L3mbtl2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability ENSRNOG00000024743 0.06 0.04 1.9e-03 0.02 0.02 0.01 0.02 2.5e-03 2.0e-03 1.2e-02 2.4e-03
2 BLA intron excision ratio chr7:113189083:113190289 0.07 0.05 5.5e-03 0.01 0.04 0.02 0.02 6.3e-02 3.5e-03 2.3e-02 2.5e-02
3 Brain gene expression ENSRNOG00000024743 0.07 0.04 5.4e-03 0.04 0.01 0.02 0.04 6.6e-05 1.5e-02 3.9e-03 2.0e-04
4 Liver gene expression ENSRNOG00000024743 0.02 0.01 4.4e-03 0.01 0.01 0 0.01 2.3e-02 1.3e-02 1.9e-01 2.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.03.26.10.3-2.31.22.5
BMI without tail0.81.73.71.50.11.90.8
Body weight1.04.38.7-0.5-2.80.82.9
Epididymis fat weight2.04.79.5-2.0-2.4-0.33.1
Glucose1.01.53.01.70.81.5-0.2
Heart weight2.02.94.70.8-1.61.92.2
Left kidney weight7.220.739.4-3.3-6.3-1.15.6
Right kidney weight7.922.545.5-3.2-6.7-1.25.7
Tail length0.20.61.10.61.10.8-0.4
Length with tail0.20.81.2-0.9-1.1-0.11.0
Length without tail1.32.84.4-1.9-2.1-1.41.2
Liver weight, left0.40.61.7-0.7-0.70.21.3
Liver weight, right1.32.25.6-1.3-1.30.22.4
Parametrial fat weight0.10.10.2-0.3-0.40.10.4
Retroperitoneal fat weight2.58.116.0-2.0-3.5-0.44.0
Intraocular pressure0.81.11.9-1.4-0.7-1.30.4
Extensor digitorum longus weight0.31.42.11.41.21.4-0.4
Soleus weight0.30.92.0-0.6-0.0-1.2-1.4
Tibialis anterior weight0.41.22.11.01.20.4-1.5
Tibia length0.71.94.0-1.4-2.0-0.91.0
Number of licking bursts0.91.11.9-0.60.5-1.3-1.4
Food consumed during 24 hour testing period1.11.33.1-0.3-1.80.41.4
Times rat made contact with spout0.70.81.5-1.1-1.2-0.60.2
Mean time between licks in bursts0.40.60.90.90.90.5-0.6
Mean num. licks in bursts1.11.42.6-0.7-1.50.51.6
Std. dev. time between licks in bursts0.81.01.81.20.80.2-1.3
Water consumed over 24 hours0.60.71.5-0.9-1.2-0.40.4
Indifference point 0 sec0.61.02.31.50.60.9-0.6
Indifference point AUC2.12.45.3-1.7-0.2-2.3-1.3
Indifference point function ln k1.11.53.10.6-0.81.51.7
Indifference point function log k1.11.53.10.6-0.81.51.7
Delay discounting total patch changes 0 sec0.61.02.31.50.70.8-0.7
Delay discounting total patch changes 12 sec0.10.10.3-0.0-0.3-0.6-0.3
Delay discounting total patch changes 18 sec0.10.10.30.5-0.2-0.2-0.5
Delay discounting total patch changes 24 sec0.30.40.7-0.10.4-0.8-0.8
Delay discounting total patch changes 6 sec0.30.41.10.5-0.1-0.5-1.1
Delay discounting time to switch 0 sec0.91.42.71.50.51.60.8
Delay discounting water rate 0 sec0.10.20.40.40.10.1-0.7
Delay discounting water rate 12 sec0.30.40.60.70.80.3-0.7
Delay discounting water rate 18 sec0.71.02.10.81.0-0.4-1.4
Delay discounting water rate 24 sec0.10.20.40.6-0.10.60.2
Delay discounting water rate 6 sec0.71.02.10.11.3-0.6-1.4
Locomotor activity1.01.53.5-0.4-1.50.51.9
Locomotor testing distance0.00.00.0-0.10.20.1-0.2
Locomotor testing rearing0.81.22.5-0.7-1.30.41.6
Light reinforcement 10.00.00.10.0-0.2-0.10.1
Light reinforcement 20.50.71.8-0.2-0.60.61.3
Reaction time number correct0.91.31.9-0.61.3-1.1-1.4
Reaction time mean minus median0.20.30.60.4-0.00.70.6
Reaction time mean minus median AUC0.50.71.80.1-0.40.91.4
Reaction time num false alarms0.20.20.50.40.50.70.2
Reaction time num false alarms AUC0.10.10.40.10.70.3-0.2
Reaction time trials correct on left0.91.31.9-0.61.3-1.1-1.4
Reaction time trials on left1.01.42.0-0.61.4-1.1-1.4
Reaction time mean0.50.61.21.00.61.10.1
Reaction time mean AUC0.30.40.60.70.50.80.0
Median of all reaction times0.50.61.01.00.80.9-0.2
Reaction time omissions0.30.40.6-0.10.7-0.6-0.7
Reaction time false alarm rate0.30.41.00.6-0.01.00.6
Reaction time premature initiation rate0.60.81.91.40.01.0-0.2
Reaction time premature initiations0.20.30.60.80.50.3-0.7
Std. dev. reaction times0.30.40.80.3-0.30.80.9
Reaction time trials completed1.01.42.0-0.61.4-1.1-1.4
Reaction time trials AUC0.71.01.4-0.61.2-1.0-1.2
Social response proportion2.52.76.02.0-0.02.51.0
Social responses0.00.10.2-0.10.2-0.1-0.4
Social time1.01.42.80.81.40.0-1.7
Conditioned locomotion0.30.30.7-0.5-0.60.00.8
Cocaine response after cond. corrected0.00.00.1-0.1-0.2-0.30.3
Cocaine response after cond. not corrected0.10.10.20.40.10.20.3
Cocaine response before conditioning0.40.40.70.80.60.8-0.2
Saline control response0.10.20.30.00.60.50.1
Condit. Reinf. active minus inactive responses0.70.92.0-0.8-0.7-1.4-0.7
Condit. Reinf. active-inactive response ratio0.40.40.8-0.3-0.9-0.7-0.2
Condit. Reinf. active responses1.01.52.6-1.2-1.3-1.6-0.0
Condit. Reinf. inactive responses1.21.52.2-1.5-1.2-1.50.4
Condit. Reinf. lever presses0.20.30.70.40.3-0.4-0.8
Condit. Reinf. lever reinforcers received0.60.81.6-0.8-1.0-1.3-0.1
Pavlov. Cond. lever latency1.21.63.4-1.9-1.0-1.11.0
Pavlov. Cond. magazine entry latency2.12.44.01.61.60.4-2.0
Pavlov. Cond. change in total contacts0.91.23.41.8-0.01.0-0.7
Pavlov. Cond. index score1.52.02.91.71.30.6-1.7
Pavlov. Cond. latency score1.82.33.71.81.40.6-1.9
Pavlov. Cond. lever contacts1.21.73.61.91.01.2-0.9
Pavlov. Cond. magazine entry number0.91.12.3-1.1-1.0-0.21.5
Pavlov. Cond. intertrial magazine entries1.62.14.1-1.2-2.0-0.41.6
Pavlov. Cond. lever-magazine prob. diff.1.72.23.41.81.40.8-1.6
Pavlov. Cond. response bias1.01.43.21.80.81.0-1.0
Conditioned reinforcement - actives2.32.34.4-1.9-1.0-2.1-0.3
Conditioned reinforcement - inactives0.20.20.70.0-0.3-0.3-0.9
Conditioned locomotion1.72.05.1-1.1-2.3-1.01.0
Intermittent access intake day 1-15 change0.40.41.1-0.20.6-0.6-1.0
Intermittent access intake escalation0.40.41.00.10.7-0.3-1.0
Intermittent access intake escalation 20.20.20.30.30.60.1-0.5
Intermitt. access day 1 inactive lever presses0.50.60.70.9-0.80.80.5
Intermitt. access day 15 inactive lever presses0.60.61.6-0.6-1.3-0.7-0.1
Intermitt. access escalation Index0.10.10.20.5-0.30.2-0.2
Intermittent access day 1 total infusions0.80.92.0-0.8-1.4-0.50.8
Intermittent access day 15 total infusions0.20.20.4-0.4-0.4-0.7-0.5
Intermittent access terminal intake (last 3 days)0.20.30.5-0.7-0.4-0.7-0.1
Intermittent access total infusions0.30.30.8-0.4-0.9-0.30.4
Intermittent access day 1 locomotion0.30.40.80.2-0.90.30.7
Intermittent access day 15 total locomotion0.10.20.3-0.3-0.6-0.30.3
Intermittent access total locomotion0.40.41.1-0.2-1.1-0.10.7
Intermittent access standard deviation0.50.50.70.3-0.90.70.8
Cocaine induced anxiety1.11.22.70.5-0.91.01.6
Post-drug Anxiety0.50.50.60.6-0.70.70.8
Baseline Anxiety1.01.12.6-0.01.1-0.6-1.6
Lifetime Intake0.70.82.2-0.5-1.5-0.30.7
Incentive Sensitization - Responses0.60.61.1-0.50.2-0.9-1.0
Incentive Sensitization - Breakpoint0.60.61.1-0.7-0.1-1.0-0.9
Progressive ratio test 1 active lever presses0.70.71.2-0.9-1.1-0.80.4
Progressive ratio test 1 breakpoint0.70.71.0-1.0-0.9-0.90.3
Progressive ratio test 1 inactive lever presses0.50.61.00.6-0.71.00.6
Progressive ratio test 2 active lever presses1.31.43.1-1.3-0.5-1.8-0.7
Progressive ratio test 2 breakpoint0.91.02.2-1.1-0.7-1.5-0.4
Progressive ratio test 2 inactive lever presses0.30.41.1-0.20.1-0.6-1.0
Total sessions with >9 infusions1.51.74.6-0.9-2.1-0.61.0
Short access day 1 total inactive lever presses0.70.82.8-0.3-1.70.00.5
Short access day 10 total inactive lever presses0.20.20.5-0.1-0.70.00.5
Short access day 1 total infusions1.11.13.5-0.4-1.90.00.9
Short access day 10 total infusions0.80.81.7-0.0-1.30.41.2
Short access total infusions1.82.05.5-0.3-2.30.11.5
Short access day 1 locomotion0.30.30.60.5-0.60.70.5
Short access day 10 total locomotion1.21.33.11.40.11.80.5
Short access total locomotion1.31.32.50.4-1.60.91.3
Compulsive drug intake2.72.75.0-0.81.2-1.9-2.2
One hour access (0.3 mA shock)0.30.30.6-0.40.4-0.6-0.8
One hour access (shock baseline)0.20.30.50.2-0.20.70.7
Number of responses in last shaping day0.90.92.21.50.30.9-0.8
Context. condit. distance diff. score3.44.29.2-1.6-2.2-0.13.0
Locomotion velocity, session 11.51.63.7-1.4-0.4-1.9-0.7
Locomotion distance, session 12.53.26.6-0.91.2-2.0-2.6
Locomotion velocity, session 20.10.10.3-0.0-0.5-0.10.4
Locomotion distance, session 21.52.16.20.41.1-0.9-2.5
Locomotion velocity, session 30.50.61.2-1.1-0.1-1.00.2
Locomotion distance, session 32.42.74.2-1.51.1-2.1-1.7
Stereotopy head waving bouts, day 30.50.61.3-0.0-1.1-0.31.1
Stereotopy head waving duration, day 32.12.56.10.2-1.90.62.5
Locomotion velocity, session 70.40.50.8-0.9-0.3-0.90.4
Locomotion distance, session 70.40.51.0-0.9-0.1-1.0-0.4
Stereotopy head waving bouts, day 71.31.53.5-0.6-1.3-0.41.9
Stereotopy head waving duration, day 71.01.24.0-0.1-0.90.32.0
Locomotion velocity, session 81.31.53.3-0.9-1.8-0.71.2
Locomotion distance, session 80.30.51.1-0.6-0.80.11.1
Degree of sensitization distance2.72.74.80.8-1.51.72.2
Degree of sensitization stereotypy1.01.01.8-0.9-1.0-0.71.3
Condit. Reinf. active minus inactive responses0.20.20.4-0.00.0-0.5-0.6
Condit. Reinf. active-inactive response ratio0.30.30.4-0.6-0.5-0.60.3
Condit. Reinf. active responses0.81.01.80.91.20.3-1.3
Condit. Reinf. inactive responses2.12.54.21.42.11.0-1.7
Incentive salience index mean0.20.30.90.30.3-0.4-1.0
Condit. Reinf. lever presses0.40.51.00.80.70.3-1.0
Time in familiar zone, hab. session 11.31.32.9-1.3-0.7-1.7-0.3
Time in novel zone, hab. session 12.01.93.91.4-0.12.01.4
Total zone transitions, hab. session 13.34.69.6-1.02.0-2.0-3.1
Total locomotion distance, hab. session 11.72.54.3-0.91.7-1.4-2.1
Locomotion velocity, hab. session 11.72.55.2-0.61.8-1.2-2.3
Time in familiar zone, hab. session 20.10.10.1-0.30.40.10.2
Time in novel zone, hab. session 20.10.10.20.2-0.4-0.1-0.1
Total zone transitions, hab. session 21.11.53.6-0.40.3-1.4-1.9
Total locomotion distance, hab. session 20.50.61.80.40.7-0.3-1.4
Locomotion velocity, hab. session 20.81.13.10.51.0-0.3-1.8
Novel to familiar place preference ratio1.11.22.7-0.7-1.2-0.11.6
Novelty place preference1.71.73.6-1.1-1.5-0.31.9
Time in novel zone, NPP test2.12.24.4-1.2-1.7-0.42.1
Total zone transitions, NPP test3.14.59.2-1.01.6-2.3-3.0
Total locomotion distance, NPP test1.21.74.0-0.31.1-1.2-2.0
Locomotion velocity, NPP test1.62.25.2-0.11.6-1.1-2.3
Pavlov. Cond. lever latency0.50.71.2-0.7-1.0-0.21.1
Pavlov. Cond. magazine entry latency0.30.41.40.30.5-0.1-1.2
Pavlov. Cond. change in total contacts0.60.62.20.40.4-0.2-1.5
Pavlov. Cond. index score0.10.20.60.30.1-0.0-0.8
Pavlov. Cond. latency score0.10.20.40.40.20.2-0.7
Pavlov. Cond. lever contacts0.70.81.40.81.00.2-1.2
Pavlov. Cond. magazine entry number0.30.41.10.2-0.30.51.0
Pavlov. Cond. intertrial magazine entries0.60.71.60.60.8-0.3-1.3
Pavlov. Cond. lever-magazine prob. diff.0.20.31.00.10.3-0.2-1.0
Pavlov. Cond. response bias0.30.41.10.40.5-0.1-1.0
Bone: apparent density0.30.50.90.90.60.8-0.4
Bone surface0.10.20.6-0.20.2-0.4-0.7
Bone volume0.00.00.00.10.10.2-0.2
Bone: connectivity density0.10.10.20.50.30.4-0.2
Bone: cortical apparent density0.70.91.8-0.40.7-1.0-1.3
Bone: cortical area1.01.53.2-0.3-1.80.41.6
Bone: cortical porosity1.21.32.30.9-0.41.51.3
Bone: cortical porosity1.61.73.20.7-0.91.51.8
Bone: cortical thickness0.20.31.0-0.1-1.00.10.3
Bone: cortical thickness0.30.41.3-0.5-1.1-0.30.2
Bone: cortical tissue density0.70.91.8-0.50.6-1.1-1.3
Bone: elastic displacement0.00.00.1-0.3-0.0-0.20.0
Bone: elastic work1.51.94.00.4-1.61.12.0
Bone: endosteal estimation0.40.82.2-0.1-0.90.31.5
Bone: endosteal perimeter1.02.05.5-0.3-1.50.52.3
Bone: final force1.11.84.7-0.5-2.2-0.11.5
Bone: final moment1.21.95.1-0.5-2.3-0.11.5
Bone: marrow area0.40.92.4-0.1-1.00.41.5
Bone: maximum diameter2.44.48.6-0.5-2.90.42.9
Bone: maximum force1.73.07.5-0.6-2.70.02.1
Bone: maximum moment1.93.38.3-0.6-2.90.12.2
Bone: minimum diameter0.40.71.8-0.0-0.90.51.3
Bone: periosteal estimation0.91.84.1-0.1-1.70.62.0
Bone: periosteal perimeter2.23.68.4-0.5-2.30.62.9
Bone: post-yield work0.20.31.2-0.1-1.1-0.10.2
Bone: stiffness1.22.04.10.1-2.00.71.8
Bone: tissue strength0.10.10.2-0.1-0.5-0.10.3
Bone: trabecular number0.00.00.1-0.20.10.20.2
Bone: trabecular spacing0.91.23.0-0.7-1.7-0.80.9
Bone: trabecular thickness0.81.02.11.10.81.40.1
Bone: trabecular tissue density1.72.44.32.11.51.4-1.1
Breakpoint value in progressive ratio session0.50.51.21.00.11.10.0
Distance traveled before self-admin0.10.10.20.3-0.10.4-0.1
Distance traveled after self-admin0.30.30.70.6-0.90.1-0.2
Delta time in closed arm before/after self-admin1.51.42.4-1.3-1.6-1.10.7
Delta time in open arm before/after self-admin0.40.40.80.60.90.7-0.2
Diff in mean of infusions in LGA sessions0.30.30.7-0.4-0.0-0.9-0.7
Extinction: sum of active levers before priming0.10.10.2-0.1-0.1-0.4-0.2
Active lever presses in extinction session 60.10.10.20.4-0.30.30.4
Delta distance traveled before/after self-admin0.60.71.2-0.6-1.1-1.10.0
Delta ambulatory time before/after self-admin0.70.81.5-0.6-1.2-1.10.0
Time in closed arm before self-admin6.17.012.13.52.52.6-1.6
Time in closed arm after self-admin0.50.50.80.6-0.70.70.9
Time in open arm before self-admin0.70.71.7-1.30.0-1.10.1
Time in open arm after self-admin0.30.41.20.11.10.4-0.2
Sum of active levers in priming session hrs 5-60.30.30.50.70.30.70.2
Time to tail flick, vehicle, before self-admin0.20.20.7-0.4-0.0-0.8-0.2
Time to tail flick, vehicle, after self-admin0.60.72.10.21.40.0-0.8
Time to tail flick, test, before self-admin0.50.51.2-1.10.0-0.80.0
Time to tail flick, test, after self-admin0.70.81.40.61.20.4-1.1
Delta time to tail flick, vehicle, before/after SA0.50.51.10.80.61.00.0
Delta time to tail flick, test, before/after SA2.01.82.51.41.60.7-1.6
Ambulatory time before self-admin0.10.10.3-0.10.00.0-0.5
Ambulatory time after self-admin0.50.51.60.4-0.0-0.5-1.3
Total heroin consumption0.20.30.6-0.3-0.5-0.8-0.1
Area under the delay curve0.80.91.7-0.90.0-1.3-1.0
Delay disc. indifference point, 0s delay1.21.32.00.8-0.81.41.4
Delay disc. indifference point, 16s delay1.51.53.3-0.41.0-1.2-1.8
Delay disc. indifference point, 2s delay0.40.40.7-0.8-0.6-0.8-0.1
Delay disc. indifference point, 24s delay3.63.58.0-2.1-0.4-2.8-1.1
Delay disc. indifference point, 4s delay0.20.20.4-0.3-0.5-0.6-0.6
Delay disc. indifference point, 8s delay1.01.01.8-0.70.6-1.2-1.3
Delay discount exponential model param1.11.12.21.0-0.11.51.1
Delay discount hyperbolic model param0.90.91.81.00.11.30.9
Fecal boli incidents, locomotor time 10.20.20.40.30.3-0.3-0.6
Change in fecal boli incidents, locomotor task2.42.24.1-2.0-0.9-2.0-0.1
Time >=10cm from walls, locomotor time 10.10.10.30.2-0.50.20.6
Bouts of movement, locomotor time 10.70.71.3-1.1-0.6-0.90.6
Total resting periods, locomotor time 10.30.30.5-0.7-0.5-0.60.4
Rest time, locomotor task time 10.20.30.7-0.1-0.80.10.5
Distance moved, locomotor task time 10.20.30.8-0.1-0.30.40.9
Vertical activity count, locomotor time 10.20.20.30.50.20.60.2
Time >=10cm from walls, locomotor time 20.10.10.40.6-0.00.3-0.2
Bouts of movement, locomotor time 20.20.30.60.1-0.70.20.6
Total resting periods, locomotor time 20.20.20.5-0.0-0.70.00.4
Rest time, locomotor task time 20.40.40.9-0.5-0.1-0.9-0.7
Distance moved, locomotor task time 20.50.61.4-0.0-0.60.81.2
Vertical activity count, locomotor time 20.30.40.80.2-0.50.60.9
Weight adjusted by age0.20.20.5-0.6-0.1-0.7-0.1
Seeking ratio, delayed vs. immediate footshock1.71.93.01.31.70.4-1.7
Locomotion in novel chamber0.70.91.80.41.30.5-1.2
Locomotion in novel chamber post-restriction0.50.61.40.41.20.3-0.9
Progressive ratio0.30.30.70.80.50.6-0.1
Food seeking constrained by brief footshock1.11.32.8-1.0-1.7-0.31.1
Seeking ratio, punishment vs. effort0.70.91.8-1.0-1.3-0.60.6
Run reversals in cocaine runway, females0.50.50.7-0.20.9-0.6-0.9
Run reversals in cocaine runway, males2.32.24.7-2.2-0.8-1.80.2
Latency to leave start box in cocaine runway0.20.30.80.0-0.10.50.9
Latency to leave start box in cocaine runway, F0.20.20.60.50.80.4-0.2
Latency to leave start box in cocaine runway, M1.31.23.0-0.5-1.20.41.7
Cd content in liver0.40.40.8-0.5-0.7-0.10.9
Co content in liver0.20.20.60.1-0.80.20.5
Cu content in liver2.53.05.11.52.20.7-2.1
Fe content in liver0.80.92.01.10.21.40.7
K content in liver0.40.41.00.60.50.1-1.0
Mg content in liver0.80.81.41.20.60.6-1.1
Mn content in liver0.50.61.1-1.1-0.3-1.0-0.0
Na content in liver1.81.93.31.21.80.6-1.6
Rb content in liver0.00.10.1-0.1-0.2-0.3-0.3
Se content in liver0.50.61.50.11.2-0.2-1.0
Sr content in liver0.60.61.1-0.11.0-0.4-1.0
Zn content in liver0.70.81.50.61.20.2-1.1