Mbd3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000028956 0.06 0.05 3.2e-03 0.02 0.01 0.02 0.01 2.7e-03 1.2e-02 9.7e-04 1.4e-02
2 Brain gene expression ENSRNOG00000028956 0.11 0.07 3.1e-10 0.08 0.09 0.09 0.08 8.3e-08 2.0e-08 2.8e-08 3.5e-08
3 Liver mRNA stability ENSRNOG00000028956 0.04 0.03 4.0e-05 0.04 0.04 0.04 0.04 5.2e-05 7.1e-05 2.7e-05 8.5e-05
4 NAcc gene expression ENSRNOG00000028956 0.07 0.05 8.7e-03 0.01 0.01 0.02 0.02 4.5e-02 2.9e-02 1.2e-02 1.3e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail4.715.323.11.84.84.63.8
BMI without tail3.47.19.22.92.62.03.0
Body weight1.04.35.71.72.42.22.0
Epididymis fat weight0.40.92.2-1.5-0.7-0.8-0.2
Glucose1.21.92.41.21.51.41.3
Heart weight0.20.30.70.6-0.5-0.80.3
Left kidney weight0.10.20.7-0.3-0.3-0.0-0.8
Right kidney weight0.92.64.0-0.2-2.0-2.0-1.5
Tail length1.75.310.60.5-2.9-3.3-1.3
Length with tail1.24.67.2-0.2-2.7-2.6-2.1
Length without tail0.40.92.0-1.1-0.5-0.0-1.4
Liver weight, left1.62.64.1-0.22.01.91.6
Liver weight, right1.01.63.0-0.51.61.70.7
Parametrial fat weight0.50.91.91.4-0.8-1.10.0
Retroperitoneal fat weight0.20.70.9-0.01.00.90.9
Intraocular pressure0.71.02.31.10.2-0.51.5
Extensor digitorum longus weight4.216.822.23.14.74.14.3
Soleus weight7.120.529.63.15.45.24.0
Tibialis anterior weight1.03.54.71.42.22.11.7
Tibia length0.61.62.9-0.4-1.6-1.7-0.9
Number of licking bursts0.40.51.10.70.4-0.21.1
Food consumed during 24 hour testing period0.81.01.61.20.90.70.9
Times rat made contact with spout0.50.61.11.00.60.31.0
Mean time between licks in bursts2.73.76.5-1.0-2.4-2.6-1.2
Mean num. licks in bursts0.00.10.10.30.10.3-0.1
Std. dev. time between licks in bursts0.50.70.90.7-1.0-0.8-0.8
Water consumed over 24 hours0.40.51.00.60.81.0-0.1
Indifference point 0 sec0.10.10.20.10.40.5-0.0
Indifference point AUC0.60.61.3-0.3-1.0-1.1-0.5
Indifference point function ln k0.70.92.41.50.70.50.8
Indifference point function log k0.70.92.41.50.70.50.8
Delay discounting total patch changes 0 sec0.00.10.10.20.40.40.1
Delay discounting total patch changes 12 sec0.30.51.10.30.70.41.0
Delay discounting total patch changes 18 sec0.81.11.6-0.8-1.2-1.2-0.8
Delay discounting total patch changes 24 sec0.20.30.7-0.8-0.3-0.3-0.4
Delay discounting total patch changes 6 sec0.30.50.7-0.8-0.6-0.6-0.7
Delay discounting time to switch 0 sec1.82.76.0-2.40.91.8-0.9
Delay discounting water rate 0 sec2.33.710.43.20.4-0.52.0
Delay discounting water rate 12 sec3.04.57.62.81.60.82.7
Delay discounting water rate 18 sec3.14.18.73.00.3-0.92.6
Delay discounting water rate 24 sec3.64.99.33.01.1-0.13.0
Delay discounting water rate 6 sec1.62.35.62.4-0.2-1.01.5
Locomotor activity2.94.67.2-1.0-2.4-2.1-2.7
Locomotor testing distance1.62.63.6-0.6-1.9-1.8-1.9
Locomotor testing rearing0.30.51.31.10.0-0.30.7
Light reinforcement 15.810.512.9-3.2-3.6-3.1-3.1
Light reinforcement 22.22.83.4-1.6-1.9-1.5-1.7
Reaction time number correct2.23.26.32.51.10.52.2
Reaction time mean minus median0.40.61.00.8-0.8-1.0-0.1
Reaction time mean minus median AUC0.10.10.40.0-0.10.2-0.6
Reaction time num false alarms2.23.19.43.10.60.11.6
Reaction time num false alarms AUC2.33.39.23.00.80.11.8
Reaction time trials correct on left2.23.26.32.51.10.52.2
Reaction time trials on left2.13.06.02.51.10.52.1
Reaction time mean0.00.00.10.20.10.2-0.3
Reaction time mean AUC0.10.10.10.30.10.3-0.3
Median of all reaction times0.20.20.6-0.00.50.8-0.1
Reaction time omissions0.40.50.7-0.7-0.7-0.5-0.9
Reaction time false alarm rate0.40.62.01.40.30.10.4
Reaction time premature initiation rate0.60.81.9-0.0-1.1-1.4-0.1
Reaction time premature initiations0.81.21.81.3-0.6-1.21.0
Std. dev. reaction times0.20.20.40.6-0.4-0.5-0.2
Reaction time trials completed2.13.06.02.51.10.52.1
Reaction time trials AUC2.53.57.12.71.10.42.3
Social response proportion2.42.66.2-2.5-1.1-0.7-1.6
Social responses5.16.69.7-1.2-3.1-2.9-2.7
Social time0.60.81.7-1.30.70.90.1
Conditioned locomotion2.02.44.11.41.51.02.0
Cocaine response after cond. corrected7.68.511.03.32.82.13.3
Cocaine response after cond. not corrected8.29.112.03.42.92.13.5
Cocaine response before conditioning0.30.40.60.0-0.8-0.7-0.6
Saline control response0.00.00.1-0.20.20.10.3
Condit. Reinf. active minus inactive responses1.31.63.70.6-1.5-1.9-0.2
Condit. Reinf. active-inactive response ratio0.20.30.60.2-0.1-0.60.8
Condit. Reinf. active responses1.31.83.41.1-1.6-1.8-0.6
Condit. Reinf. inactive responses0.91.11.91.4-1.1-1.1-0.5
Condit. Reinf. lever presses1.21.73.80.5-1.6-2.0-0.3
Condit. Reinf. lever reinforcers received1.21.72.81.5-1.3-1.7-0.1
Pavlov. Cond. lever latency0.81.12.7-1.60.91.10.2
Pavlov. Cond. magazine entry latency0.40.51.01.0-0.6-0.7-0.2
Pavlov. Cond. change in total contacts0.60.81.31.1-0.8-1.1-0.2
Pavlov. Cond. index score0.91.12.51.6-0.9-1.1-0.1
Pavlov. Cond. latency score0.70.91.91.4-0.9-1.0-0.3
Pavlov. Cond. lever contacts0.91.23.01.7-0.8-1.10.1
Pavlov. Cond. magazine entry number0.50.60.9-1.00.90.90.3
Pavlov. Cond. intertrial magazine entries0.50.71.10.90.70.41.1
Pavlov. Cond. lever-magazine prob. diff.0.71.01.81.3-0.9-1.1-0.3
Pavlov. Cond. response bias1.31.82.81.6-1.3-1.7-0.2
Conditioned reinforcement - actives1.71.63.00.6-1.5-1.7-0.9
Conditioned reinforcement - inactives0.80.91.41.20.80.51.1
Conditioned locomotion4.65.69.8-0.3-3.0-3.1-1.9
Intermittent access intake day 1-15 change4.04.07.90.2-2.5-2.8-1.3
Intermittent access intake escalation3.83.78.50.9-2.3-2.9-0.5
Intermittent access intake escalation 24.44.310.00.6-2.6-3.2-0.6
Intermitt. access day 1 inactive lever presses1.21.34.32.1-0.2-0.70.7
Intermitt. access day 15 inactive lever presses0.30.30.70.3-0.7-0.8-0.2
Intermitt. access escalation Index0.50.50.7-0.90.20.7-0.7
Intermittent access day 1 total infusions0.10.10.30.60.20.20.1
Intermittent access day 15 total infusions1.31.53.10.9-1.4-1.8-0.4
Intermittent access terminal intake (last 3 days)1.01.11.71.1-1.0-1.3-0.4
Intermittent access total infusions0.40.41.11.0-0.4-0.70.0
Intermittent access day 1 locomotion0.20.20.50.1-0.6-0.7-0.3
Intermittent access day 15 total locomotion2.42.64.5-0.6-2.0-2.1-1.2
Intermittent access total locomotion0.70.81.40.1-1.1-1.2-0.8
Intermittent access standard deviation2.02.14.21.2-1.6-2.1-0.5
Cocaine induced anxiety1.21.42.8-1.2-1.0-0.6-1.7
Post-drug Anxiety1.71.83.9-2.0-0.9-0.3-1.6
Baseline Anxiety0.10.10.3-0.1-0.2-0.30.6
Lifetime Intake0.20.20.70.8-0.3-0.5-0.0
Incentive Sensitization - Responses1.01.03.21.8-0.2-0.70.6
Incentive Sensitization - Breakpoint0.80.82.31.5-0.3-0.70.4
Progressive ratio test 1 active lever presses0.30.30.80.90.30.10.6
Progressive ratio test 1 breakpoint0.30.40.80.90.40.20.6
Progressive ratio test 1 inactive lever presses0.00.00.00.1-0.2-0.1-0.2
Progressive ratio test 2 active lever presses0.80.82.61.6-0.2-0.70.5
Progressive ratio test 2 breakpoint0.50.51.41.2-0.4-0.70.0
Progressive ratio test 2 inactive lever presses0.10.10.30.5-0.2-0.3-0.3
Total sessions with >9 infusions0.40.41.61.30.1-0.0-0.3
Short access day 1 total inactive lever presses0.10.10.2-0.4-0.3-0.3-0.5
Short access day 10 total inactive lever presses0.20.20.50.70.0-0.30.3
Short access day 1 total infusions0.40.41.1-0.6-0.5-0.3-1.0
Short access day 10 total infusions0.30.41.21.1-0.1-0.30.3
Short access total infusions0.10.10.50.7-0.0-0.1-0.1
Short access day 1 locomotion0.90.91.50.3-1.1-1.0-1.2
Short access day 10 total locomotion2.83.06.11.0-2.0-2.5-1.0
Short access total locomotion0.90.91.30.9-1.0-1.1-0.7
Compulsive drug intake0.60.61.40.01.11.20.2
One hour access (0.3 mA shock)0.30.30.90.90.40.30.4
One hour access (shock baseline)0.40.51.51.2-0.2-0.50.4
Number of responses in last shaping day0.70.72.51.6-0.3-0.6-0.2
Context. condit. distance diff. score0.50.61.21.10.60.60.8
Locomotion velocity, session 11.21.32.6-1.3-0.9-0.4-1.6
Locomotion distance, session 13.03.99.5-3.1-0.70.2-2.4
Locomotion velocity, session 27.08.313.6-3.7-2.5-1.5-3.3
Locomotion distance, session 25.47.715.3-3.9-1.9-0.9-3.3
Locomotion velocity, session 33.84.47.4-0.8-2.7-2.7-1.5
Locomotion distance, session 30.30.30.91.00.1-0.00.5
Stereotopy head waving bouts, day 34.85.87.2-2.3-2.7-2.2-2.4
Stereotopy head waving duration, day 34.96.08.2-2.1-2.9-2.5-2.3
Locomotion velocity, session 71.61.75.82.4-0.6-0.8-0.0
Locomotion distance, session 71.62.05.52.40.60.11.4
Stereotopy head waving bouts, day 70.50.61.2-0.9-0.30.3-1.1
Stereotopy head waving duration, day 70.81.02.3-1.1-0.7-0.1-1.5
Locomotion velocity, session 82.12.54.9-2.0-1.1-0.3-2.2
Locomotion distance, session 80.60.92.1-1.5-0.6-0.2-1.1
Degree of sensitization distance0.30.30.50.50.70.60.4
Degree of sensitization stereotypy1.01.12.70.31.31.60.2
Condit. Reinf. active minus inactive responses3.23.55.4-1.3-2.3-2.1-1.6
Condit. Reinf. active-inactive response ratio1.11.22.7-0.1-1.5-1.6-0.3
Condit. Reinf. active responses4.75.77.0-2.6-2.4-1.9-2.6
Condit. Reinf. inactive responses3.13.67.2-2.7-1.3-0.6-2.3
Incentive salience index mean2.83.44.1-2.0-1.9-1.4-2.0
Condit. Reinf. lever presses2.22.97.2-2.7-0.50.4-2.0
Time in familiar zone, hab. session 11.21.12.40.2-1.3-1.6-0.3
Time in novel zone, hab. session 10.60.61.40.50.91.2-0.2
Total zone transitions, hab. session 12.73.86.7-2.6-1.4-0.7-2.4
Total locomotion distance, hab. session 13.14.58.5-2.6-1.6-0.6-2.9
Locomotion velocity, hab. session 14.15.910.2-3.2-1.8-1.0-3.0
Time in familiar zone, hab. session 23.43.57.6-0.1-2.5-2.8-0.7
Time in novel zone, hab. session 22.72.75.70.72.12.40.6
Total zone transitions, hab. session 23.54.512.5-3.5-0.20.8-2.2
Total locomotion distance, hab. session 24.05.312.0-3.5-1.5-0.7-2.6
Locomotion velocity, hab. session 25.16.916.1-4.0-1.6-0.6-3.0
Novel to familiar place preference ratio2.22.45.50.51.92.30.2
Novelty place preference1.31.43.40.21.41.90.0
Time in novel zone, NPP test1.61.73.90.51.62.00.2
Total zone transitions, NPP test2.63.811.5-3.4-0.40.3-1.8
Total locomotion distance, NPP test1.72.36.2-2.5-0.30.5-1.7
Locomotion velocity, NPP test2.02.97.5-2.7-0.60.2-1.9
Pavlov. Cond. lever latency0.60.71.51.20.1-0.41.1
Pavlov. Cond. magazine entry latency2.22.94.3-1.2-2.1-2.0-1.3
Pavlov. Cond. change in total contacts0.20.20.4-0.6-0.3-0.2-0.5
Pavlov. Cond. index score0.81.11.7-1.3-0.9-0.5-1.2
Pavlov. Cond. latency score1.11.42.4-1.5-0.9-0.4-1.5
Pavlov. Cond. lever contacts1.01.12.3-1.5-0.40.2-1.5
Pavlov. Cond. magazine entry number0.70.81.10.81.10.90.8
Pavlov. Cond. intertrial magazine entries0.20.20.30.3-0.2-0.60.5
Pavlov. Cond. lever-magazine prob. diff.1.11.31.8-1.3-1.1-0.8-1.3
Pavlov. Cond. response bias1.11.31.7-1.1-1.3-1.1-1.0
Bone: apparent density1.01.73.8-1.6-0.20.6-1.9
Bone surface2.23.99.6-2.2-0.90.3-3.1
Bone volume1.93.29.1-1.7-0.80.3-3.0
Bone: connectivity density0.61.01.6-1.20.31.0-1.2
Bone: cortical apparent density0.50.61.1-0.11.01.00.7
Bone: cortical area0.40.61.30.70.81.1-0.1
Bone: cortical porosity0.70.71.6-0.5-0.9-0.6-1.3
Bone: cortical porosity0.60.61.7-0.8-0.30.1-1.3
Bone: cortical thickness0.61.12.20.41.31.50.4
Bone: cortical thickness1.01.13.11.80.2-0.31.1
Bone: cortical tissue density0.30.40.7-0.10.80.80.6
Bone: elastic displacement0.20.20.3-0.2-0.5-0.5-0.6
Bone: elastic work0.40.61.61.30.60.60.2
Bone: endosteal estimation0.10.30.60.30.60.80.1
Bone: endosteal perimeter0.20.41.00.0-0.7-0.4-1.0
Bone: final force0.91.52.61.01.51.60.4
Bone: final moment0.71.22.10.91.31.40.3
Bone: marrow area0.10.30.70.30.60.80.2
Bone: maximum diameter0.71.32.9-0.6-1.2-0.8-1.7
Bone: maximum force1.11.92.61.51.51.60.7
Bone: maximum moment0.91.52.11.31.41.50.6
Bone: minimum diameter0.00.10.20.30.00.3-0.4
Bone: periosteal estimation0.20.41.10.30.71.1-0.3
Bone: periosteal perimeter0.20.30.90.2-0.30.0-1.0
Bone: post-yield work0.60.91.00.91.00.81.0
Bone: stiffness2.23.55.51.42.22.41.3
Bone: tissue strength0.90.91.8-0.21.31.40.4
Bone: trabecular number1.11.73.5-1.3-1.1-0.6-1.9
Bone: trabecular spacing2.33.06.62.01.10.12.6
Bone: trabecular thickness2.22.77.3-1.7-0.30.7-2.7
Bone: trabecular tissue density1.11.52.5-0.31.61.41.3
Breakpoint value in progressive ratio session3.23.67.4-0.6-2.4-2.7-0.8
Distance traveled before self-admin0.30.30.50.40.60.7-0.1
Distance traveled after self-admin0.50.50.7-0.3-0.8-0.8-0.8
Delta time in closed arm before/after self-admin3.43.36.22.51.20.22.4
Delta time in open arm before/after self-admin0.80.71.7-0.51.01.30.2
Diff in mean of infusions in LGA sessions1.92.13.5-1.9-1.5-1.4-0.9
Extinction: sum of active levers before priming0.90.92.30.6-1.0-1.50.3
Active lever presses in extinction session 62.01.93.2-0.3-1.7-1.8-1.2
Delta distance traveled before/after self-admin1.31.42.0-1.0-1.4-1.3-0.9
Delta ambulatory time before/after self-admin1.61.72.3-1.2-1.5-1.3-1.2
Time in closed arm before self-admin1.11.32.7-1.60.61.2-0.9
Time in closed arm after self-admin0.00.00.0-0.2-0.1-0.10.1
Time in open arm before self-admin0.70.71.31.0-0.8-1.1-0.0
Time in open arm after self-admin0.60.71.00.51.00.90.7
Sum of active levers in priming session hrs 5-60.00.00.0-0.1-0.0-0.1-0.1
Time to tail flick, vehicle, before self-admin1.11.12.2-1.1-0.8-0.4-1.5
Time to tail flick, vehicle, after self-admin0.30.30.80.3-0.2-0.50.9
Time to tail flick, test, before self-admin0.80.71.6-1.0-0.6-0.2-1.3
Time to tail flick, test, after self-admin0.70.71.7-1.3-0.6-0.3-0.9
Delta time to tail flick, vehicle, before/after SA1.71.63.61.50.80.31.9
Delta time to tail flick, test, before/after SA0.10.10.20.1-0.2-0.40.4
Ambulatory time before self-admin0.20.20.40.40.60.60.1
Ambulatory time after self-admin0.30.30.5-0.2-0.6-0.6-0.7
Total heroin consumption1.41.62.6-0.7-1.6-1.6-1.0
Area under the delay curve1.71.93.20.91.71.80.8
Delay disc. indifference point, 0s delay3.84.19.7-0.82.43.1-0.1
Delay disc. indifference point, 16s delay0.20.20.3-0.50.40.50.2
Delay disc. indifference point, 2s delay3.53.97.21.02.52.71.1
Delay disc. indifference point, 24s delay1.01.01.30.91.00.91.1
Delay disc. indifference point, 4s delay0.70.71.90.01.01.40.2
Delay disc. indifference point, 8s delay1.71.72.71.61.41.11.1
Delay discount exponential model param1.71.82.9-1.0-1.6-1.7-0.9
Delay discount hyperbolic model param2.32.43.8-1.2-1.9-2.0-1.0
Fecal boli incidents, locomotor time 11.01.12.20.21.51.20.8
Change in fecal boli incidents, locomotor task1.61.55.72.4-0.3-0.3-0.2
Time >=10cm from walls, locomotor time 10.30.30.50.20.60.7-0.4
Bouts of movement, locomotor time 10.10.10.20.5-0.3-0.50.1
Total resting periods, locomotor time 10.10.20.30.3-0.5-0.5-0.1
Rest time, locomotor task time 10.30.30.6-0.7-0.6-0.4-0.5
Distance moved, locomotor task time 10.30.40.80.50.60.9-0.3
Vertical activity count, locomotor time 12.02.06.92.60.60.21.0
Time >=10cm from walls, locomotor time 22.22.34.52.11.41.01.3
Bouts of movement, locomotor time 22.02.14.9-2.2-0.9-0.4-1.6
Total resting periods, locomotor time 22.12.25.3-2.3-0.9-0.3-1.6
Rest time, locomotor task time 20.91.01.4-1.2-0.9-0.6-1.2
Distance moved, locomotor task time 20.70.81.20.71.00.81.1
Vertical activity count, locomotor time 21.81.93.92.01.10.61.5
Weight adjusted by age2.02.35.92.40.90.21.6
Seeking ratio, delayed vs. immediate footshock3.33.85.6-0.9-2.4-2.2-2.0
Locomotion in novel chamber0.20.20.60.1-0.4-0.8-0.1
Locomotion in novel chamber post-restriction0.60.71.01.0-0.9-1.0-0.1
Progressive ratio0.50.62.1-1.40.50.40.3
Food seeking constrained by brief footshock1.41.85.8-2.4-0.6-0.3-0.9
Seeking ratio, punishment vs. effort0.30.30.6-0.5-0.6-0.3-0.7
Run reversals in cocaine runway, females0.30.30.4-0.4-0.6-0.5-0.6
Run reversals in cocaine runway, males1.71.61.8-1.4-1.3-1.0-1.3
Latency to leave start box in cocaine runway1.11.33.1-0.3-1.1-0.8-1.8
Latency to leave start box in cocaine runway, F0.60.72.70.1-0.10.2-1.6
Latency to leave start box in cocaine runway, M1.51.43.60.1-1.5-1.9-0.1
Cd content in liver0.10.10.30.00.50.50.1
Co content in liver0.30.40.8-0.4-0.7-0.9-0.4
Cu content in liver0.30.30.6-0.60.20.6-0.8
Fe content in liver0.00.10.10.2-0.1-0.30.3
K content in liver1.01.02.3-1.5-0.10.3-1.2
Mg content in liver0.80.81.7-1.3-0.10.4-1.2
Mn content in liver2.22.56.1-1.4-1.3-0.4-2.5
Na content in liver1.01.01.7-1.30.81.2-0.5
Rb content in liver0.40.50.9-0.70.40.9-0.7
Se content in liver0.30.30.5-0.7-0.5-0.4-0.6
Sr content in liver0.40.30.80.70.1-0.30.9
Zn content in liver1.11.23.20.4-1.1-1.80.6