Plcl1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000032659 0.03 0.02 3.5e-04 0.03 0.03 0.02 0.03 1.7e-04 4.4e-04 9.1e-04 3.0e-04
2 Brain mRNA stability ENSRNOG00000032659 0.04 0.03 5.5e-05 0.04 0.04 0.04 0.04 1.6e-04 1.4e-04 2.9e-04 9.7e-05
3 Eye gene expression ENSRNOG00000032659 0.67 0.16 6.1e-05 0.11 0.16 0.11 0.17 8.3e-03 2.0e-03 9.4e-03 1.5e-03
4 PL gene expression ENSRNOG00000032659 0.03 0.02 6.9e-03 0.01 0.01 0 0 1.0e-01 4.0e-02 2.8e-01 1.3e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.65.37.81.2-2.7-2.1-2.8
BMI without tail0.10.10.4-0.3-0.1-0.10.6
Body weight1.25.06.5-2.31.92.12.5
Epididymis fat weight1.12.65.4-1.01.51.32.3
Glucose0.20.40.50.2-0.7-0.70.7
Heart weight0.10.20.3-0.40.30.4-0.5
Left kidney weight0.20.60.8-0.80.80.90.4
Right kidney weight0.61.83.1-1.81.21.50.5
Tail length6.620.035.1-3.04.63.85.9
Length with tail7.728.341.0-4.25.55.06.4
Length without tail0.92.02.4-1.31.41.61.4
Liver weight, left2.13.44.6-1.82.12.01.4
Liver weight, right2.23.64.4-2.11.82.01.6
Parametrial fat weight0.00.00.00.0-0.2-0.00.0
Retroperitoneal fat weight0.10.30.7-0.80.00.40.7
Intraocular pressure2.83.94.41.8-2.1-2.0-2.0
Extensor digitorum longus weight1.04.06.71.6-2.6-2.3-1.2
Soleus weight0.20.50.9-0.90.50.80.3
Tibialis anterior weight0.41.52.51.1-1.6-1.3-0.8
Tibia length3.49.516.3-1.93.32.64.0
Number of licking bursts0.30.31.00.1-0.5-0.3-1.0
Food consumed during 24 hour testing period0.10.10.20.4-0.2-0.30.2
Times rat made contact with spout0.20.20.30.6-0.1-0.50.4
Mean time between licks in bursts0.40.50.90.8-0.6-0.90.2
Mean num. licks in bursts0.20.20.60.40.2-0.20.7
Std. dev. time between licks in bursts2.12.53.01.3-1.7-1.7-1.5
Water consumed over 24 hours0.70.81.20.9-0.8-0.9-1.1
Indifference point 0 sec0.61.03.70.1-0.3-0.1-1.9
Indifference point AUC0.10.10.2-0.20.40.30.3
Indifference point function ln k0.60.82.7-0.1-0.7-0.2-1.6
Indifference point function log k0.60.82.7-0.1-0.7-0.2-1.6
Delay discounting total patch changes 0 sec0.71.14.00.2-0.5-0.3-2.0
Delay discounting total patch changes 12 sec0.40.51.80.2-0.2-0.1-1.3
Delay discounting total patch changes 18 sec1.41.93.21.2-1.2-1.1-1.8
Delay discounting total patch changes 24 sec0.10.10.1-0.30.20.30.0
Delay discounting total patch changes 6 sec0.50.71.3-1.10.50.8-0.7
Delay discounting time to switch 0 sec0.20.31.00.4-0.2-0.41.0
Delay discounting water rate 0 sec0.30.51.0-1.00.50.80.1
Delay discounting water rate 12 sec0.71.11.7-1.30.31.0-1.3
Delay discounting water rate 18 sec0.20.30.5-0.60.50.7-0.3
Delay discounting water rate 24 sec1.21.63.0-1.70.91.21.1
Delay discounting water rate 6 sec0.00.10.2-0.40.00.3-0.2
Locomotor activity0.10.10.40.60.0-0.20.1
Locomotor testing distance0.10.20.50.50.1-0.1-0.7
Locomotor testing rearing0.20.30.3-0.40.50.50.6
Light reinforcement 11.32.44.40.9-2.1-1.5-1.4
Light reinforcement 20.20.20.5-0.60.00.3-0.7
Reaction time number correct0.20.30.7-0.2-0.50.0-0.9
Reaction time mean minus median0.30.41.10.6-0.1-0.51.0
Reaction time mean minus median AUC0.10.20.30.50.0-0.40.6
Reaction time num false alarms1.72.33.61.2-1.9-1.6-1.4
Reaction time num false alarms AUC1.72.43.81.2-2.0-1.6-1.3
Reaction time trials correct on left0.20.30.7-0.2-0.50.0-0.9
Reaction time trials on left0.20.20.6-0.3-0.50.0-0.8
Reaction time mean0.60.82.10.90.4-0.31.5
Reaction time mean AUC0.60.81.71.10.1-0.61.3
Median of all reaction times0.50.71.61.00.4-0.31.3
Reaction time omissions0.20.20.70.30.3-0.10.8
Reaction time false alarm rate1.01.42.01.1-1.4-1.4-0.7
Reaction time premature initiation rate2.73.68.91.4-1.4-1.1-3.0
Reaction time premature initiations2.63.810.01.2-1.6-1.1-3.2
Std. dev. reaction times0.50.72.1-0.00.80.31.4
Reaction time trials completed0.20.20.6-0.3-0.50.0-0.8
Reaction time trials AUC0.20.20.6-0.2-0.6-0.1-0.8
Social response proportion3.94.35.3-2.02.32.21.7
Social responses1.21.52.4-1.11.11.11.6
Social time0.20.20.70.00.40.10.8
Conditioned locomotion0.80.91.3-0.91.11.00.8
Cocaine response after cond. corrected1.11.32.4-0.91.61.4-0.1
Cocaine response after cond. not corrected2.12.44.1-1.42.01.80.4
Cocaine response before conditioning0.00.10.1-0.3-0.00.10.3
Saline control response0.20.20.6-0.80.00.20.5
Condit. Reinf. active minus inactive responses1.01.22.4-0.61.61.40.3
Condit. Reinf. active-inactive response ratio0.20.20.60.50.30.2-0.8
Condit. Reinf. active responses0.40.61.3-0.21.20.9-0.2
Condit. Reinf. inactive responses0.10.10.3-0.20.50.4-0.0
Condit. Reinf. lever presses1.11.53.91.1-0.7-0.6-2.0
Condit. Reinf. lever reinforcers received0.40.51.2-0.11.10.9-0.5
Pavlov. Cond. lever latency1.52.13.7-1.70.91.11.9
Pavlov. Cond. magazine entry latency0.30.30.40.7-0.6-0.5-0.4
Pavlov. Cond. change in total contacts1.21.63.91.4-0.5-0.7-2.0
Pavlov. Cond. index score1.21.62.71.5-0.8-0.9-1.6
Pavlov. Cond. latency score1.11.32.11.4-0.8-0.9-1.4
Pavlov. Cond. lever contacts1.21.73.91.4-0.6-0.7-2.0
Pavlov. Cond. magazine entry number0.10.10.2-0.50.10.10.3
Pavlov. Cond. intertrial magazine entries0.10.10.3-0.50.30.3-0.2
Pavlov. Cond. lever-magazine prob. diff.1.21.62.71.5-0.8-0.9-1.6
Pavlov. Cond. response bias0.50.71.61.1-0.2-0.4-1.3
Conditioned reinforcement - actives0.20.20.5-0.3-0.0-0.10.7
Conditioned reinforcement - inactives0.10.10.20.5-0.0-0.40.3
Conditioned locomotion0.20.30.4-0.2-0.7-0.4-0.6
Intermittent access intake day 1-15 change0.10.10.3-0.3-0.5-0.3-0.1
Intermittent access intake escalation0.10.10.3-0.2-0.5-0.4-0.1
Intermittent access intake escalation 20.60.61.5-1.20.50.70.5
Intermitt. access day 1 inactive lever presses1.01.12.10.8-1.5-1.3-0.4
Intermitt. access day 15 inactive lever presses0.10.10.2-0.1-0.5-0.1-0.1
Intermitt. access escalation Index0.50.41.10.60.0-0.31.1
Intermittent access day 1 total infusions0.20.20.40.5-0.1-0.30.6
Intermittent access day 15 total infusions0.20.20.30.3-0.4-0.60.5
Intermittent access terminal intake (last 3 days)0.20.20.40.4-0.5-0.60.1
Intermittent access total infusions0.20.20.40.5-0.3-0.50.6
Intermittent access day 1 locomotion0.80.91.31.1-0.9-1.2-0.4
Intermittent access day 15 total locomotion0.10.10.10.3-0.2-0.30.2
Intermittent access total locomotion0.20.30.50.5-0.6-0.70.2
Intermittent access standard deviation0.70.71.10.7-1.0-1.1-0.3
Cocaine induced anxiety0.00.00.0-0.2-0.10.0-0.1
Post-drug Anxiety0.10.10.2-0.40.20.3-0.3
Baseline Anxiety0.00.00.10.10.40.2-0.0
Lifetime Intake0.30.30.40.5-0.4-0.70.5
Incentive Sensitization - Responses0.30.30.90.20.30.11.0
Incentive Sensitization - Breakpoint0.20.20.90.10.30.10.9
Progressive ratio test 1 active lever presses1.11.12.21.5-0.7-1.30.4
Progressive ratio test 1 breakpoint0.80.91.71.3-0.5-1.20.3
Progressive ratio test 1 inactive lever presses3.74.06.62.1-2.2-2.60.4
Progressive ratio test 2 active lever presses0.60.60.80.9-0.4-0.80.8
Progressive ratio test 2 breakpoint0.91.01.91.4-0.8-1.20.2
Progressive ratio test 2 inactive lever presses0.91.11.51.1-1.2-1.20.1
Total sessions with >9 infusions2.02.23.61.7-1.5-1.9-0.4
Short access day 1 total inactive lever presses0.10.10.40.1-0.2-0.3-0.7
Short access day 10 total inactive lever presses0.00.00.1-0.0-0.3-0.1-0.1
Short access day 1 total infusions0.80.91.71.3-0.6-1.2-0.2
Short access day 10 total infusions0.10.10.1-0.30.10.00.4
Short access total infusions0.60.71.10.9-0.8-1.0-0.2
Short access day 1 locomotion1.41.52.91.7-1.0-1.5-0.1
Short access day 10 total locomotion0.20.20.6-0.0-0.3-0.2-0.8
Short access total locomotion0.10.10.4-0.2-0.1-0.10.7
Compulsive drug intake0.20.20.40.7-0.2-0.4-0.4
One hour access (0.3 mA shock)0.50.61.41.2-0.6-0.8-0.3
One hour access (shock baseline)0.00.10.2-0.10.10.10.4
Number of responses in last shaping day1.01.01.70.9-1.3-1.20.4
Context. condit. distance diff. score0.60.71.80.5-1.3-0.9-0.3
Locomotion velocity, session 10.70.71.00.9-0.7-0.8-1.0
Locomotion distance, session 10.00.00.00.1-0.1-0.2-0.2
Locomotion velocity, session 20.30.30.70.6-0.2-0.5-0.8
Locomotion distance, session 20.00.10.1-0.40.20.1-0.0
Locomotion velocity, session 30.20.20.8-0.30.10.20.9
Locomotion distance, session 30.00.00.10.2-0.2-0.20.1
Stereotopy head waving bouts, day 31.21.42.11.3-1.3-1.4-0.5
Stereotopy head waving duration, day 30.10.10.3-0.1-0.3-0.30.5
Locomotion velocity, session 70.20.30.60.4-0.5-0.2-0.8
Locomotion distance, session 70.10.10.10.4-0.3-0.2-0.4
Stereotopy head waving bouts, day 70.91.01.5-1.21.11.00.6
Stereotopy head waving duration, day 70.91.11.9-1.41.00.90.8
Locomotion velocity, session 80.20.30.9-0.40.20.3-0.9
Locomotion distance, session 80.30.50.90.4-1.0-0.8-0.4
Degree of sensitization distance0.10.10.2-0.10.20.3-0.4
Degree of sensitization stereotypy2.02.23.7-1.91.51.60.5
Condit. Reinf. active minus inactive responses0.10.20.50.30.2-0.0-0.7
Condit. Reinf. active-inactive response ratio0.10.10.3-0.00.20.1-0.5
Condit. Reinf. active responses0.20.20.6-0.10.80.5-0.4
Condit. Reinf. inactive responses0.00.10.20.00.40.2-0.2
Incentive salience index mean0.20.30.80.20.40.2-0.9
Condit. Reinf. lever presses0.10.10.10.10.40.2-0.3
Time in familiar zone, hab. session 10.30.30.7-0.60.20.20.8
Time in novel zone, hab. session 10.20.20.60.6-0.1-0.1-0.8
Total zone transitions, hab. session 10.10.20.2-0.30.50.3-0.5
Total locomotion distance, hab. session 10.20.20.4-0.30.60.4-0.6
Locomotion velocity, hab. session 10.10.20.4-0.30.70.40.0
Time in familiar zone, hab. session 21.41.41.71.2-1.2-1.1-1.3
Time in novel zone, hab. session 20.50.50.6-0.70.60.60.8
Total zone transitions, hab. session 20.20.20.6-0.30.40.10.8
Total locomotion distance, hab. session 20.40.51.1-0.50.70.41.0
Locomotion velocity, hab. session 20.50.71.7-0.60.80.51.3
Novel to familiar place preference ratio1.31.31.6-1.11.31.21.0
Novelty place preference1.31.41.6-1.11.31.31.1
Time in novel zone, NPP test1.11.21.5-1.11.21.20.9
Total zone transitions, NPP test0.10.10.20.4-0.3-0.4-0.4
Total locomotion distance, NPP test0.20.20.60.3-0.4-0.3-0.8
Locomotion velocity, NPP test0.20.30.50.6-0.5-0.5-0.7
Pavlov. Cond. lever latency0.20.30.40.4-0.6-0.60.5
Pavlov. Cond. magazine entry latency0.20.20.80.20.30.1-0.9
Pavlov. Cond. change in total contacts0.50.52.10.10.10.2-1.4
Pavlov. Cond. index score0.10.20.60.20.20.1-0.7
Pavlov. Cond. latency score0.20.20.3-0.20.60.5-0.6
Pavlov. Cond. lever contacts0.10.10.40.10.30.2-0.6
Pavlov. Cond. magazine entry number0.10.20.30.1-0.5-0.40.5
Pavlov. Cond. intertrial magazine entries1.11.31.8-1.20.91.11.3
Pavlov. Cond. lever-magazine prob. diff.0.30.41.00.6-0.0-0.2-1.0
Pavlov. Cond. response bias0.10.10.30.30.2-0.1-0.6
Bone: apparent density5.08.210.5-2.63.23.02.5
Bone surface4.78.310.1-2.63.23.02.6
Bone volume4.57.510.5-2.33.22.92.4
Bone: connectivity density3.65.66.6-2.52.52.61.8
Bone: cortical apparent density7.69.811.12.9-3.3-3.2-3.1
Bone: cortical area0.10.10.30.50.1-0.20.1
Bone: cortical porosity1.82.04.2-0.41.70.92.0
Bone: cortical porosity2.93.25.6-0.82.11.42.4
Bone: cortical thickness2.03.34.02.0-1.7-2.0-1.6
Bone: cortical thickness1.51.73.81.1-1.0-1.0-1.9
Bone: cortical tissue density7.29.410.82.8-3.3-3.1-3.1
Bone: elastic displacement0.30.31.20.0-0.3-0.2-1.1
Bone: elastic work0.40.50.8-0.60.90.90.4
Bone: endosteal estimation2.65.67.3-1.82.72.52.4
Bone: endosteal perimeter2.95.97.0-2.02.62.62.4
Bone: final force0.50.82.6-0.10.70.41.6
Bone: final moment0.40.62.10.10.50.21.4
Bone: marrow area2.45.26.7-1.72.62.52.3
Bone: maximum diameter0.10.20.50.20.70.40.5
Bone: maximum force1.42.44.4-1.01.61.32.1
Bone: maximum moment1.01.83.6-0.81.31.11.9
Bone: minimum diameter0.10.20.30.20.60.30.5
Bone: periosteal estimation1.02.13.3-0.71.81.41.6
Bone: periosteal perimeter0.91.52.1-0.81.51.31.2
Bone: post-yield work1.11.42.6-1.01.11.01.6
Bone: stiffness2.74.38.0-1.52.01.72.8
Bone: tissue strength1.41.33.8-0.80.70.62.0
Bone: trabecular number4.57.08.0-2.62.82.72.4
Bone: trabecular spacing0.60.70.80.9-0.9-0.8-0.8
Bone: trabecular thickness1.41.72.8-1.21.71.50.8
Bone: trabecular tissue density2.53.56.92.6-1.4-2.2-0.5
Breakpoint value in progressive ratio session0.20.20.30.5-0.6-0.2-0.3
Distance traveled before self-admin2.12.23.0-1.51.71.61.0
Distance traveled after self-admin0.20.20.5-0.5-0.30.0-0.7
Delta time in closed arm before/after self-admin0.60.60.80.9-0.8-0.90.2
Delta time in open arm before/after self-admin4.54.37.5-1.72.72.31.2
Diff in mean of infusions in LGA sessions0.60.61.2-0.90.71.10.0
Extinction: sum of active levers before priming1.41.52.3-1.51.01.31.0
Active lever presses in extinction session 60.10.10.10.20.30.4-0.1
Delta distance traveled before/after self-admin1.01.01.50.7-1.2-1.0-1.1
Delta ambulatory time before/after self-admin1.31.41.61.1-1.3-1.3-1.1
Time in closed arm before self-admin2.32.65.5-0.92.31.41.4
Time in closed arm after self-admin0.40.51.0-0.51.00.80.1
Time in open arm before self-admin4.54.88.71.8-2.9-2.4-1.2
Time in open arm after self-admin0.20.20.4-0.20.60.50.5
Sum of active levers in priming session hrs 5-60.80.81.2-0.90.81.10.6
Time to tail flick, vehicle, before self-admin0.20.20.30.5-0.4-0.40.1
Time to tail flick, vehicle, after self-admin0.10.10.30.40.6-0.10.3
Time to tail flick, test, before self-admin0.80.81.40.9-0.6-0.8-1.2
Time to tail flick, test, after self-admin0.60.60.90.7-0.9-1.00.0
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.10.20.00.1
Delta time to tail flick, test, before/after SA0.50.50.80.7-0.9-0.80.1
Ambulatory time before self-admin2.22.43.6-1.91.41.70.9
Ambulatory time after self-admin0.50.51.5-0.4-0.6-0.2-1.2
Total heroin consumption0.00.00.0-0.2-0.10.20.2
Area under the delay curve0.10.10.2-0.3-0.10.3-0.5
Delay disc. indifference point, 0s delay0.60.61.2-0.2-1.1-0.3-1.1
Delay disc. indifference point, 16s delay0.00.00.2-0.10.10.1-0.4
Delay disc. indifference point, 2s delay0.70.82.1-0.7-0.60.4-1.5
Delay disc. indifference point, 24s delay0.30.30.40.5-0.6-0.6-0.3
Delay disc. indifference point, 4s delay0.30.30.8-0.1-0.6-0.2-0.9
Delay disc. indifference point, 8s delay0.60.60.9-0.80.70.90.6
Delay discount exponential model param0.10.10.20.30.0-0.30.5
Delay discount hyperbolic model param0.10.20.40.30.2-0.30.6
Fecal boli incidents, locomotor time 12.12.33.6-1.31.91.80.7
Change in fecal boli incidents, locomotor task0.20.20.30.4-0.5-0.4-0.3
Time >=10cm from walls, locomotor time 10.60.61.1-0.20.80.7-1.1
Bouts of movement, locomotor time 10.50.51.51.2-0.0-0.4-0.7
Total resting periods, locomotor time 11.61.83.61.9-0.7-1.0-1.5
Rest time, locomotor task time 12.42.75.62.4-1.0-1.8-1.0
Distance moved, locomotor task time 11.92.14.3-2.11.11.60.4
Vertical activity count, locomotor time 10.70.71.8-1.30.20.70.6
Time >=10cm from walls, locomotor time 21.21.32.1-1.11.31.4-0.5
Bouts of movement, locomotor time 20.50.51.9-0.1-0.10.2-1.4
Total resting periods, locomotor time 20.70.72.50.4-0.3-0.1-1.6
Rest time, locomotor task time 21.82.14.82.2-0.9-1.6-0.4
Distance moved, locomotor task time 21.51.83.5-1.91.01.60.1
Vertical activity count, locomotor time 20.70.72.1-1.40.10.9-0.1
Weight adjusted by age0.80.91.5-0.91.21.00.4
Seeking ratio, delayed vs. immediate footshock3.03.54.6-2.11.92.11.3
Locomotion in novel chamber1.51.82.61.2-1.6-1.2-1.4
Locomotion in novel chamber post-restriction1.61.92.31.5-1.4-1.5-1.0
Progressive ratio0.91.11.71.3-0.9-1.3-0.4
Food seeking constrained by brief footshock0.40.40.8-0.90.40.60.7
Seeking ratio, punishment vs. effort2.53.04.8-2.21.41.91.3
Run reversals in cocaine runway, females0.10.10.3-0.20.20.10.6
Run reversals in cocaine runway, males0.80.82.00.9-0.3-0.4-1.4
Latency to leave start box in cocaine runway4.34.76.61.7-2.6-2.2-2.1
Latency to leave start box in cocaine runway, F3.43.75.91.5-2.4-2.0-1.6
Latency to leave start box in cocaine runway, M0.90.91.50.8-0.7-0.9-1.2
Cd content in liver0.40.51.8-0.20.30.11.3
Co content in liver1.01.11.61.2-1.1-1.3-0.4
Cu content in liver0.00.00.00.00.20.1-0.2
Fe content in liver0.91.11.7-0.81.31.11.0
K content in liver0.10.10.2-0.40.20.3-0.0
Mg content in liver0.91.01.8-1.40.81.10.5
Mn content in liver1.71.92.31.3-1.5-1.4-1.3
Na content in liver0.50.51.0-0.61.00.90.1
Rb content in liver1.62.03.1-1.71.51.80.2
Se content in liver0.00.00.10.1-0.2-0.2-0.3
Sr content in liver1.51.42.21.5-0.9-1.50.7
Zn content in liver0.00.00.10.2-0.1-0.20.3