Adh7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000032959 0.53 0.12 0e+00 0.38 0.36 0.39 0.38 1.0e-43 3.2e-42 1.9e-45 3.0e-44
2 Liver gene expression ENSRNOG00000032959 0.55 0.12 0e+00 0.39 0.38 0.38 0.39 1.9e-45 8.8e-44 5.5e-44 1.8e-45
3 Liver mRNA stability ENSRNOG00000032959 0.15 0.07 0e+00 0.17 0.17 0.18 0.18 1.9e-18 1.2e-18 2.4e-19 1.2e-19

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.34.37.50.7-2.7-2.2
BMI without tail2.04.16.92.3-2.6-0.5
Body weight2.08.414.92.6-3.9-1.9
Epididymis fat weight0.40.91.51.1-1.20.2
Glucose0.81.32.00.2-1.4-1.3
Heart weight0.50.81.21.1-0.9-0.4
Left kidney weight0.92.64.00.6-2.0-1.8
Right kidney weight0.92.75.11.5-2.3-0.9
Tail length0.51.53.21.8-0.90.7
Length with tail0.62.13.01.7-1.7-0.8
Length without tail0.61.33.2-0.3-0.8-1.8
Liver weight, left0.30.51.4-0.10.51.2
Liver weight, right0.10.20.3-0.50.50.3
Parametrial fat weight0.51.01.6-0.91.30.7
Retroperitoneal fat weight0.51.52.71.1-1.6-0.8
Intraocular pressure0.71.02.00.80.61.4
Extensor digitorum longus weight4.417.827.05.2-5.0-0.9
Soleus weight1.03.05.42.3-1.90.4
Tibialis anterior weight5.218.128.24.8-5.3-1.8
Tibia length0.82.33.01.7-1.7-1.0
Number of licking bursts0.10.10.2-0.3-0.4-0.4
Food consumed during 24 hour testing period1.82.23.41.0-1.8-1.5
Times rat made contact with spout1.41.63.9-0.9-0.3-2.0
Mean time between licks in bursts0.30.51.2-1.10.4-0.1
Mean num. licks in bursts0.30.31.0-0.10.1-1.0
Std. dev. time between licks in bursts0.50.61.7-1.30.4-0.2
Water consumed over 24 hours0.60.70.90.6-0.9-0.9
Indifference point 0 sec1.01.62.3-1.51.50.7
Indifference point AUC0.20.20.4-0.1-0.5-0.7
Indifference point function ln k0.10.10.2-0.0-0.50.0
Indifference point function log k0.10.10.2-0.0-0.50.0
Delay discounting total patch changes 0 sec0.81.31.9-1.41.30.5
Delay discounting total patch changes 12 sec0.40.50.8-0.80.1-0.9
Delay discounting total patch changes 18 sec0.40.51.1-1.00.70.0
Delay discounting total patch changes 24 sec0.20.20.40.6-0.10.6
Delay discounting total patch changes 6 sec1.52.35.1-2.30.9-1.1
Delay discounting time to switch 0 sec0.40.61.00.21.00.8
Delay discounting water rate 0 sec0.30.50.8-0.4-0.7-0.9
Delay discounting water rate 12 sec1.42.14.41.2-2.1-0.7
Delay discounting water rate 18 sec1.21.63.1-0.5-1.2-1.8
Delay discounting water rate 24 sec0.60.91.4-0.5-1.2-1.0
Delay discounting water rate 6 sec3.55.19.90.7-3.1-2.2
Locomotor activity0.30.50.8-0.9-0.2-0.9
Locomotor testing distance0.40.71.0-0.2-1.0-1.0
Locomotor testing rearing3.14.99.5-1.9-1.2-3.1
Light reinforcement 10.81.42.40.7-1.5-1.2
Light reinforcement 20.10.10.10.2-0.3-0.4
Reaction time number correct0.40.61.10.2-0.8-1.0
Reaction time mean minus median0.40.60.90.40.80.9
Reaction time mean minus median AUC0.20.30.50.20.70.5
Reaction time num false alarms1.52.13.31.70.21.8
Reaction time num false alarms AUC2.13.05.52.3-0.11.9
Reaction time trials correct on left0.40.61.10.2-0.8-1.0
Reaction time trials on left0.40.51.00.2-0.7-1.0
Reaction time mean0.00.10.20.00.1-0.4
Reaction time mean AUC0.10.10.20.2-0.2-0.5
Median of all reaction times0.30.41.0-0.0-0.5-1.0
Reaction time omissions0.91.22.00.51.41.1
Reaction time false alarm rate1.62.23.91.60.52.0
Reaction time premature initiation rate1.31.83.31.8-1.40.4
Reaction time premature initiations1.92.74.62.1-1.9-0.0
Std. dev. reaction times0.70.91.7-0.01.31.1
Reaction time trials completed0.40.51.00.2-0.7-1.0
Reaction time trials AUC0.40.60.90.2-0.8-1.0
Social response proportion0.40.51.00.30.61.0
Social responses0.50.61.0-0.90.0-1.0
Social time0.91.12.1-0.51.51.0
Conditioned locomotion0.50.50.80.90.30.8
Cocaine response after cond. corrected0.20.20.40.6-0.3-0.4
Cocaine response after cond. not corrected0.20.20.7-0.1-0.2-0.8
Cocaine response before conditioning0.20.20.6-0.7-0.0-0.3
Saline control response1.41.93.11.8-0.31.5
Condit. Reinf. active minus inactive responses0.10.10.10.3-0.4-0.3
Condit. Reinf. active-inactive response ratio0.20.20.4-0.2-0.2-0.6
Condit. Reinf. active responses0.40.50.60.4-0.8-0.8
Condit. Reinf. inactive responses0.40.60.80.8-0.9-0.4
Condit. Reinf. lever presses0.40.51.1-0.2-0.6-1.0
Condit. Reinf. lever reinforcers received0.30.40.60.3-0.7-0.8
Pavlov. Cond. lever latency0.30.40.8-0.50.90.4
Pavlov. Cond. magazine entry latency0.10.10.20.30.30.5
Pavlov. Cond. change in total contacts0.10.10.2-0.2-0.0-0.4
Pavlov. Cond. index score0.00.00.00.20.20.1
Pavlov. Cond. latency score0.10.10.3-0.20.50.2
Pavlov. Cond. lever contacts0.81.12.11.0-1.4-0.6
Pavlov. Cond. magazine entry number0.10.10.1-0.3-0.3-0.3
Pavlov. Cond. intertrial magazine entries0.50.71.6-0.3-0.6-1.3
Pavlov. Cond. lever-magazine prob. diff.0.00.00.00.10.20.1
Pavlov. Cond. response bias1.01.42.01.4-1.4-0.3
Conditioned reinforcement - actives1.51.53.01.20.31.7
Conditioned reinforcement - inactives0.50.51.10.50.51.1
Conditioned locomotion1.82.13.2-0.51.81.7
Intermittent access intake day 1-15 change0.30.30.4-0.70.60.1
Intermittent access intake escalation0.10.10.1-0.30.30.1
Intermittent access intake escalation 20.00.00.1-0.20.2-0.2
Intermitt. access day 1 inactive lever presses0.10.20.3-0.50.1-0.4
Intermitt. access day 15 inactive lever presses1.01.11.81.1-1.3-0.5
Intermitt. access escalation Index0.30.30.70.9-0.40.1
Intermittent access day 1 total infusions1.82.14.11.1-2.0-0.9
Intermittent access day 15 total infusions0.60.61.20.3-1.1-0.8
Intermittent access terminal intake (last 3 days)0.50.51.10.4-1.0-0.5
Intermittent access total infusions1.41.53.00.9-1.7-0.9
Intermittent access day 1 locomotion0.50.51.20.5-1.1-0.4
Intermittent access day 15 total locomotion0.10.10.1-0.30.30.1
Intermittent access total locomotion0.40.40.90.2-0.9-0.6
Intermittent access standard deviation0.00.00.0-0.10.1-0.0
Cocaine induced anxiety0.91.11.8-0.61.31.1
Post-drug Anxiety0.70.71.6-1.30.6-0.5
Baseline Anxiety2.32.45.0-1.2-0.9-2.2
Lifetime Intake1.11.22.31.1-1.5-0.4
Incentive Sensitization - Responses0.40.40.60.60.40.8
Incentive Sensitization - Breakpoint0.20.20.30.60.30.5
Progressive ratio test 1 active lever presses2.52.54.91.5-2.2-0.7
Progressive ratio test 1 breakpoint1.81.83.71.1-1.9-0.7
Progressive ratio test 1 inactive lever presses0.20.20.40.2-0.7-0.4
Progressive ratio test 2 active lever presses1.71.82.91.3-1.7-0.9
Progressive ratio test 2 breakpoint2.22.43.91.3-2.0-1.3
Progressive ratio test 2 inactive lever presses1.11.32.51.6-1.10.0
Total sessions with >9 infusions1.92.03.51.9-1.21.1
Short access day 1 total inactive lever presses0.00.00.1-0.2-0.1-0.3
Short access day 10 total inactive lever presses1.81.93.7-1.41.90.5
Short access day 1 total infusions0.80.92.10.40.71.4
Short access day 10 total infusions0.60.71.50.8-1.2-0.1
Short access total infusions0.60.71.01.0-1.00.4
Short access day 1 locomotion0.70.81.3-0.50.91.1
Short access day 10 total locomotion0.50.61.4-1.20.6-0.0
Short access total locomotion0.30.40.7-0.80.60.2
Compulsive drug intake0.10.10.3-0.30.1-0.6
One hour access (0.3 mA shock)0.20.20.50.1-0.5-0.7
One hour access (shock baseline)0.20.20.30.1-0.5-0.6
Number of responses in last shaping day1.01.02.01.4-0.50.9
Context. condit. distance diff. score0.80.92.0-1.40.8-0.3
Locomotion velocity, session 11.41.52.21.5-1.5-0.0
Locomotion distance, session 10.40.61.20.7-1.1-0.1
Locomotion velocity, session 20.20.30.70.0-0.3-0.8
Locomotion distance, session 20.60.81.21.0-1.10.4
Locomotion velocity, session 31.01.22.21.5-0.80.8
Locomotion distance, session 30.00.00.0-0.20.20.2
Stereotopy head waving bouts, day 31.01.22.21.5-1.10.4
Stereotopy head waving duration, day 31.21.52.51.6-1.3-0.1
Locomotion velocity, session 70.40.40.90.1-0.9-0.5
Locomotion distance, session 70.81.02.6-1.6-0.0-0.7
Stereotopy head waving bouts, day 71.92.24.02.0-0.31.5
Stereotopy head waving duration, day 72.83.46.22.5-0.32.0
Locomotion velocity, session 80.00.00.1-0.2-0.1-0.1
Locomotion distance, session 80.20.20.3-0.4-0.6-0.5
Degree of sensitization distance1.21.22.5-1.60.0-1.1
Degree of sensitization stereotypy1.92.03.92.0-0.21.5
Condit. Reinf. active minus inactive responses0.70.81.80.7-1.3-0.0
Condit. Reinf. active-inactive response ratio1.92.14.81.0-2.2-0.7
Condit. Reinf. active responses0.30.40.40.6-0.60.5
Condit. Reinf. inactive responses0.60.71.30.30.91.1
Incentive salience index mean0.50.61.40.5-1.2-0.2
Condit. Reinf. lever presses0.10.20.30.5-0.20.4
Time in familiar zone, hab. session 10.60.61.10.70.51.0
Time in novel zone, hab. session 10.00.00.0-0.2-0.1-0.1
Total zone transitions, hab. session 11.41.93.61.9-1.11.0
Total locomotion distance, hab. session 10.10.10.20.5-0.00.4
Locomotion velocity, hab. session 10.00.10.10.2-0.3-0.3
Time in familiar zone, hab. session 20.70.81.9-0.2-0.6-1.4
Time in novel zone, hab. session 20.60.61.1-0.20.91.1
Total zone transitions, hab. session 20.50.71.21.1-0.90.2
Total locomotion distance, hab. session 20.40.61.20.0-0.7-1.1
Locomotion velocity, hab. session 20.30.40.8-0.1-0.5-0.9
Novel to familiar place preference ratio0.20.20.5-0.4-0.2-0.7
Novelty place preference0.40.40.9-0.6-0.3-1.0
Time in novel zone, NPP test0.50.51.1-0.6-0.3-1.0
Total zone transitions, NPP test0.91.32.51.1-1.6-0.5
Total locomotion distance, NPP test0.30.51.0-0.3-0.5-1.0
Locomotion velocity, NPP test0.60.91.9-0.4-0.7-1.4
Pavlov. Cond. lever latency1.01.32.50.9-1.6-0.7
Pavlov. Cond. magazine entry latency0.50.71.31.2-0.30.7
Pavlov. Cond. change in total contacts0.30.30.5-0.40.70.6
Pavlov. Cond. index score0.30.30.7-0.40.80.3
Pavlov. Cond. latency score0.50.61.3-0.61.10.4
Pavlov. Cond. lever contacts0.20.30.5-0.50.70.0
Pavlov. Cond. magazine entry number0.50.61.1-1.10.4-0.7
Pavlov. Cond. intertrial magazine entries0.30.30.4-0.50.60.6
Pavlov. Cond. lever-magazine prob. diff.0.20.30.4-0.60.7-0.1
Pavlov. Cond. response bias0.30.40.60.80.10.8
Bone: apparent density0.30.40.6-0.80.7-0.4
Bone surface0.00.00.1-0.10.2-0.2
Bone volume0.00.00.10.40.1-0.1
Bone: connectivity density1.21.93.2-1.81.6-0.2
Bone: cortical apparent density0.10.10.10.2-0.4-0.2
Bone: cortical area1.21.82.91.3-1.7-0.9
Bone: cortical porosity1.01.12.31.5-0.90.4
Bone: cortical porosity1.21.32.41.6-1.20.0
Bone: cortical thickness0.91.52.31.0-1.5-1.1
Bone: cortical thickness1.21.42.40.9-1.5-1.0
Bone: cortical tissue density0.00.10.10.1-0.3-0.3
Bone: elastic displacement0.70.71.21.1-1.0-0.2
Bone: elastic work1.51.93.41.0-1.9-1.2
Bone: endosteal estimation0.10.30.40.6-0.60.1
Bone: endosteal perimeter0.51.01.81.4-0.80.8
Bone: final force0.20.20.60.2-0.8-0.3
Bone: final moment0.20.30.60.2-0.8-0.5
Bone: marrow area0.10.20.30.5-0.50.1
Bone: maximum diameter0.20.40.60.7-0.8-0.4
Bone: maximum force0.10.10.20.3-0.50.1
Bone: maximum moment0.10.10.30.2-0.5-0.2
Bone: minimum diameter2.13.86.12.2-2.5-0.6
Bone: periosteal estimation0.81.62.61.3-1.6-0.6
Bone: periosteal perimeter1.32.24.22.0-1.50.1
Bone: post-yield work0.81.01.6-0.21.31.2
Bone: stiffness0.20.30.60.2-0.8-0.4
Bone: tissue strength0.30.30.6-0.5-0.3-0.8
Bone: trabecular number0.71.11.7-0.11.31.2
Bone: trabecular spacing1.11.42.6-1.2-0.4-1.6
Bone: trabecular thickness0.40.51.01.0-0.30.4
Bone: trabecular tissue density0.20.30.70.8-0.40.2
Breakpoint value in progressive ratio session1.71.93.2-1.8-0.2-1.6
Distance traveled before self-admin0.10.10.20.5-0.30.0
Distance traveled after self-admin0.10.10.2-0.50.2-0.4
Delta time in closed arm before/after self-admin1.51.52.41.4-0.51.5
Delta time in open arm before/after self-admin1.21.22.51.6-0.50.9
Diff in mean of infusions in LGA sessions2.52.85.1-2.30.0-1.8
Extinction: sum of active levers before priming2.32.34.7-0.6-1.3-2.2
Active lever presses in extinction session 61.21.22.6-1.61.0-0.1
Delta distance traveled before/after self-admin0.20.20.5-0.70.3-0.2
Delta ambulatory time before/after self-admin0.30.30.8-0.90.2-0.4
Time in closed arm before self-admin0.50.60.9-0.90.9-0.1
Time in closed arm after self-admin1.11.21.7-1.21.30.7
Time in open arm before self-admin1.81.93.00.1-1.7-1.7
Time in open arm after self-admin2.22.44.32.1-1.70.0
Sum of active levers in priming session hrs 5-63.13.05.0-2.20.3-2.0
Time to tail flick, vehicle, before self-admin0.20.20.30.10.60.5
Time to tail flick, vehicle, after self-admin0.80.91.4-0.11.11.2
Time to tail flick, test, before self-admin1.31.32.6-0.61.60.9
Time to tail flick, test, after self-admin0.10.10.20.1-0.4-0.0
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.20.30.7
Delta time to tail flick, test, before/after SA1.21.12.40.8-1.6-0.2
Ambulatory time before self-admin0.10.10.30.6-0.2-0.1
Ambulatory time after self-admin0.20.20.3-0.20.60.4
Total heroin consumption0.30.30.8-0.90.3-0.4
Area under the delay curve0.10.10.3-0.30.50.3
Delay disc. indifference point, 0s delay1.41.62.4-0.21.61.5
Delay disc. indifference point, 16s delay0.10.10.1-0.30.2-0.0
Delay disc. indifference point, 2s delay1.41.62.40.11.61.5
Delay disc. indifference point, 24s delay0.40.40.8-0.70.90.0
Delay disc. indifference point, 4s delay0.40.40.7-0.80.3-0.7
Delay disc. indifference point, 8s delay0.20.30.40.7-0.30.5
Delay discount exponential model param0.10.10.20.4-0.4-0.1
Delay discount hyperbolic model param0.20.20.40.5-0.7-0.1
Fecal boli incidents, locomotor time 10.20.30.50.50.30.7
Change in fecal boli incidents, locomotor task1.01.02.0-0.3-0.9-1.4
Time >=10cm from walls, locomotor time 12.12.14.2-2.01.0-1.1
Bouts of movement, locomotor time 10.60.71.1-1.00.2-1.1
Total resting periods, locomotor time 10.40.40.6-0.70.1-0.8
Rest time, locomotor task time 10.40.50.70.9-0.00.8
Distance moved, locomotor task time 10.50.61.1-0.6-0.4-1.1
Vertical activity count, locomotor time 10.50.51.2-1.10.3-0.6
Time >=10cm from walls, locomotor time 21.51.62.81.7-1.20.6
Bouts of movement, locomotor time 20.60.71.4-0.61.20.6
Total resting periods, locomotor time 20.70.71.5-0.71.20.5
Rest time, locomotor task time 20.20.20.4-0.50.60.1
Distance moved, locomotor task time 20.20.20.40.5-0.10.6
Vertical activity count, locomotor time 20.10.10.30.2-0.00.5
Weight adjusted by age0.00.00.0-0.2-0.1-0.1
Seeking ratio, delayed vs. immediate footshock1.21.43.1-1.11.7-0.0
Locomotion in novel chamber2.63.25.0-2.22.0-0.6
Locomotion in novel chamber post-restriction0.00.00.10.1-0.1-0.3
Progressive ratio0.50.51.21.1-0.6-0.1
Food seeking constrained by brief footshock0.91.11.80.1-1.1-1.4
Seeking ratio, punishment vs. effort0.50.61.3-1.1-0.0-0.7
Run reversals in cocaine runway, females0.50.50.9-0.7-0.1-0.9
Run reversals in cocaine runway, males1.31.22.2-0.4-1.1-1.5
Latency to leave start box in cocaine runway0.70.81.5-1.20.6-0.7
Latency to leave start box in cocaine runway, F0.10.10.3-0.60.3-0.1
Latency to leave start box in cocaine runway, M3.73.66.7-2.61.7-1.0
Cd content in liver0.20.20.4-0.0-0.4-0.6
Co content in liver1.72.03.11.8-1.7-0.0
Cu content in liver2.63.16.3-2.51.7-0.4
Fe content in liver1.82.14.1-1.32.00.7
K content in liver0.90.91.8-1.31.0-0.2
Mg content in liver0.50.51.2-1.10.5-0.4
Mn content in liver0.91.02.2-0.6-0.6-1.5
Na content in liver0.10.10.20.2-0.1-0.4
Rb content in liver0.20.30.50.6-0.20.7
Se content in liver0.30.40.7-0.80.7-0.1
Sr content in liver0.50.50.80.1-0.9-0.8
Zn content in liver9.09.918.4-4.33.4-0.2