Cyp26c1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 IL gene expression ENSRNOG00000030698 0.15 0.08 2.2e-03 -0 0.08 0.08 0.03 4.1e-01 5.2e-03 6.7e-03 7.5e-02
2 OFC gene expression ENSRNOG00000030698 0.22 0.12 1.1e-03 0.13 0.13 0.14 0.18 5.5e-04 6.3e-04 2.9e-04 4.6e-05
3 PL gene expression ENSRNOG00000030698 0.05 0.03 1.6e-03 0.01 0.02 0.02 0.01 5.9e-02 6.8e-03 9.6e-03 3.7e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.10.40.80.70.10.9
BMI without tail0.51.11.50.90.91.2
Body weight0.52.13.01.71.21.4
Epididymis fat weight0.10.30.70.2-0.30.8
Glucose0.20.20.30.60.40.5
Heart weight1.11.53.70.61.9-0.7
Left kidney weight0.10.30.50.50.7-0.2
Right kidney weight0.20.51.3-0.20.3-1.1
Tail length0.41.31.61.11.11.3
Length with tail0.31.21.71.31.20.7
Length without tail0.00.10.20.5-0.10.3
Liver weight, left0.40.71.01.00.40.9
Liver weight, right0.10.20.40.0-0.70.5
Parametrial fat weight0.00.00.10.3-0.0-0.1
Retroperitoneal fat weight0.00.00.10.3-0.00.2
Intraocular pressure0.30.40.60.50.8-0.4
Extensor digitorum longus weight0.41.52.50.2-1.41.6
Soleus weight1.95.67.02.62.32.2
Tibialis anterior weight0.72.54.80.2-1.72.2
Tibia length0.20.41.00.51.0-0.3
Number of licking bursts2.42.94.1-2.0-1.6-1.4
Food consumed during 24 hour testing period0.20.20.5-0.10.7-0.3
Times rat made contact with spout0.40.50.8-0.5-0.90.6
Mean time between licks in bursts0.20.30.7-0.30.5-0.8
Mean num. licks in bursts2.02.53.41.71.11.9
Std. dev. time between licks in bursts1.72.04.0-1.3-0.6-2.0
Water consumed over 24 hours0.70.91.3-0.7-0.91.1
Indifference point 0 sec0.40.61.00.11.0-0.9
Indifference point AUC1.72.02.7-1.4-1.2-1.6
Indifference point function ln k2.63.75.02.01.52.2
Indifference point function log k2.63.75.02.01.52.2
Delay discounting total patch changes 0 sec0.40.61.20.21.1-0.8
Delay discounting total patch changes 12 sec2.22.95.8-1.6-0.7-2.4
Delay discounting total patch changes 18 sec0.40.61.1-0.7-0.3-1.1
Delay discounting total patch changes 24 sec0.10.10.2-0.30.1-0.4
Delay discounting total patch changes 6 sec1.32.04.8-1.00.4-2.2
Delay discounting time to switch 0 sec1.42.12.4-1.6-1.2-1.5
Delay discounting water rate 0 sec1.01.72.61.21.01.6
Delay discounting water rate 12 sec1.01.51.91.21.41.1
Delay discounting water rate 18 sec1.52.03.21.31.01.8
Delay discounting water rate 24 sec0.71.01.71.00.51.3
Delay discounting water rate 6 sec0.40.61.10.71.10.3
Locomotor activity0.00.10.1-0.30.30.2
Locomotor testing distance0.10.10.2-0.20.40.2
Locomotor testing rearing0.50.71.90.50.01.4
Light reinforcement 10.00.10.10.30.2-0.3
Light reinforcement 21.41.92.3-1.5-1.1-1.5
Reaction time number correct1.01.52.61.30.51.6
Reaction time mean minus median1.62.04.51.22.10.3
Reaction time mean minus median AUC0.81.02.50.61.6-0.2
Reaction time num false alarms0.20.20.6-0.1-0.70.3
Reaction time num false alarms AUC0.10.10.3-0.2-0.50.2
Reaction time trials correct on left1.01.52.61.30.51.6
Reaction time trials on left1.01.42.51.20.51.6
Reaction time mean0.40.50.9-0.80.1-0.9
Reaction time mean AUC0.60.81.5-1.0-0.1-1.2
Median of all reaction times0.70.91.5-1.2-0.5-1.1
Reaction time omissions0.30.40.70.40.80.6
Reaction time false alarm rate0.30.40.5-0.6-0.7-0.5
Reaction time premature initiation rate0.00.10.10.20.3-0.3
Reaction time premature initiations0.40.61.01.00.70.6
Std. dev. reaction times0.91.23.30.51.8-0.4
Reaction time trials completed1.01.42.51.20.51.6
Reaction time trials AUC0.71.02.10.90.21.5
Social response proportion1.31.41.71.21.11.3
Social responses1.82.43.21.81.70.9
Social time0.50.60.7-0.9-0.7-0.8
Conditioned locomotion0.00.00.10.2-0.10.3
Cocaine response after cond. corrected0.10.10.3-0.00.4-0.5
Cocaine response after cond. not corrected0.00.00.0-0.10.1-0.2
Cocaine response before conditioning0.20.30.6-0.3-0.80.3
Saline control response2.43.15.1-1.6-2.3-1.3
Condit. Reinf. active minus inactive responses0.91.23.10.6-0.11.8
Condit. Reinf. active-inactive response ratio0.20.30.70.1-0.20.8
Condit. Reinf. active responses0.60.91.41.10.41.2
Condit. Reinf. inactive responses0.20.30.50.70.5-0.2
Condit. Reinf. lever presses0.10.10.20.00.2-0.5
Condit. Reinf. lever reinforcers received0.30.40.70.70.10.8
Pavlov. Cond. lever latency0.50.71.60.2-0.71.3
Pavlov. Cond. magazine entry latency0.20.20.6-0.8-0.1-0.1
Pavlov. Cond. change in total contacts0.30.40.6-0.8-0.5-0.6
Pavlov. Cond. index score0.20.20.4-0.50.2-0.6
Pavlov. Cond. latency score0.10.10.2-0.30.3-0.5
Pavlov. Cond. lever contacts0.30.41.0-0.20.4-1.0
Pavlov. Cond. magazine entry number1.41.82.91.70.91.2
Pavlov. Cond. intertrial magazine entries0.50.61.40.5-0.51.2
Pavlov. Cond. lever-magazine prob. diff.0.20.20.4-0.60.0-0.5
Pavlov. Cond. response bias0.40.61.0-0.9-0.0-1.0
Conditioned reinforcement - actives2.12.12.71.61.71.0
Conditioned reinforcement - inactives3.84.44.72.22.02.1
Conditioned locomotion2.02.44.11.72.00.5
Intermittent access intake day 1-15 change7.07.09.02.93.01.9
Intermittent access intake escalation6.56.49.12.73.01.6
Intermittent access intake escalation 25.25.16.72.32.61.8
Intermitt. access day 1 inactive lever presses0.20.20.30.40.50.3
Intermitt. access day 15 inactive lever presses3.03.34.72.02.21.0
Intermitt. access escalation Index0.30.20.60.1-0.40.8
Intermittent access day 1 total infusions0.70.81.40.90.41.2
Intermittent access day 15 total infusions6.47.19.23.02.92.0
Intermittent access terminal intake (last 3 days)4.75.16.52.62.31.9
Intermittent access total infusions2.32.53.41.81.21.6
Intermittent access day 1 locomotion0.30.30.40.50.60.5
Intermittent access day 15 total locomotion1.61.73.11.41.80.1
Intermittent access total locomotion0.10.10.20.40.30.3
Intermittent access standard deviation5.55.97.62.52.82.0
Cocaine induced anxiety0.91.02.3-0.8-1.50.3
Post-drug Anxiety1.41.62.5-1.1-1.6-1.0
Baseline Anxiety0.30.30.8-0.00.2-0.9
Lifetime Intake1.61.72.61.61.01.2
Incentive Sensitization - Responses7.97.99.53.12.92.4
Incentive Sensitization - Breakpoint7.67.79.33.02.92.3
Progressive ratio test 1 active lever presses1.21.31.91.40.81.1
Progressive ratio test 1 breakpoint1.21.31.91.40.81.1
Progressive ratio test 1 inactive lever presses3.73.94.92.11.62.2
Progressive ratio test 2 active lever presses6.06.48.42.92.62.1
Progressive ratio test 2 breakpoint7.17.810.53.22.72.4
Progressive ratio test 2 inactive lever presses3.23.74.72.21.91.7
Total sessions with >9 infusions0.40.40.60.80.70.2
Short access day 1 total inactive lever presses1.82.02.81.71.41.1
Short access day 10 total inactive lever presses0.50.50.8-0.9-0.9-0.3
Short access day 1 total infusions0.00.00.10.1-0.1-0.3
Short access day 10 total infusions0.10.10.10.30.3-0.1
Short access total infusions0.50.51.01.00.40.6
Short access day 1 locomotion0.00.00.00.1-0.20.1
Short access day 10 total locomotion0.10.10.2-0.50.0-0.2
Short access total locomotion0.10.10.2-0.4-0.3-0.3
Compulsive drug intake1.71.73.11.30.71.8
One hour access (0.3 mA shock)10.512.215.63.93.43.1
One hour access (shock baseline)2.63.13.92.02.01.2
Number of responses in last shaping day1.21.22.21.51.20.3
Context. condit. distance diff. score1.11.32.91.10.01.7
Locomotion velocity, session 11.41.52.8-1.2-0.1-1.7
Locomotion distance, session 10.30.40.7-0.6-0.4-0.9
Locomotion velocity, session 20.10.10.2-0.10.30.5
Locomotion distance, session 20.20.30.4-0.6-0.7-0.0
Locomotion velocity, session 30.20.30.60.50.10.8
Locomotion distance, session 30.40.41.00.4-0.11.0
Stereotopy head waving bouts, day 30.20.30.40.60.60.2
Stereotopy head waving duration, day 30.10.20.30.50.40.3
Locomotion velocity, session 71.61.74.60.7-0.22.2
Locomotion distance, session 71.11.43.50.80.21.9
Stereotopy head waving bouts, day 70.10.10.30.40.5-0.1
Stereotopy head waving duration, day 70.60.71.30.91.1-0.0
Locomotion velocity, session 80.30.40.50.60.50.7
Locomotion distance, session 80.50.81.40.1-1.01.2
Degree of sensitization distance0.30.30.4-0.3-0.70.5
Degree of sensitization stereotypy0.30.40.60.50.8-0.4
Condit. Reinf. active minus inactive responses0.30.40.9-0.9-0.4-0.3
Condit. Reinf. active-inactive response ratio0.20.20.3-0.50.3-0.6
Condit. Reinf. active responses0.20.20.3-0.6-0.60.1
Condit. Reinf. inactive responses0.10.20.5-0.0-0.70.2
Incentive salience index mean1.31.62.6-1.6-1.3-0.8
Condit. Reinf. lever presses3.04.04.9-2.2-2.2-1.6
Time in familiar zone, hab. session 10.50.51.00.61.00.0
Time in novel zone, hab. session 10.70.61.1-0.9-1.0-0.2
Total zone transitions, hab. session 10.00.00.00.1-0.10.1
Total locomotion distance, hab. session 11.42.02.4-1.5-1.6-1.1
Locomotion velocity, hab. session 12.53.64.3-2.0-2.1-1.5
Time in familiar zone, hab. session 20.20.20.3-0.00.5-0.5
Time in novel zone, hab. session 20.00.00.00.10.10.1
Total zone transitions, hab. session 20.30.40.9-0.5-0.2-1.0
Total locomotion distance, hab. session 20.60.81.1-1.0-0.7-1.1
Locomotion velocity, hab. session 21.01.41.6-1.3-1.1-1.1
Novel to familiar place preference ratio1.41.53.41.00.51.8
Novelty place preference1.71.83.71.10.61.9
Time in novel zone, NPP test1.61.73.71.00.61.9
Total zone transitions, NPP test1.01.41.7-1.3-1.3-0.9
Total locomotion distance, NPP test2.53.54.6-2.1-1.8-1.6
Locomotion velocity, NPP test2.63.84.8-2.2-2.1-1.5
Pavlov. Cond. lever latency1.11.42.61.21.6-0.3
Pavlov. Cond. magazine entry latency0.81.01.9-1.4-0.6-0.9
Pavlov. Cond. change in total contacts0.20.30.7-0.8-0.1-0.3
Pavlov. Cond. index score1.11.52.2-1.5-1.4-0.4
Pavlov. Cond. latency score1.41.82.8-1.6-1.7-0.3
Pavlov. Cond. lever contacts1.82.23.7-1.6-1.9-0.4
Pavlov. Cond. magazine entry number0.10.20.30.5-0.30.4
Pavlov. Cond. intertrial magazine entries0.00.00.10.0-0.20.1
Pavlov. Cond. lever-magazine prob. diff.1.51.92.9-1.7-1.6-0.6
Pavlov. Cond. response bias0.50.61.3-1.1-0.4-0.6
Bone: apparent density7.412.215.84.03.62.8
Bone surface6.511.514.43.73.82.5
Bone volume6.210.412.83.63.32.7
Bone: connectivity density7.111.113.33.63.42.9
Bone: cortical apparent density1.21.51.8-1.3-1.0-1.3
Bone: cortical area2.23.44.12.01.81.6
Bone: cortical porosity0.20.20.60.1-0.30.8
Bone: cortical porosity0.60.61.40.60.51.2
Bone: cortical thickness0.20.40.8-0.5-0.4-0.9
Bone: cortical thickness1.51.71.9-1.4-1.1-1.4
Bone: cortical tissue density1.11.51.8-1.3-1.0-1.3
Bone: elastic displacement0.30.40.6-0.8-0.4-0.6
Bone: elastic work0.00.10.1-0.00.30.3
Bone: endosteal estimation8.418.220.44.54.24.0
Bone: endosteal perimeter8.116.619.14.44.13.7
Bone: final force1.01.62.51.31.60.7
Bone: final moment1.32.13.71.51.90.6
Bone: marrow area8.718.721.24.64.34.0
Bone: maximum diameter9.617.621.74.74.03.9
Bone: maximum force3.05.36.82.52.61.6
Bone: maximum moment3.56.08.72.72.91.5
Bone: minimum diameter10.819.923.34.84.24.3
Bone: periosteal estimation7.114.617.44.23.93.4
Bone: periosteal perimeter5.79.411.13.32.83.0
Bone: post-yield work3.54.86.12.52.31.7
Bone: stiffness2.13.34.12.01.32.0
Bone: tissue strength0.60.61.20.81.10.2
Bone: trabecular number7.010.813.63.63.72.4
Bone: trabecular spacing2.93.74.9-2.2-1.9-1.6
Bone: trabecular thickness4.95.97.52.72.42.1
Bone: trabecular tissue density0.60.91.21.10.51.1
Breakpoint value in progressive ratio session0.20.20.50.1-0.70.2
Distance traveled before self-admin0.40.40.9-0.2-0.50.9
Distance traveled after self-admin1.51.73.21.10.81.8
Delta time in closed arm before/after self-admin0.10.10.2-0.4-0.2-0.3
Delta time in open arm before/after self-admin0.30.30.7-0.0-0.40.8
Diff in mean of infusions in LGA sessions0.91.12.50.80.31.6
Extinction: sum of active levers before priming0.20.20.50.4-0.00.7
Active lever presses in extinction session 61.71.63.81.00.02.0
Delta distance traveled before/after self-admin1.51.62.11.51.01.3
Delta ambulatory time before/after self-admin2.52.73.51.91.21.8
Time in closed arm before self-admin0.40.41.30.1-0.01.1
Time in closed arm after self-admin1.21.32.3-1.3-1.50.1
Time in open arm before self-admin0.10.10.40.00.1-0.6
Time in open arm after self-admin0.30.30.50.70.70.1
Sum of active levers in priming session hrs 5-60.20.20.40.00.7-0.2
Time to tail flick, vehicle, before self-admin0.60.60.8-0.7-0.8-0.9
Time to tail flick, vehicle, after self-admin0.80.91.80.0-0.91.4
Time to tail flick, test, before self-admin2.12.14.71.20.52.2
Time to tail flick, test, after self-admin0.30.30.70.1-0.20.8
Delta time to tail flick, vehicle, before/after SA1.71.64.40.7-0.22.1
Delta time to tail flick, test, before/after SA0.10.10.1-0.1-0.3-0.2
Ambulatory time before self-admin0.40.40.5-0.6-0.70.5
Ambulatory time after self-admin2.52.75.81.30.82.4
Total heroin consumption0.10.10.30.60.20.3
Area under the delay curve0.60.60.8-0.8-0.9-0.5
Delay disc. indifference point, 0s delay0.91.01.4-0.2-1.21.2
Delay disc. indifference point, 16s delay0.00.00.10.10.1-0.3
Delay disc. indifference point, 2s delay0.00.10.1-0.3-0.2-0.2
Delay disc. indifference point, 24s delay0.90.91.2-1.1-1.0-0.7
Delay disc. indifference point, 4s delay0.80.91.6-0.9-1.3-0.4
Delay disc. indifference point, 8s delay2.72.73.2-1.8-1.5-1.7
Delay discount exponential model param0.60.60.80.90.90.6
Delay discount hyperbolic model param0.50.50.70.80.80.6
Fecal boli incidents, locomotor time 10.50.61.40.2-0.51.2
Change in fecal boli incidents, locomotor task0.40.41.0-0.5-0.1-1.0
Time >=10cm from walls, locomotor time 10.80.81.30.90.51.1
Bouts of movement, locomotor time 10.10.10.20.4-0.10.1
Total resting periods, locomotor time 10.00.10.10.3-0.20.1
Rest time, locomotor task time 10.20.20.40.50.00.6
Distance moved, locomotor task time 10.30.30.6-0.8-0.5-0.4
Vertical activity count, locomotor time 10.40.40.7-0.30.6-0.9
Time >=10cm from walls, locomotor time 20.20.30.6-0.2-0.40.8
Bouts of movement, locomotor time 23.23.54.3-2.1-2.0-1.5
Total resting periods, locomotor time 23.23.44.3-2.0-2.1-1.3
Rest time, locomotor task time 20.40.50.9-0.5-1.0-0.4
Distance moved, locomotor task time 20.20.30.80.20.20.9
Vertical activity count, locomotor time 20.30.30.80.00.90.2
Weight adjusted by age0.10.10.1-0.3-0.3-0.3
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.2-0.50.0
Locomotion in novel chamber2.32.93.91.81.32.0
Locomotion in novel chamber post-restriction0.20.20.40.6-0.20.5
Progressive ratio0.30.30.9-0.3-1.0-0.1
Food seeking constrained by brief footshock1.31.62.21.41.50.9
Seeking ratio, punishment vs. effort0.81.02.10.71.50.5
Run reversals in cocaine runway, females0.10.10.2-0.30.2-0.4
Run reversals in cocaine runway, males1.21.12.2-0.8-0.7-1.5
Latency to leave start box in cocaine runway1.21.32.41.10.61.6
Latency to leave start box in cocaine runway, F1.71.83.91.20.52.0
Latency to leave start box in cocaine runway, M0.20.20.40.40.60.1
Cd content in liver0.70.82.1-0.30.5-1.4
Co content in liver0.60.71.5-0.30.8-1.2
Cu content in liver2.63.27.1-1.5-0.3-2.7
Fe content in liver3.34.04.9-2.2-1.6-2.1
K content in liver1.81.83.3-1.4-1.8-0.3
Mg content in liver2.12.22.8-1.7-1.7-1.0
Mn content in liver3.43.94.1-2.0-1.9-2.0
Na content in liver5.15.48.0-2.5-2.8-1.4
Rb content in liver0.10.10.40.1-0.10.6
Se content in liver20.725.032.2-5.4-3.7-5.7
Sr content in liver1.21.12.41.01.5-0.0
Zn content in liver6.16.79.8-3.1-2.7-1.8