Tnrc6b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000024907 0.05 0.03 6.1e-04 0.01 0.01 0.01 0.01 4.3e-02 4.1e-02 8.3e-03 2.4e-02
2 Brain gene expression ENSRNOG00000024907 0.09 0.06 1.4e-04 0.06 0.05 0.05 0.05 4.3e-06 1.1e-05 3.5e-05 1.2e-05
3 LHb alternative polyA ENSRNOT00000091270 0.16 0.1 2.7e-03 0.04 0.06 0.07 0.05 3.6e-02 1.7e-02 1.0e-02 2.2e-02
4 PL gene expression ENSRNOG00000024907 0.04 0.03 2.9e-03 0.02 0.02 0.01 0.01 1.2e-02 6.0e-03 7.5e-02 2.9e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.51.74.4-2.1-0.3-0.6-1.3
BMI without tail0.10.30.8-0.10.9-0.60.1
Body weight0.93.89.5-3.1-1.1-0.8-2.0
Epididymis fat weight1.53.48.8-3.0-0.3-2.1-0.8
Glucose0.10.20.50.50.70.00.0
Heart weight0.60.92.2-1.5-0.0-0.1-1.1
Left kidney weight4.914.036.5-6.0-2.5-1.6-3.2
Right kidney weight6.017.241.3-6.4-3.2-0.8-4.1
Tail length0.10.40.60.50.8-0.70.7
Length with tail0.20.82.1-1.5-0.6-0.6-0.7
Length without tail1.12.34.5-2.1-1.7-0.0-1.5
Liver weight, left0.81.33.7-0.90.6-1.90.4
Liver weight, right2.74.612.5-1.41.5-3.51.2
Parametrial fat weight0.10.20.3-0.6-0.1-0.5-0.1
Retroperitoneal fat weight1.96.216.3-4.0-0.7-2.5-1.4
Intraocular pressure0.30.40.8-0.9-0.7-0.5-0.3
Extensor digitorum longus weight0.20.81.51.01.20.20.8
Soleus weight0.30.92.20.7-1.01.5-0.2
Tibialis anterior weight0.31.23.21.2-0.01.80.1
Tibia length1.02.83.8-1.9-1.90.7-1.8
Number of licking bursts0.50.61.81.3-0.00.50.6
Food consumed during 24 hour testing period2.22.63.9-2.0-1.50.7-1.9
Times rat made contact with spout0.80.91.5-0.6-1.21.1-0.9
Mean time between licks in bursts0.60.81.31.11.1-0.10.9
Mean num. licks in bursts1.01.23.2-1.8-0.7-0.2-0.9
Std. dev. time between licks in bursts0.70.81.71.3-0.41.1-0.3
Water consumed over 24 hours0.91.11.8-0.8-1.30.8-1.1
Indifference point 0 sec0.10.20.40.50.10.6-0.1
Indifference point AUC1.41.63.30.2-1.71.8-0.5
Indifference point function ln k1.31.94.5-1.01.4-2.10.4
Indifference point function log k1.31.94.5-1.01.4-2.10.4
Delay discounting total patch changes 0 sec0.10.20.50.60.10.7-0.1
Delay discounting total patch changes 12 sec0.50.61.0-0.2-0.91.0-0.7
Delay discounting total patch changes 18 sec1.72.24.3-0.2-1.52.1-1.5
Delay discounting total patch changes 24 sec0.40.51.30.5-0.71.1-0.3
Delay discounting total patch changes 6 sec1.92.96.00.2-1.82.5-1.5
Delay discounting time to switch 0 sec0.10.10.3-0.20.5-0.3-0.4
Delay discounting water rate 0 sec0.10.20.60.2-0.30.8-0.2
Delay discounting water rate 12 sec0.60.91.31.11.0-0.50.9
Delay discounting water rate 18 sec0.40.61.21.1-0.21.00.1
Delay discounting water rate 24 sec0.00.10.2-0.10.3-0.40.0
Delay discounting water rate 6 sec1.62.43.61.81.5-0.81.9
Locomotor activity0.50.81.9-1.4-0.2-0.7-0.8
Locomotor testing distance0.20.30.40.50.6-0.60.5
Locomotor testing rearing0.30.51.1-1.1-0.0-0.9-0.4
Light reinforcement 10.00.10.10.3-0.10.3-0.1
Light reinforcement 21.01.33.2-0.71.1-1.80.7
Reaction time number correct1.21.73.21.20.9-1.11.8
Reaction time mean minus median0.10.10.30.10.5-0.50.2
Reaction time mean minus median AUC0.40.61.2-0.50.8-1.10.2
Reaction time num false alarms0.20.30.50.30.7-0.70.5
Reaction time num false alarms AUC0.40.50.70.60.8-0.70.8
Reaction time trials correct on left1.21.73.21.20.9-1.11.8
Reaction time trials on left1.31.83.41.31.0-1.21.9
Reaction time mean0.30.40.90.61.0-0.60.4
Reaction time mean AUC0.30.40.70.60.8-0.60.4
Median of all reaction times0.30.40.80.80.9-0.40.4
Reaction time omissions0.40.50.70.70.7-0.50.8
Reaction time false alarm rate0.10.10.2-0.10.5-0.2-0.0
Reaction time premature initiation rate0.71.01.7-0.0-0.91.2-1.3
Reaction time premature initiations0.20.20.30.3-0.50.5-0.5
Std. dev. reaction times0.20.30.6-0.10.7-0.80.1
Reaction time trials completed1.31.83.41.31.0-1.21.9
Reaction time trials AUC0.91.32.51.00.8-1.11.6
Social response proportion0.20.20.4-0.30.6-0.1-0.4
Social responses0.20.20.60.4-0.50.8-0.2
Social time0.91.12.81.70.31.20.4
Conditioned locomotion0.10.10.4-0.60.1-0.3-0.0
Cocaine response after cond. corrected0.20.20.3-0.4-0.40.4-0.5
Cocaine response after cond. not corrected0.00.00.0-0.00.20.1-0.2
Cocaine response before conditioning0.60.81.30.81.2-0.70.8
Saline control response1.41.92.51.01.5-1.41.6
Condit. Reinf. active minus inactive responses1.21.52.8-0.2-1.71.5-1.0
Condit. Reinf. active-inactive response ratio1.51.62.1-0.6-1.51.4-1.4
Condit. Reinf. active responses0.91.22.7-0.7-1.60.7-1.0
Condit. Reinf. inactive responses0.40.61.3-0.8-1.2-0.1-0.5
Condit. Reinf. lever presses0.20.20.60.6-0.10.7-0.1
Condit. Reinf. lever reinforcers received0.60.92.0-0.4-1.40.7-0.9
Pavlov. Cond. lever latency0.40.61.5-1.2-0.8-0.5-0.3
Pavlov. Cond. magazine entry latency1.41.64.01.4-0.52.0-0.4
Pavlov. Cond. change in total contacts1.42.04.10.2-1.02.0-1.7
Pavlov. Cond. index score0.71.02.01.40.11.4-0.1
Pavlov. Cond. latency score0.91.22.41.5-0.01.6-0.1
Pavlov. Cond. lever contacts0.40.61.51.20.90.30.3
Pavlov. Cond. magazine entry number0.60.81.9-1.00.4-1.40.4
Pavlov. Cond. intertrial magazine entries1.01.32.9-1.7-1.00.0-1.1
Pavlov. Cond. lever-magazine prob. diff.0.70.92.01.40.21.2-0.0
Pavlov. Cond. response bias0.40.61.11.00.11.1-0.3
Conditioned reinforcement - actives0.60.61.1-0.4-1.01.1-0.1
Conditioned reinforcement - inactives1.01.22.80.6-0.91.7-0.7
Conditioned locomotion2.42.83.7-1.5-1.91.5-1.8
Intermittent access intake day 1-15 change0.60.61.10.80.70.01.1
Intermittent access intake escalation0.50.50.90.80.7-0.00.9
Intermittent access intake escalation 20.20.20.30.60.60.20.6
Intermitt. access day 1 inactive lever presses0.60.71.2-0.4-0.70.9-1.1
Intermitt. access day 15 inactive lever presses0.91.01.4-0.3-1.21.2-1.0
Intermitt. access escalation Index0.10.10.10.40.20.10.2
Intermittent access day 1 total infusions1.41.62.4-1.0-1.51.0-1.5
Intermittent access day 15 total infusions0.50.61.1-0.0-0.91.0-0.7
Intermittent access terminal intake (last 3 days)0.20.20.4-0.1-0.50.6-0.3
Intermittent access total infusions1.21.31.9-0.7-1.31.1-1.4
Intermittent access day 1 locomotion1.01.01.6-0.9-0.90.9-1.3
Intermittent access day 15 total locomotion0.60.61.0-0.8-0.90.4-1.0
Intermittent access total locomotion1.61.82.8-1.2-1.41.0-1.7
Intermittent access standard deviation0.60.61.0-0.9-0.60.5-1.0
Cocaine induced anxiety0.80.92.1-1.5-0.4-0.3-1.1
Post-drug Anxiety0.40.40.8-0.8-0.4-0.1-0.9
Baseline Anxiety0.70.82.11.50.40.10.9
Lifetime Intake2.22.43.6-1.2-1.71.3-1.9
Incentive Sensitization - Responses0.30.30.60.70.1-0.20.7
Incentive Sensitization - Breakpoint0.10.10.30.5-0.0-0.20.5
Progressive ratio test 1 active lever presses2.32.43.1-1.0-1.81.6-1.6
Progressive ratio test 1 breakpoint1.21.21.7-0.7-1.31.2-1.1
Progressive ratio test 1 inactive lever presses0.80.81.7-0.4-0.51.3-1.1
Progressive ratio test 2 active lever presses1.01.12.0-0.1-1.41.3-0.8
Progressive ratio test 2 breakpoint1.31.42.4-0.4-1.61.4-1.1
Progressive ratio test 2 inactive lever presses0.80.92.20.6-0.81.5-0.5
Total sessions with >9 infusions2.42.63.8-1.7-1.80.9-2.0
Short access day 1 total inactive lever presses3.74.15.8-0.6-2.22.4-2.3
Short access day 10 total inactive lever presses0.00.00.1-0.1-0.20.0-0.3
Short access day 1 total infusions0.91.01.6-0.9-1.00.7-1.3
Short access day 10 total infusions2.62.94.5-2.0-1.60.8-2.1
Short access total infusions3.23.55.7-1.9-1.91.0-2.4
Short access day 1 locomotion0.30.30.5-0.2-0.30.7-0.7
Short access day 10 total locomotion0.10.10.3-0.20.60.4-0.1
Short access total locomotion1.61.62.6-1.5-0.90.8-1.6
Compulsive drug intake1.01.01.91.4-0.11.11.0
One hour access (0.3 mA shock)0.20.20.70.4-0.30.90.0
One hour access (shock baseline)0.10.10.2-0.50.1-0.3-0.4
Number of responses in last shaping day2.22.24.1-0.0-1.42.0-1.7
Context. condit. distance diff. score3.03.76.9-2.61.0-2.60.2
Locomotion velocity, session 11.11.12.5-0.0-1.61.2-0.8
Locomotion distance, session 11.51.93.51.5-1.31.90.0
Locomotion velocity, session 20.20.20.5-0.4-0.50.1-0.7
Locomotion distance, session 22.33.37.21.6-1.72.7-0.9
Locomotion velocity, session 31.01.12.8-0.20.7-1.71.1
Locomotion distance, session 31.11.22.91.20.4-0.51.7
Stereotopy head waving bouts, day 31.21.42.3-1.3-1.10.7-1.5
Stereotopy head waving duration, day 31.92.34.7-2.2-0.9-0.0-1.9
Locomotion velocity, session 70.30.30.9-0.60.1-1.00.1
Locomotion distance, session 70.50.61.2-0.3-1.10.7-0.7
Stereotopy head waving bouts, day 71.11.33.2-1.30.5-1.8-0.1
Stereotopy head waving duration, day 71.82.25.4-1.11.4-2.30.5
Locomotion velocity, session 81.21.42.8-1.7-1.10.1-1.3
Locomotion distance, session 80.40.61.4-0.70.7-1.20.4
Degree of sensitization distance2.12.14.1-1.9-0.80.5-2.0
Degree of sensitization stereotypy1.41.54.1-1.00.9-2.00.5
Condit. Reinf. active minus inactive responses0.10.20.30.4-0.60.4-0.1
Condit. Reinf. active-inactive response ratio0.10.10.4-0.3-0.1-0.70.3
Condit. Reinf. active responses0.70.82.51.60.40.40.7
Condit. Reinf. inactive responses1.82.15.52.31.20.51.2
Incentive salience index mean0.20.20.60.8-0.40.40.0
Condit. Reinf. lever presses0.30.41.31.20.10.40.1
Time in familiar zone, hab. session 11.21.12.1-0.5-1.41.2-0.9
Time in novel zone, hab. session 10.80.81.7-0.21.3-1.10.5
Total zone transitions, hab. session 11.92.76.52.50.50.22.0
Total locomotion distance, hab. session 11.72.54.72.20.8-0.52.1
Locomotion velocity, hab. session 11.42.05.12.30.4-0.01.7
Time in familiar zone, hab. session 21.01.11.70.41.0-1.21.3
Time in novel zone, hab. session 21.01.01.4-0.4-0.91.2-1.2
Total zone transitions, hab. session 21.31.73.60.9-1.51.9-0.6
Total locomotion distance, hab. session 20.81.02.31.1-0.71.5-0.3
Locomotion velocity, hab. session 21.11.53.21.5-0.81.8-0.2
Novel to familiar place preference ratio0.60.61.8-1.40.1-0.7-0.2
Novelty place preference0.90.92.4-1.60.2-1.1-0.1
Time in novel zone, NPP test1.11.13.2-1.80.0-1.1-0.2
Total zone transitions, NPP test1.62.25.92.4-0.21.01.4
Total locomotion distance, NPP test0.81.12.81.7-0.41.00.6
Locomotion velocity, NPP test1.11.54.42.1-0.00.91.0
Pavlov. Cond. lever latency0.40.51.5-1.2-0.40.1-0.5
Pavlov. Cond. magazine entry latency0.40.51.20.7-0.61.1-0.3
Pavlov. Cond. change in total contacts1.41.53.31.0-1.11.8-0.7
Pavlov. Cond. index score0.20.30.50.4-0.50.7-0.4
Pavlov. Cond. latency score0.10.10.20.5-0.20.5-0.2
Pavlov. Cond. lever contacts0.30.41.41.20.20.40.2
Pavlov. Cond. magazine entry number0.20.20.4-0.60.5-0.60.0
Pavlov. Cond. intertrial magazine entries0.91.02.41.1-0.61.6-0.3
Pavlov. Cond. lever-magazine prob. diff.0.20.20.40.6-0.40.7-0.2
Pavlov. Cond. response bias0.30.30.60.7-0.50.8-0.3
Bone: apparent density0.10.10.40.30.00.6-0.2
Bone surface0.30.61.40.2-0.91.2-0.5
Bone volume0.10.20.5-0.1-0.50.7-0.4
Bone: connectivity density0.10.20.60.0-0.30.8-0.4
Bone: cortical apparent density0.70.91.81.20.5-0.51.3
Bone: cortical area1.62.44.2-2.0-1.30.6-1.9
Bone: cortical porosity0.40.41.0-1.00.2-0.3-0.8
Bone: cortical porosity1.01.12.3-1.5-0.3-0.1-1.4
Bone: cortical thickness0.61.01.3-1.1-1.00.8-1.1
Bone: cortical thickness1.51.82.5-0.9-1.61.3-1.4
Bone: cortical tissue density0.70.91.81.10.5-0.51.3
Bone: elastic displacement0.00.00.0-0.10.1-0.10.2
Bone: elastic work1.82.34.7-2.2-0.90.5-1.9
Bone: endosteal estimation0.61.42.5-1.4-1.00.4-1.6
Bone: endosteal perimeter0.81.54.0-2.0-0.4-0.5-1.3
Bone: final force3.35.47.5-2.7-2.21.4-2.7
Bone: final moment3.65.98.3-2.7-2.41.6-2.9
Bone: marrow area0.71.52.8-1.4-1.00.5-1.7
Bone: maximum diameter2.95.310.1-3.2-1.80.5-2.8
Bone: maximum force4.88.411.7-3.3-2.81.8-3.4
Bone: maximum moment5.18.912.5-3.4-2.91.9-3.5
Bone: minimum diameter0.71.32.2-1.4-0.80.5-1.5
Bone: periosteal estimation1.42.94.8-2.2-1.40.6-2.2
Bone: periosteal perimeter2.13.58.3-2.9-1.1-0.2-2.1
Bone: post-yield work2.94.05.4-1.0-2.32.3-2.1
Bone: stiffness3.25.18.2-2.4-2.01.5-2.9
Bone: tissue strength0.20.10.4-0.6-0.40.2-0.3
Bone: trabecular number0.20.30.4-0.00.5-0.60.6
Bone: trabecular spacing2.83.64.9-1.6-2.21.6-2.2
Bone: trabecular thickness0.91.11.90.51.4-1.20.9
Bone: trabecular tissue density0.50.71.61.20.70.80.2
Breakpoint value in progressive ratio session0.10.10.20.1-0.10.5-0.4
Distance traveled before self-admin0.10.10.30.1-0.20.5-0.3
Distance traveled after self-admin2.02.23.7-0.3-1.51.9-1.6
Delta time in closed arm before/after self-admin0.70.71.4-1.2-0.9-0.1-0.7
Delta time in open arm before/after self-admin0.30.30.90.90.50.10.3
Diff in mean of infusions in LGA sessions0.80.91.5-0.4-1.21.1-0.7
Extinction: sum of active levers before priming0.40.40.70.1-0.70.8-0.5
Active lever presses in extinction session 60.20.20.3-0.1-0.40.4-0.6
Delta distance traveled before/after self-admin1.21.22.2-0.7-1.50.9-1.2
Delta ambulatory time before/after self-admin1.92.13.4-0.7-1.91.4-1.6
Time in closed arm before self-admin1.31.53.11.60.31.8-0.3
Time in closed arm after self-admin0.90.91.7-1.0-0.80.5-1.3
Time in open arm before self-admin0.90.91.7-0.40.7-1.31.1
Time in open arm after self-admin1.41.62.20.81.5-1.01.5
Sum of active levers in priming session hrs 5-60.00.00.10.30.30.10.1
Time to tail flick, vehicle, before self-admin0.30.30.5-0.1-0.70.6-0.5
Time to tail flick, vehicle, after self-admin0.70.71.81.40.6-0.20.8
Time to tail flick, test, before self-admin0.00.00.00.2-0.2-0.20.2
Time to tail flick, test, after self-admin0.70.82.01.40.60.20.8
Delta time to tail flick, vehicle, before/after SA0.20.20.50.70.6-0.10.3
Delta time to tail flick, test, before/after SA1.71.53.41.81.10.21.2
Ambulatory time before self-admin0.10.10.30.60.20.40.3
Ambulatory time after self-admin1.21.32.90.8-1.11.7-0.8
Total heroin consumption0.60.71.1-0.4-1.01.0-0.8
Area under the delay curve1.11.22.50.5-1.31.6-0.5
Delay disc. indifference point, 0s delay0.91.01.8-1.1-0.80.5-1.3
Delay disc. indifference point, 16s delay1.21.32.91.2-0.91.7-0.0
Delay disc. indifference point, 2s delay1.01.12.0-0.3-1.41.2-0.9
Delay disc. indifference point, 24s delay1.91.94.20.1-2.01.6-0.8
Delay disc. indifference point, 4s delay1.41.52.80.1-1.31.7-1.1
Delay disc. indifference point, 8s delay0.80.81.90.9-0.81.4-0.1
Delay discount exponential model param1.11.22.5-0.61.2-1.60.4
Delay discount hyperbolic model param1.11.22.6-0.51.3-1.60.6
Fecal boli incidents, locomotor time 11.51.63.60.2-1.21.9-1.2
Change in fecal boli incidents, locomotor task0.40.40.9-0.4-0.2-0.90.6
Time >=10cm from walls, locomotor time 10.60.61.1-0.7-0.80.5-1.1
Bouts of movement, locomotor time 10.70.81.5-1.2-1.0-0.1-0.8
Total resting periods, locomotor time 10.70.81.1-1.1-1.10.2-1.0
Rest time, locomotor task time 10.91.01.4-1.1-1.00.6-1.2
Distance moved, locomotor task time 10.70.81.4-0.31.0-1.20.7
Vertical activity count, locomotor time 10.00.00.10.10.30.2-0.0
Time >=10cm from walls, locomotor time 20.20.20.50.0-0.40.7-0.5
Bouts of movement, locomotor time 20.20.20.5-0.60.0-0.7-0.2
Total resting periods, locomotor time 20.20.20.3-0.5-0.4-0.2-0.5
Rest time, locomotor task time 20.20.30.50.1-0.70.7-0.3
Distance moved, locomotor task time 20.60.71.3-0.80.8-1.10.4
Vertical activity count, locomotor time 20.20.30.6-0.8-0.20.1-0.6
Weight adjusted by age0.40.40.70.40.6-0.70.9
Seeking ratio, delayed vs. immediate footshock0.70.82.41.50.6-0.00.6
Locomotion in novel chamber4.55.68.72.42.5-1.12.9
Locomotion in novel chamber post-restriction0.60.71.00.90.9-0.51.0
Progressive ratio0.20.20.60.1-0.20.8-0.4
Food seeking constrained by brief footshock0.60.81.1-1.0-1.10.1-1.0
Seeking ratio, punishment vs. effort0.30.30.5-0.6-0.7-0.1-0.6
Run reversals in cocaine runway, females1.11.11.61.30.8-0.81.3
Run reversals in cocaine runway, males0.50.51.1-0.8-1.0-0.1-0.2
Latency to leave start box in cocaine runway0.70.81.7-0.80.8-1.30.3
Latency to leave start box in cocaine runway, F0.40.40.70.20.8-0.80.6
Latency to leave start box in cocaine runway, M1.11.02.6-1.60.2-1.2-0.1
Cd content in liver0.40.50.7-0.70.7-0.80.4
Co content in liver0.10.10.4-0.3-0.20.2-0.6
Cu content in liver1.31.64.62.10.70.80.9
Fe content in liver0.10.10.2-0.20.20.3-0.5
K content in liver0.30.30.60.70.00.70.0
Mg content in liver0.40.41.00.8-0.01.0-0.2
Mn content in liver0.30.30.8-0.20.3-0.90.7
Na content in liver0.91.02.71.70.60.60.6
Rb content in liver0.40.51.10.0-0.71.1-0.6
Se content in liver1.41.73.20.91.4-0.91.8
Sr content in liver1.21.11.91.01.1-0.51.4
Zn content in liver0.70.81.91.40.70.30.9