Syt7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000026432 0.09 0.05 6.3e-07 0.06 0.06 0.06 0.06 5.1e-06 2.0e-06 3.5e-06 2.4e-06
2 Brain intron excision ratio chr1:207059157:207076600 0.05 0.03 1.1e-04 0.04 0.05 0.04 0.04 6.3e-05 2.4e-05 6.9e-05 4.7e-05
3 PL gene expression ENSRNOG00000026432 0.04 0.03 9.8e-03 0.02 0.01 0.01 0.01 1.6e-02 3.1e-02 9.0e-02 2.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.92.97.31.0-2.70.7
BMI without tail0.40.92.6-0.2-1.6-0.1
Body weight1.14.714.10.0-3.70.2
Epididymis fat weight1.94.46.62.40.92.6
Glucose2.74.25.12.12.31.8
Heart weight0.91.31.81.30.71.3
Left kidney weight0.82.43.91.8-0.22.0
Right kidney weight0.41.01.51.2-0.41.2
Tail length0.62.02.7-1.5-1.6-1.0
Length with tail0.72.67.7-0.4-2.80.0
Length without tail0.51.13.00.3-1.70.5
Liver weight, left0.40.61.30.51.20.5
Liver weight, right0.10.10.30.30.5-0.2
Parametrial fat weight3.87.410.03.11.63.2
Retroperitoneal fat weight4.414.418.44.12.94.3
Intraocular pressure0.30.40.7-0.8-0.1-0.7
Extensor digitorum longus weight2.610.327.0-1.6-5.2-1.2
Soleus weight1.44.09.01.33.01.1
Tibialis anterior weight5.418.635.3-3.3-5.9-3.0
Tibia length0.41.03.0-0.0-1.7-0.1
Number of licking bursts0.20.30.50.5-0.20.7
Food consumed during 24 hour testing period0.20.30.6-0.10.8-0.4
Times rat made contact with spout0.80.91.4-1.2-0.4-1.0
Mean time between licks in bursts0.81.11.3-1.1-1.1-0.9
Mean num. licks in bursts1.01.22.0-1.30.1-1.4
Std. dev. time between licks in bursts0.20.20.30.40.60.4
Water consumed over 24 hours0.10.10.3-0.3-0.50.1
Indifference point 0 sec0.20.30.7-0.3-0.8-0.3
Indifference point AUC1.31.51.9-1.0-1.4-1.2
Indifference point function ln k2.53.53.61.91.91.8
Indifference point function log k2.53.53.61.91.91.8
Delay discounting total patch changes 0 sec0.20.30.6-0.5-0.8-0.4
Delay discounting total patch changes 12 sec4.25.69.0-2.1-3.0-1.8
Delay discounting total patch changes 18 sec0.70.91.4-1.0-0.6-1.2
Delay discounting total patch changes 24 sec2.83.59.3-0.9-3.1-0.6
Delay discounting total patch changes 6 sec0.20.31.00.0-1.00.1
Delay discounting time to switch 0 sec0.20.30.40.6-0.60.5
Delay discounting water rate 0 sec0.20.31.0-0.01.00.0
Delay discounting water rate 12 sec0.71.12.10.71.40.8
Delay discounting water rate 18 sec0.81.11.31.01.11.1
Delay discounting water rate 24 sec0.60.81.60.51.20.8
Delay discounting water rate 6 sec0.50.71.40.51.20.8
Locomotor activity0.30.41.3-0.11.20.0
Locomotor testing distance0.30.51.40.11.2-0.0
Locomotor testing rearing0.40.61.6-0.21.3-0.5
Light reinforcement 10.20.50.7-0.30.7-0.9
Light reinforcement 21.11.42.21.50.81.2
Reaction time number correct0.60.81.4-0.9-0.5-1.2
Reaction time mean minus median1.01.32.1-1.2-0.7-1.4
Reaction time mean minus median AUC2.12.74.6-1.8-0.5-2.1
Reaction time num false alarms0.10.10.1-0.30.40.0
Reaction time num false alarms AUC0.20.20.6-0.8-0.1-0.3
Reaction time trials correct on left0.60.81.4-0.9-0.5-1.2
Reaction time trials on left0.71.01.7-1.0-0.5-1.3
Reaction time mean0.70.91.8-0.9-0.0-1.4
Reaction time mean AUC0.50.71.5-0.70.2-1.2
Median of all reaction times0.30.40.8-0.5-0.2-0.9
Reaction time omissions0.50.71.1-1.1-0.3-1.0
Reaction time false alarm rate0.10.20.40.20.30.6
Reaction time premature initiation rate1.31.73.80.6-1.91.0
Reaction time premature initiations1.21.85.1-0.5-2.3-0.1
Std. dev. reaction times1.11.52.7-1.40.0-1.6
Reaction time trials completed0.71.01.7-1.0-0.5-1.3
Reaction time trials AUC0.50.81.4-0.9-0.4-1.2
Social response proportion0.20.30.40.50.40.6
Social responses0.10.10.3-0.50.3-0.2
Social time1.01.32.1-1.40.0-1.4
Conditioned locomotion0.30.41.0-0.4-1.0-0.3
Cocaine response after cond. corrected0.10.10.2-0.20.2-0.4
Cocaine response after cond. not corrected0.20.20.4-0.10.4-0.6
Cocaine response before conditioning0.20.30.7-0.30.2-0.8
Saline control response1.72.22.8-1.4-1.7-1.4
Condit. Reinf. active minus inactive responses0.30.40.9-0.40.4-0.9
Condit. Reinf. active-inactive response ratio0.10.10.30.6-0.00.3
Condit. Reinf. active responses0.20.30.8-0.40.1-0.9
Condit. Reinf. inactive responses0.30.40.6-0.50.6-0.8
Condit. Reinf. lever presses0.30.41.0-0.1-1.0-0.4
Condit. Reinf. lever reinforcers received0.50.71.5-0.8-0.3-1.2
Pavlov. Cond. lever latency0.20.30.9-0.20.90.1
Pavlov. Cond. magazine entry latency3.74.36.7-1.6-2.6-1.9
Pavlov. Cond. change in total contacts0.91.31.8-0.7-1.3-1.3
Pavlov. Cond. index score1.62.14.5-0.8-2.1-1.2
Pavlov. Cond. latency score1.41.74.1-0.5-2.0-0.9
Pavlov. Cond. lever contacts0.81.11.6-0.8-1.0-1.3
Pavlov. Cond. magazine entry number5.16.211.71.73.42.0
Pavlov. Cond. intertrial magazine entries0.91.23.10.51.80.4
Pavlov. Cond. lever-magazine prob. diff.2.02.54.9-0.9-2.2-1.4
Pavlov. Cond. response bias1.52.03.0-1.0-1.7-1.4
Conditioned reinforcement - actives0.60.61.80.01.3-0.3
Conditioned reinforcement - inactives0.60.71.01.00.80.7
Conditioned locomotion1.82.22.41.51.41.5
Intermittent access intake day 1-15 change0.60.61.4-0.41.2-0.5
Intermittent access intake escalation0.50.50.7-0.50.8-0.7
Intermittent access intake escalation 20.50.51.0-0.80.1-1.0
Intermitt. access day 1 inactive lever presses2.02.23.11.81.01.6
Intermitt. access day 15 inactive lever presses1.51.62.71.7-0.11.5
Intermitt. access escalation Index1.71.52.31.40.61.5
Intermittent access day 1 total infusions4.34.87.12.70.72.6
Intermittent access day 15 total infusions3.03.43.61.91.91.7
Intermittent access terminal intake (last 3 days)1.01.11.71.30.71.1
Intermittent access total infusions2.02.23.21.80.81.6
Intermittent access day 1 locomotion3.73.75.72.30.02.4
Intermittent access day 15 total locomotion1.01.01.71.3-0.11.2
Intermittent access total locomotion3.64.06.62.60.12.3
Intermittent access standard deviation1.21.32.1-1.20.6-1.5
Cocaine induced anxiety0.50.60.9-0.7-0.6-1.0
Post-drug Anxiety1.01.11.8-0.8-0.9-1.3
Baseline Anxiety0.70.71.1-0.7-1.0-0.7
Lifetime Intake1.61.82.61.60.71.5
Incentive Sensitization - Responses0.30.30.50.70.00.6
Incentive Sensitization - Breakpoint0.60.60.91.00.10.9
Progressive ratio test 1 active lever presses1.11.11.50.91.21.0
Progressive ratio test 1 breakpoint0.90.91.60.71.30.8
Progressive ratio test 1 inactive lever presses0.40.50.50.7-0.70.7
Progressive ratio test 2 active lever presses1.61.71.91.41.31.2
Progressive ratio test 2 breakpoint2.02.22.81.41.71.3
Progressive ratio test 2 inactive lever presses1.41.62.51.60.61.4
Total sessions with >9 infusions1.92.02.91.60.91.7
Short access day 1 total inactive lever presses1.71.92.81.50.91.7
Short access day 10 total inactive lever presses1.11.22.00.91.41.0
Short access day 1 total infusions0.70.71.00.90.61.0
Short access day 10 total infusions3.03.35.12.20.32.2
Short access total infusions1.11.31.81.40.31.4
Short access day 1 locomotion0.50.50.70.7-0.60.8
Short access day 10 total locomotion1.41.62.41.5-0.41.5
Short access total locomotion1.41.51.91.4-0.81.3
Compulsive drug intake2.42.43.4-1.8-1.0-1.7
One hour access (0.3 mA shock)2.83.33.71.81.91.7
One hour access (shock baseline)3.64.25.62.02.41.8
Number of responses in last shaping day0.20.20.2-0.5-0.3-0.4
Context. condit. distance diff. score0.10.10.10.30.00.4
Locomotion velocity, session 10.50.61.2-0.7-0.1-1.1
Locomotion distance, session 10.70.91.3-0.7-1.0-1.1
Locomotion velocity, session 21.31.53.7-0.6-1.9-0.6
Locomotion distance, session 20.71.01.1-0.9-1.0-1.0
Locomotion velocity, session 31.21.41.91.4-0.71.4
Locomotion distance, session 30.30.40.60.60.30.8
Stereotopy head waving bouts, day 30.60.71.31.10.00.9
Stereotopy head waving duration, day 30.40.50.80.8-0.30.9
Locomotion velocity, session 70.60.61.10.90.01.0
Locomotion distance, session 70.40.61.00.80.21.0
Stereotopy head waving bouts, day 70.10.10.30.0-0.5-0.1
Stereotopy head waving duration, day 70.60.82.1-0.3-1.4-0.3
Locomotion velocity, session 80.10.10.2-0.40.1-0.1
Locomotion distance, session 80.10.10.20.4-0.10.3
Degree of sensitization distance0.20.20.30.6-0.30.4
Degree of sensitization stereotypy0.60.61.3-0.5-1.1-0.6
Condit. Reinf. active minus inactive responses1.82.03.5-1.2-1.0-1.9
Condit. Reinf. active-inactive response ratio3.23.46.0-1.9-0.8-2.4
Condit. Reinf. active responses0.81.01.4-0.6-1.0-1.2
Condit. Reinf. inactive responses0.50.61.01.0-0.00.9
Incentive salience index mean0.60.71.2-0.4-0.8-1.1
Condit. Reinf. lever presses0.20.30.70.8-0.30.5
Time in familiar zone, hab. session 10.00.00.00.0-0.1-0.1
Time in novel zone, hab. session 10.50.51.40.11.20.1
Total zone transitions, hab. session 10.50.70.9-0.9-0.7-0.9
Total locomotion distance, hab. session 10.00.00.10.3-0.20.1
Locomotion velocity, hab. session 10.20.30.6-0.2-0.7-0.4
Time in familiar zone, hab. session 20.40.41.1-0.21.0-0.4
Time in novel zone, hab. session 20.20.30.80.0-0.90.0
Total zone transitions, hab. session 20.70.91.4-0.8-0.8-1.2
Total locomotion distance, hab. session 20.10.20.4-0.2-0.3-0.6
Locomotion velocity, hab. session 20.00.00.10.1-0.2-0.3
Novel to familiar place preference ratio0.80.92.40.0-1.50.5
Novelty place preference0.70.71.60.2-1.30.7
Time in novel zone, NPP test0.80.82.20.0-1.50.5
Total zone transitions, NPP test1.31.92.3-1.4-1.2-1.5
Total locomotion distance, NPP test0.10.20.3-0.4-0.3-0.5
Locomotion velocity, NPP test0.10.10.1-0.3-0.0-0.4
Pavlov. Cond. lever latency0.10.10.2-0.20.50.1
Pavlov. Cond. magazine entry latency0.20.20.60.2-0.8-0.2
Pavlov. Cond. change in total contacts0.10.10.3-0.1-0.2-0.5
Pavlov. Cond. index score0.10.10.2-0.1-0.3-0.5
Pavlov. Cond. latency score0.00.00.10.1-0.1-0.3
Pavlov. Cond. lever contacts0.10.10.20.40.20.1
Pavlov. Cond. magazine entry number0.40.50.70.60.70.9
Pavlov. Cond. intertrial magazine entries0.60.71.1-1.00.0-1.1
Pavlov. Cond. lever-magazine prob. diff.0.20.30.4-0.3-0.5-0.6
Pavlov. Cond. response bias0.20.20.4-0.2-0.6-0.5
Bone: apparent density0.20.40.60.8-0.10.7
Bone surface0.30.60.80.8-0.90.6
Bone volume0.30.61.01.0-0.30.8
Bone: connectivity density0.30.41.10.3-1.00.2
Bone: cortical apparent density0.70.91.0-1.0-0.8-1.0
Bone: cortical area0.00.10.20.1-0.4-0.1
Bone: cortical porosity0.20.30.5-0.7-0.2-0.5
Bone: cortical porosity0.60.71.1-1.1-0.6-0.7
Bone: cortical thickness2.33.74.3-2.1-1.7-2.0
Bone: cortical thickness0.40.40.7-0.9-0.5-0.6
Bone: cortical tissue density0.81.11.3-1.1-0.9-1.1
Bone: elastic displacement0.70.80.9-0.90.8-0.9
Bone: elastic work1.11.52.1-1.5-0.8-1.3
Bone: endosteal estimation3.26.99.73.11.72.9
Bone: endosteal perimeter4.48.912.53.52.03.2
Bone: final force0.40.71.6-0.3-1.3-0.5
Bone: final moment0.40.61.4-0.3-1.2-0.5
Bone: marrow area3.47.410.23.21.83.0
Bone: maximum diameter0.40.71.21.1-0.11.0
Bone: maximum force0.51.02.20.7-1.50.5
Bone: maximum moment0.50.82.00.6-1.40.4
Bone: minimum diameter2.44.56.82.61.32.2
Bone: periosteal estimation1.32.64.12.00.61.8
Bone: periosteal perimeter0.40.71.21.10.50.8
Bone: post-yield work4.15.69.13.00.92.6
Bone: stiffness0.20.30.30.6-0.60.4
Bone: tissue strength0.30.30.80.30.90.2
Bone: trabecular number0.30.40.50.7-0.70.6
Bone: trabecular spacing1.21.52.4-1.40.5-1.5
Bone: trabecular thickness0.70.91.01.00.81.0
Bone: trabecular tissue density1.42.05.00.72.20.7
Breakpoint value in progressive ratio session3.64.04.5-2.0-1.8-2.1
Distance traveled before self-admin1.11.21.9-0.8-1.4-1.0
Distance traveled after self-admin0.10.10.2-0.2-0.4-0.1
Delta time in closed arm before/after self-admin1.81.73.8-1.0-1.9-0.6
Delta time in open arm before/after self-admin1.51.41.7-1.0-1.2-1.3
Diff in mean of infusions in LGA sessions3.13.54.0-2.0-1.7-1.9
Extinction: sum of active levers before priming1.71.73.5-0.9-1.9-0.8
Active lever presses in extinction session 62.62.53.1-1.5-1.5-1.7
Delta distance traveled before/after self-admin0.30.40.70.30.80.5
Delta ambulatory time before/after self-admin0.30.30.90.11.00.2
Time in closed arm before self-admin0.10.10.30.50.30.2
Time in closed arm after self-admin0.10.10.20.30.40.4
Time in open arm before self-admin0.50.51.30.21.10.5
Time in open arm after self-admin0.60.61.1-1.1-0.1-0.9
Sum of active levers in priming session hrs 5-61.51.52.1-1.3-0.9-1.5
Time to tail flick, vehicle, before self-admin0.70.70.70.9-0.80.8
Time to tail flick, vehicle, after self-admin0.30.30.90.1-0.90.0
Time to tail flick, test, before self-admin1.21.12.11.1-0.21.4
Time to tail flick, test, after self-admin0.10.10.3-0.10.5-0.1
Delta time to tail flick, vehicle, before/after SA0.20.20.3-0.5-0.1-0.5
Delta time to tail flick, test, before/after SA2.22.03.4-1.6-0.1-1.8
Ambulatory time before self-admin1.01.01.4-0.9-1.2-1.0
Ambulatory time after self-admin0.20.20.30.5-0.20.5
Total heroin consumption4.55.46.1-2.5-2.2-2.2
Area under the delay curve0.70.81.21.10.01.1
Delay disc. indifference point, 0s delay1.21.31.91.40.11.4
Delay disc. indifference point, 16s delay0.20.20.40.6-0.10.3
Delay disc. indifference point, 2s delay1.51.62.71.60.71.3
Delay disc. indifference point, 24s delay0.10.10.20.5-0.00.3
Delay disc. indifference point, 4s delay1.21.22.11.2-0.41.5
Delay disc. indifference point, 8s delay0.80.91.51.00.51.2
Delay discount exponential model param0.80.91.3-1.1-0.1-1.2
Delay discount hyperbolic model param0.91.01.5-1.2-0.1-1.2
Fecal boli incidents, locomotor time 10.50.51.3-0.50.0-1.1
Change in fecal boli incidents, locomotor task2.52.43.21.61.21.8
Time >=10cm from walls, locomotor time 11.51.52.01.41.11.2
Bouts of movement, locomotor time 15.35.88.0-2.7-1.4-2.8
Total resting periods, locomotor time 13.53.95.5-2.2-1.2-2.4
Rest time, locomotor task time 10.20.20.40.10.60.3
Distance moved, locomotor task time 10.10.10.20.5-0.10.3
Vertical activity count, locomotor time 11.01.01.90.91.40.7
Time >=10cm from walls, locomotor time 20.10.10.3-0.10.5-0.2
Bouts of movement, locomotor time 24.85.15.4-2.3-2.2-2.2
Total resting periods, locomotor time 24.04.34.7-2.2-2.0-2.1
Rest time, locomotor task time 20.40.51.10.41.00.4
Distance moved, locomotor task time 20.10.10.2-0.5-0.1-0.1
Vertical activity count, locomotor time 20.30.40.6-0.50.8-0.4
Weight adjusted by age2.73.04.2-1.3-2.1-1.7
Seeking ratio, delayed vs. immediate footshock0.40.40.90.6-0.31.0
Locomotion in novel chamber2.22.73.31.71.81.4
Locomotion in novel chamber post-restriction0.50.51.6-0.11.30.1
Progressive ratio0.20.20.30.6-0.00.5
Food seeking constrained by brief footshock0.00.10.1-0.20.3-0.2
Seeking ratio, punishment vs. effort0.10.10.2-0.40.1-0.4
Run reversals in cocaine runway, females0.90.91.51.0-0.51.2
Run reversals in cocaine runway, males0.80.81.60.61.30.6
Latency to leave start box in cocaine runway2.62.84.22.00.81.9
Latency to leave start box in cocaine runway, F0.50.50.90.9-0.00.8
Latency to leave start box in cocaine runway, M3.53.44.11.72.01.7
Cd content in liver0.70.82.30.21.5-0.2
Co content in liver0.91.12.1-0.81.5-0.6
Cu content in liver0.10.10.3-0.2-0.50.0
Fe content in liver0.00.00.1-0.0-0.30.1
K content in liver0.60.60.80.9-0.70.7
Mg content in liver0.30.30.70.8-0.20.3
Mn content in liver0.50.61.7-0.0-1.30.2
Na content in liver0.30.30.6-0.4-0.3-0.8
Rb content in liver1.11.42.11.11.40.9
Se content in liver0.40.40.90.3-0.90.6
Sr content in liver5.55.07.4-2.0-2.7-1.9
Zn content in liver3.33.64.9-1.5-2.2-1.9