Dazap1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver isoform ratio ENSRNOT00000101444 0.02 0.02 5.2e-03 0.01 0.01 0.01 0.01 7.3e-03 2.6e-02 1.4e-02 2.0e-02
2 Liver intron excision ratio chr7:9534236:9534487 0.06 0.04 3.6e-07 0.05 0.05 0.05 0.05 2.2e-06 1.3e-06 1.5e-06 1.8e-06
3 Liver intron excision ratio chr7:9535742:9535944 0.05 0.03 8.5e-06 0.03 0.04 0.04 0.04 1.9e-04 3.6e-05 4.5e-05 6.1e-05
4 NAcc intron excision ratio chr7:9536969:9538743 0.03 0.02 9.2e-03 0.02 0.01 0.02 0.01 1.7e-02 3.2e-02 2.0e-02 3.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail7.122.823.9-4.8-4.94.94.5
BMI without tail2.96.17.1-2.7-2.62.61.9
Body weight1.35.45.9-2.3-2.42.42.1
Epididymis fat weight0.20.40.60.10.8-0.8-0.7
Glucose1.62.42.7-1.5-1.61.61.4
Heart weight0.20.20.70.20.4-0.4-0.8
Left kidney weight0.00.10.30.60.3-0.3-0.0
Right kidney weight1.44.04.22.12.0-2.0-2.0
Tail length2.98.810.22.73.0-3.0-3.2
Length with tail2.07.48.32.92.7-2.7-2.5
Length without tail0.20.40.90.90.6-0.6-0.0
Liver weight, left2.64.35.5-2.3-2.02.01.9
Liver weight, right1.72.83.2-1.8-1.51.51.8
Parametrial fat weight0.30.61.00.70.7-0.7-1.0
Retroperitoneal fat weight0.31.01.4-1.2-0.90.91.0
Intraocular pressure0.20.30.5-0.7-0.40.4-0.5
Extensor digitorum longus weight5.221.022.5-4.7-4.74.74.1
Soleus weight9.427.529.5-4.9-5.45.45.2
Tibialis anterior weight1.24.34.4-2.0-2.12.12.1
Tibia length0.92.42.91.51.5-1.5-1.7
Number of licking bursts0.20.20.4-0.6-0.50.5-0.2
Food consumed during 24 hour testing period0.60.81.0-0.8-1.01.00.7
Times rat made contact with spout0.40.40.6-0.8-0.70.70.3
Mean time between licks in bursts3.95.56.52.12.4-2.3-2.6
Mean num. licks in bursts0.00.00.10.0-0.10.00.3
Std. dev. time between licks in bursts0.91.12.01.40.9-0.9-0.8
Water consumed over 24 hours0.50.61.0-0.3-0.80.81.0
Indifference point 0 sec0.10.10.2-0.2-0.40.40.5
Indifference point AUC0.70.91.20.70.9-0.9-1.1
Indifference point function ln k0.30.40.5-0.4-0.70.70.6
Indifference point function log k0.30.40.5-0.4-0.70.70.6
Delay discounting total patch changes 0 sec0.10.10.2-0.2-0.40.40.3
Delay discounting total patch changes 12 sec0.50.71.3-1.1-0.80.80.4
Delay discounting total patch changes 18 sec1.11.51.71.11.2-1.2-1.3
Delay discounting total patch changes 24 sec0.10.10.10.30.3-0.3-0.4
Delay discounting total patch changes 6 sec0.20.40.40.70.6-0.6-0.6
Delay discounting time to switch 0 sec0.71.12.9-0.8-0.70.71.7
Delay discounting water rate 0 sec0.20.30.4-0.6-0.60.6-0.4
Delay discounting water rate 12 sec1.72.63.3-1.8-1.81.80.8
Delay discounting water rate 18 sec0.40.60.9-1.0-0.60.6-0.8
Delay discounting water rate 24 sec1.21.73.0-1.7-1.31.4-0.0
Delay discounting water rate 6 sec0.20.31.0-0.2-0.00.1-1.0
Locomotor activity3.96.28.52.92.5-2.5-2.1
Locomotor testing distance2.33.84.92.21.9-1.9-1.7
Locomotor testing rearing0.00.00.1-0.0-0.10.1-0.4
Light reinforcement 16.712.313.73.43.7-3.7-3.2
Light reinforcement 22.53.23.71.81.9-1.9-1.6
Reaction time number correct0.91.31.7-1.3-1.31.30.5
Reaction time mean minus median0.50.60.90.80.7-0.7-0.9
Reaction time mean minus median AUC0.10.10.30.50.1-0.10.3
Reaction time num false alarms0.20.30.6-0.4-0.70.70.1
Reaction time num false alarms AUC0.40.50.8-0.7-0.90.90.1
Reaction time trials correct on left0.91.31.7-1.3-1.31.30.5
Reaction time trials on left0.91.31.7-1.3-1.31.30.6
Reaction time mean0.00.00.10.3-0.10.10.2
Reaction time mean AUC0.00.10.10.2-0.20.20.3
Median of all reaction times0.20.30.5-0.2-0.50.50.7
Reaction time omissions0.30.40.50.70.6-0.6-0.5
Reaction time false alarm rate0.00.00.1-0.0-0.30.30.1
Reaction time premature initiation rate0.81.11.90.81.0-1.0-1.4
Reaction time premature initiations0.30.41.40.20.4-0.4-1.2
Std. dev. reaction times0.10.20.30.60.3-0.3-0.4
Reaction time trials completed0.91.31.7-1.3-1.31.30.6
Reaction time trials AUC0.91.31.8-1.4-1.31.30.5
Social response proportion0.91.01.21.01.1-1.1-0.7
Social responses7.59.711.13.33.1-3.2-2.8
Social time0.50.70.9-1.0-0.70.70.8
Conditioned locomotion2.02.43.3-1.8-1.61.61.0
Cocaine response after cond. corrected6.87.68.9-2.9-2.93.02.1
Cocaine response after cond. not corrected7.17.99.2-3.0-3.03.02.1
Cocaine response before conditioning0.60.70.90.90.9-0.9-0.7
Saline control response0.10.10.2-0.4-0.30.30.1
Condit. Reinf. active minus inactive responses1.72.13.71.31.3-1.3-1.9
Condit. Reinf. active-inactive response ratio0.10.20.4-0.4-0.20.2-0.6
Condit. Reinf. active responses1.82.53.41.71.4-1.4-1.8
Condit. Reinf. inactive responses1.11.42.21.51.1-1.1-1.1
Condit. Reinf. lever presses1.92.63.81.41.5-1.5-2.0
Condit. Reinf. lever reinforcers received1.21.72.81.31.1-1.1-1.7
Pavlov. Cond. lever latency0.70.91.4-1.2-0.80.71.1
Pavlov. Cond. magazine entry latency0.40.50.70.80.7-0.7-0.7
Pavlov. Cond. change in total contacts0.60.81.21.00.7-0.7-1.1
Pavlov. Cond. index score0.70.91.31.10.8-0.8-1.1
Pavlov. Cond. latency score0.70.91.41.20.8-0.8-1.0
Pavlov. Cond. lever contacts0.50.71.20.90.7-0.7-1.1
Pavlov. Cond. magazine entry number0.70.91.2-1.1-0.90.90.9
Pavlov. Cond. intertrial magazine entries0.40.60.8-0.9-0.80.80.4
Pavlov. Cond. lever-magazine prob. diff.0.81.01.41.20.9-0.8-1.1
Pavlov. Cond. response bias1.42.02.81.41.2-1.2-1.7
Conditioned reinforcement - actives2.42.32.61.51.5-1.5-1.6
Conditioned reinforcement - inactives0.60.71.1-1.0-0.80.80.6
Conditioned locomotion7.18.68.92.83.0-3.0-3.0
Intermittent access intake day 1-15 change6.56.57.62.42.5-2.5-2.8
Intermittent access intake escalation5.45.48.11.92.2-2.2-2.8
Intermittent access intake escalation 26.76.69.72.12.5-2.5-3.1
Intermitt. access day 1 inactive lever presses0.10.10.40.00.1-0.0-0.6
Intermitt. access day 15 inactive lever presses0.40.40.60.50.7-0.7-0.8
Intermitt. access escalation Index0.10.10.30.3-0.20.20.5
Intermittent access day 1 total infusions0.00.00.1-0.1-0.20.20.3
Intermittent access day 15 total infusions1.71.92.61.21.4-1.3-1.6
Intermittent access terminal intake (last 3 days)1.01.11.41.01.0-1.0-1.2
Intermittent access total infusions0.20.20.30.30.4-0.4-0.5
Intermittent access day 1 locomotion0.30.40.40.50.6-0.6-0.6
Intermittent access day 15 total locomotion3.53.74.11.62.0-2.0-2.0
Intermittent access total locomotion1.01.11.21.01.1-1.1-1.0
Intermittent access standard deviation2.22.33.21.31.5-1.5-1.8
Cocaine induced anxiety0.91.01.41.21.0-1.0-0.6
Post-drug Anxiety0.70.81.11.01.0-1.0-0.3
Baseline Anxiety0.00.00.1-0.10.2-0.2-0.3
Lifetime Intake0.10.10.10.20.3-0.3-0.3
Incentive Sensitization - Responses0.10.10.3-0.00.1-0.1-0.5
Incentive Sensitization - Breakpoint0.10.10.30.10.2-0.2-0.6
Progressive ratio test 1 active lever presses0.10.10.2-0.5-0.30.30.2
Progressive ratio test 1 breakpoint0.20.20.3-0.6-0.40.40.3
Progressive ratio test 1 inactive lever presses0.00.00.00.10.2-0.2-0.1
Progressive ratio test 2 active lever presses0.10.10.20.00.2-0.2-0.5
Progressive ratio test 2 breakpoint0.10.20.20.30.4-0.4-0.5
Progressive ratio test 2 inactive lever presses0.00.00.10.20.3-0.3-0.1
Total sessions with >9 infusions0.00.00.10.2-0.10.10.1
Short access day 1 total inactive lever presses0.10.10.10.10.4-0.4-0.3
Short access day 10 total inactive lever presses0.00.00.1-0.2-0.10.1-0.3
Short access day 1 total infusions0.30.30.50.70.6-0.7-0.2
Short access day 10 total infusions0.00.00.0-0.10.1-0.1-0.1
Short access total infusions0.00.00.00.10.0-0.00.1
Short access day 1 locomotion1.31.31.81.41.2-1.2-0.9
Short access day 10 total locomotion3.74.05.31.91.9-1.9-2.3
Short access total locomotion1.01.01.21.10.9-0.9-1.0
Compulsive drug intake1.11.11.5-0.8-1.11.01.2
One hour access (0.3 mA shock)0.20.20.3-0.5-0.40.40.5
One hour access (shock baseline)0.00.00.1-0.00.1-0.1-0.3
Number of responses in last shaping day0.10.10.20.40.3-0.3-0.3
Context. condit. distance diff. score0.30.30.4-0.6-0.50.50.6
Locomotion velocity, session 10.80.91.31.21.0-1.0-0.4
Locomotion distance, session 10.50.71.10.91.0-1.00.2
Locomotion velocity, session 25.05.97.52.52.7-2.7-1.5
Locomotion distance, session 22.33.34.22.02.0-2.1-0.9
Locomotion velocity, session 36.17.17.62.52.8-2.7-2.7
Locomotion distance, session 30.00.00.0-0.1-0.10.1-0.0
Stereotopy head waving bouts, day 35.66.77.82.52.8-2.8-2.2
Stereotopy head waving duration, day 36.37.68.62.62.9-2.9-2.5
Locomotion velocity, session 70.60.71.21.10.7-0.7-0.8
Locomotion distance, session 70.30.30.5-0.6-0.70.70.1
Stereotopy head waving bouts, day 70.20.20.30.50.4-0.40.3
Stereotopy head waving duration, day 70.50.61.01.00.8-0.8-0.1
Locomotion velocity, session 81.11.32.01.41.2-1.3-0.3
Locomotion distance, session 80.30.40.60.50.8-0.8-0.2
Degree of sensitization distance0.40.40.4-0.5-0.70.70.6
Degree of sensitization stereotypy1.51.62.7-0.9-1.21.21.6
Condit. Reinf. active minus inactive responses4.65.15.82.12.4-2.4-2.1
Condit. Reinf. active-inactive response ratio1.92.02.71.21.4-1.4-1.6
Condit. Reinf. active responses4.55.56.62.32.6-2.6-1.9
Condit. Reinf. inactive responses1.41.62.11.41.4-1.5-0.6
Incentive salience index mean2.83.44.21.82.0-2.1-1.4
Condit. Reinf. lever presses0.30.40.60.80.6-0.70.4
Time in familiar zone, hab. session 12.01.92.41.21.4-1.4-1.6
Time in novel zone, hab. session 10.80.81.4-0.4-0.90.91.2
Total zone transitions, hab. session 11.42.02.51.61.5-1.6-0.7
Total locomotion distance, hab. session 11.92.74.02.01.8-1.8-0.6
Locomotion velocity, hab. session 12.33.34.22.02.0-2.1-1.0
Time in familiar zone, hab. session 25.65.97.62.02.4-2.4-2.8
Time in novel zone, hab. session 24.24.25.7-1.6-2.12.12.4
Total zone transitions, hab. session 20.20.20.70.30.3-0.40.8
Total locomotion distance, hab. session 21.52.02.91.41.7-1.7-0.7
Locomotion velocity, hab. session 21.62.23.11.51.7-1.8-0.6
Novel to familiar place preference ratio3.43.65.5-1.4-1.91.92.3
Novelty place preference2.02.13.4-1.0-1.41.41.9
Time in novel zone, NPP test2.32.53.9-1.1-1.61.52.0
Total zone transitions, NPP test0.10.20.30.30.5-0.50.3
Total locomotion distance, NPP test0.10.20.20.30.4-0.40.5
Locomotion velocity, NPP test0.20.30.50.60.7-0.70.2
Pavlov. Cond. lever latency0.10.10.2-0.4-0.40.4-0.4
Pavlov. Cond. magazine entry latency3.24.14.81.72.2-2.2-2.0
Pavlov. Cond. change in total contacts0.10.10.20.30.5-0.5-0.2
Pavlov. Cond. index score0.70.91.30.91.1-1.1-0.5
Pavlov. Cond. latency score0.81.01.41.11.2-1.2-0.4
Pavlov. Cond. lever contacts0.30.30.50.70.6-0.60.2
Pavlov. Cond. magazine entry number0.91.11.4-0.8-1.21.20.9
Pavlov. Cond. intertrial magazine entries0.10.10.3-0.10.1-0.1-0.6
Pavlov. Cond. lever-magazine prob. diff.1.11.41.91.11.4-1.4-0.8
Pavlov. Cond. response bias1.31.62.01.11.4-1.4-1.1
Bone: apparent density0.30.41.11.10.3-0.40.6
Bone surface1.01.84.42.11.1-1.20.3
Bone volume1.01.74.52.11.0-1.10.3
Bone: connectivity density0.20.30.90.4-0.10.11.0
Bone: cortical apparent density0.81.11.3-1.0-1.11.11.0
Bone: cortical area0.40.61.3-0.1-0.80.81.1
Bone: cortical porosity0.70.81.21.10.9-0.9-0.6
Bone: cortical porosity0.20.20.60.70.4-0.40.1
Bone: cortical thickness1.01.62.1-0.9-1.31.31.5
Bone: cortical thickness0.10.10.2-0.4-0.40.4-0.3
Bone: cortical tissue density0.60.80.9-0.8-0.90.90.8
Bone: elastic displacement0.20.30.40.70.5-0.5-0.5
Bone: elastic work0.20.30.4-0.0-0.60.60.6
Bone: endosteal estimation0.10.30.6-0.3-0.50.50.8
Bone: endosteal perimeter0.40.81.41.20.9-0.9-0.4
Bone: final force1.11.82.6-0.8-1.41.41.6
Bone: final moment0.81.42.1-0.6-1.31.21.4
Bone: marrow area0.20.30.7-0.3-0.50.50.8
Bone: maximum diameter1.01.83.01.71.3-1.4-0.8
Bone: maximum force1.12.02.6-0.9-1.51.51.6
Bone: maximum moment0.91.62.1-0.8-1.41.31.5
Bone: minimum diameter0.00.10.20.40.0-0.00.3
Bone: periosteal estimation0.20.51.1-0.0-0.60.61.1
Bone: periosteal perimeter0.20.30.91.00.4-0.40.0
Bone: post-yield work0.60.80.9-0.9-1.01.00.8
Bone: stiffness2.84.45.5-1.7-2.22.12.3
Bone: tissue strength1.61.61.8-1.1-1.31.31.4
Bone: trabecular number1.01.62.71.61.3-1.3-0.6
Bone: trabecular spacing1.21.63.0-1.7-1.31.30.1
Bone: trabecular thickness0.70.92.51.60.5-0.60.7
Bone: trabecular tissue density1.92.73.5-1.9-1.61.61.4
Breakpoint value in progressive ratio session5.15.77.12.12.4-2.4-2.7
Distance traveled before self-admin0.40.40.6-0.4-0.70.60.8
Distance traveled after self-admin0.70.70.90.90.9-0.9-0.8
Delta time in closed arm before/after self-admin1.71.62.8-1.7-1.31.40.3
Delta time in open arm before/after self-admin1.11.01.5-0.9-1.00.91.2
Diff in mean of infusions in LGA sessions2.02.22.51.41.6-1.6-1.5
Extinction: sum of active levers before priming0.90.91.70.50.9-0.9-1.3
Active lever presses in extinction session 62.92.83.01.71.7-1.7-1.7
Delta distance traveled before/after self-admin1.92.02.11.41.5-1.5-1.4
Delta ambulatory time before/after self-admin2.12.32.51.51.6-1.6-1.4
Time in closed arm before self-admin0.40.41.3-0.3-0.50.41.1
Time in closed arm after self-admin0.00.00.00.00.1-0.1-0.2
Time in open arm before self-admin0.60.71.10.80.7-0.7-1.0
Time in open arm after self-admin0.80.91.0-0.9-1.01.00.9
Sum of active levers in priming session hrs 5-60.00.00.0-0.00.0-0.0-0.0
Time to tail flick, vehicle, before self-admin0.70.71.01.00.9-0.9-0.3
Time to tail flick, vehicle, after self-admin0.10.10.3-0.20.2-0.1-0.6
Time to tail flick, test, before self-admin0.50.50.91.00.6-0.6-0.3
Time to tail flick, test, after self-admin0.40.40.50.70.7-0.7-0.3
Delta time to tail flick, vehicle, before/after SA0.70.71.4-1.2-0.80.90.2
Delta time to tail flick, test, before/after SA0.10.10.2-0.10.2-0.2-0.4
Ambulatory time before self-admin0.40.40.5-0.4-0.60.60.7
Ambulatory time after self-admin0.40.40.50.70.6-0.6-0.5
Total heroin consumption2.02.52.61.51.6-1.6-1.5
Area under the delay curve2.22.42.7-1.2-1.61.61.7
Delay disc. indifference point, 0s delay5.56.09.5-2.0-2.32.33.1
Delay disc. indifference point, 16s delay0.10.10.2-0.2-0.30.30.5
Delay disc. indifference point, 2s delay5.35.97.3-2.1-2.42.42.7
Delay disc. indifference point, 24s delay0.90.91.1-0.8-1.01.10.8
Delay disc. indifference point, 4s delay0.90.91.7-0.6-0.90.91.3
Delay disc. indifference point, 8s delay1.51.62.0-1.2-1.41.41.0
Delay discount exponential model param2.12.22.51.21.6-1.6-1.6
Delay discount hyperbolic model param2.93.13.51.41.9-1.8-1.9
Fecal boli incidents, locomotor time 12.02.23.1-1.8-1.51.51.1
Change in fecal boli incidents, locomotor task0.40.31.01.00.3-0.3-0.4
Time >=10cm from walls, locomotor time 10.30.30.5-0.1-0.60.60.7
Bouts of movement, locomotor time 10.10.10.20.30.4-0.4-0.5
Total resting periods, locomotor time 10.20.30.30.50.5-0.5-0.5
Rest time, locomotor task time 10.30.40.50.50.7-0.7-0.4
Distance moved, locomotor task time 10.40.40.8-0.1-0.70.60.9
Vertical activity count, locomotor time 10.30.30.6-0.3-0.70.80.1
Time >=10cm from walls, locomotor time 21.71.82.4-1.3-1.51.51.0
Bouts of movement, locomotor time 20.70.81.11.01.0-1.1-0.3
Total resting periods, locomotor time 20.70.71.01.01.0-1.0-0.2
Rest time, locomotor task time 20.80.91.21.11.0-1.0-0.6
Distance moved, locomotor task time 20.91.11.4-1.2-1.01.00.8
Vertical activity count, locomotor time 21.11.21.8-1.3-1.21.20.5
Weight adjusted by age0.70.71.0-0.9-1.01.00.3
Seeking ratio, delayed vs. immediate footshock4.85.56.22.52.4-2.4-2.1
Locomotion in novel chamber0.10.20.50.10.3-0.2-0.7
Locomotion in novel chamber post-restriction0.81.01.30.90.9-0.9-1.2
Progressive ratio0.30.40.9-1.0-0.40.40.5
Food seeking constrained by brief footshock0.30.40.70.20.8-0.8-0.4
Seeking ratio, punishment vs. effort0.40.40.60.70.7-0.7-0.5
Run reversals in cocaine runway, females0.40.40.50.70.7-0.7-0.5
Run reversals in cocaine runway, males1.81.72.01.31.4-1.4-1.1
Latency to leave start box in cocaine runway1.01.12.31.51.0-1.0-0.5
Latency to leave start box in cocaine runway, F0.20.20.50.70.1-0.10.5
Latency to leave start box in cocaine runway, M2.12.03.01.21.4-1.3-1.7
Cd content in liver0.20.20.3-0.3-0.60.50.5
Co content in liver0.50.60.80.60.7-0.7-0.9
Cu content in liver0.10.10.30.2-0.10.10.6
Fe content in liver0.00.00.1-0.10.1-0.1-0.3
K content in liver0.10.10.20.40.2-0.30.3
Mg content in liver0.10.10.20.50.2-0.20.4
Mn content in liver1.82.13.92.01.5-1.5-0.5
Na content in liver0.60.61.5-0.5-0.60.61.2
Rb content in liver0.20.30.9-0.0-0.40.30.9
Se content in liver0.30.30.40.50.6-0.7-0.4
Sr content in liver0.10.10.2-0.4-0.20.2-0.3
Zn content in liver1.21.33.20.51.0-0.9-1.8