn content in liver4.14.55.8-2.4-2.31.32.3