Arhgap23

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000022771 0.08 0.06 2.1e-07 0.06 0.06 0.06 0.06 2.6e-07 7.0e-07 2.7e-07 4.6e-07
2 Adipose mRNA stability ENSRNOG00000022771 0.04 0.03 5.7e-05 0.03 0.03 0.02 0.03 3.7e-04 4.8e-04 9.2e-04 4.7e-04
3 BLA gene expression ENSRNOG00000022771 0.12 0.08 1.9e-03 -0 0.02 0.02 0.01 5.0e-01 4.7e-02 3.7e-02 1.3e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail3.912.731.1-1.82.0-5.6
BMI without tail0.40.81.9-0.50.5-1.4
Body weight5.121.723.3-4.44.8-4.7
Epididymis fat weight0.20.40.6-0.80.5-0.6
Glucose0.30.50.80.8-0.9-0.2
Heart weight2.84.04.7-2.01.8-2.2
Left kidney weight2.57.18.5-2.92.8-2.2
Right kidney weight0.92.63.4-1.51.4-1.9
Tail length1.44.24.7-2.02.02.2
Length with tail3.412.418.7-4.34.3-0.3
Length without tail3.57.79.1-3.03.0-2.2
Liver weight, left0.20.30.4-0.60.30.6
Liver weight, right0.20.30.7-0.2-0.20.9
Parametrial fat weight0.91.82.21.5-1.31.2
Retroperitoneal fat weight0.10.30.8-0.20.3-0.9
Intraocular pressure0.81.12.2-1.51.10.0
Extensor digitorum longus weight7.128.732.3-5.45.7-4.9
Soleus weight0.31.01.61.3-1.1-0.1
Tibialis anterior weight1.13.74.9-2.22.2-1.3
Tibia length1.13.14.1-1.71.6-2.0
Number of licking bursts0.40.50.60.7-0.70.8
Food consumed during 24 hour testing period0.91.11.8-1.21.3-0.1
Times rat made contact with spout0.60.70.80.8-0.80.9
Mean time between licks in bursts1.11.51.7-1.11.3-1.3
Mean num. licks in bursts0.00.00.10.1-0.10.2
Std. dev. time between licks in bursts0.60.81.8-0.40.6-1.3
Water consumed over 24 hours0.10.10.20.20.10.4
Indifference point 0 sec1.11.73.01.7-1.40.3
Indifference point AUC0.30.40.6-0.80.6-0.3
Indifference point function ln k0.00.10.10.3-0.30.1
Indifference point function log k0.00.10.10.3-0.30.1
Delay discounting total patch changes 0 sec0.71.12.01.4-1.10.0
Delay discounting total patch changes 12 sec3.14.25.92.4-2.21.3
Delay discounting total patch changes 18 sec0.30.30.50.6-0.4-0.7
Delay discounting total patch changes 24 sec0.70.91.51.2-1.10.0
Delay discounting total patch changes 6 sec0.60.91.71.3-1.0-0.0
Delay discounting time to switch 0 sec0.10.20.30.5-0.30.2
Delay discounting water rate 0 sec0.30.51.1-0.50.2-1.1
Delay discounting water rate 12 sec0.30.50.8-0.90.8-0.4
Delay discounting water rate 18 sec0.81.01.60.7-1.01.3
Delay discounting water rate 24 sec0.20.30.60.6-0.8-0.0
Delay discounting water rate 6 sec0.50.81.20.6-1.10.8
Locomotor activity0.40.61.11.0-0.9-0.1
Locomotor testing distance2.64.36.12.5-2.40.9
Locomotor testing rearing4.06.38.72.5-2.92.0
Light reinforcement 11.83.34.62.1-2.01.2
Light reinforcement 20.50.70.91.0-0.90.5
Reaction time number correct0.40.61.1-0.71.0-0.4
Reaction time mean minus median0.00.00.10.30.10.1
Reaction time mean minus median AUC0.60.81.31.1-0.70.8
Reaction time num false alarms0.91.21.40.9-1.21.2
Reaction time num false alarms AUC0.71.01.30.8-1.01.1
Reaction time trials correct on left0.40.61.1-0.71.0-0.4
Reaction time trials on left0.40.51.0-0.71.0-0.4
Reaction time mean0.10.10.10.30.0-0.4
Reaction time mean AUC0.00.10.10.20.1-0.3
Median of all reaction times0.10.20.30.6-0.4-0.2
Reaction time omissions0.60.81.11.0-1.00.7
Reaction time false alarm rate1.11.52.21.1-1.51.1
Reaction time premature initiation rate0.50.70.91.0-0.50.9
Reaction time premature initiations0.10.20.30.30.30.5
Std. dev. reaction times0.10.10.20.5-0.10.0
Reaction time trials completed0.40.51.0-0.71.0-0.4
Reaction time trials AUC0.30.40.8-0.60.9-0.2
Social response proportion0.30.30.60.5-0.20.8
Social responses0.20.20.30.5-0.40.5
Social time0.00.00.00.0-0.00.1
Conditioned locomotion0.20.20.30.5-0.4-0.5
Cocaine response after cond. corrected1.31.42.11.4-1.3-0.7
Cocaine response after cond. not corrected2.02.23.41.8-1.80.1
Cocaine response before conditioning1.82.23.90.9-1.32.0
Saline control response0.70.91.11.1-0.81.0
Condit. Reinf. active minus inactive responses0.70.91.41.2-0.90.6
Condit. Reinf. active-inactive response ratio0.20.20.50.7-0.40.1
Condit. Reinf. active responses1.21.72.21.5-1.41.0
Condit. Reinf. inactive responses2.73.43.71.9-1.91.7
Condit. Reinf. lever presses0.30.40.70.5-0.30.9
Condit. Reinf. lever reinforcers received1.21.82.21.5-1.31.2
Pavlov. Cond. lever latency0.20.20.4-0.60.50.2
Pavlov. Cond. magazine entry latency0.10.10.2-0.20.20.4
Pavlov. Cond. change in total contacts0.40.61.01.0-0.80.3
Pavlov. Cond. index score0.10.10.20.4-0.4-0.1
Pavlov. Cond. latency score0.00.10.10.3-0.3-0.0
Pavlov. Cond. lever contacts0.60.81.41.2-1.10.3
Pavlov. Cond. magazine entry number0.10.10.2-0.40.3-0.3
Pavlov. Cond. intertrial magazine entries0.91.11.8-1.31.4-0.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.10.3-0.2-0.2
Pavlov. Cond. response bias0.71.01.61.2-1.10.3
Conditioned reinforcement - actives1.81.82.61.6-1.60.5
Conditioned reinforcement - inactives2.62.93.51.7-1.51.9
Conditioned locomotion1.41.72.71.6-1.5-0.4
Intermittent access intake day 1-15 change0.30.30.50.3-0.6-0.7
Intermittent access intake escalation0.30.30.70.3-0.4-0.8
Intermittent access intake escalation 20.70.71.6-0.50.4-1.3
Intermitt. access day 1 inactive lever presses1.71.82.41.3-1.21.5
Intermitt. access day 15 inactive lever presses2.22.53.31.8-1.71.1
Intermitt. access escalation Index1.91.73.7-0.71.0-1.9
Intermittent access day 1 total infusions0.30.30.50.3-0.60.7
Intermittent access day 15 total infusions0.30.30.70.6-0.80.2
Intermittent access terminal intake (last 3 days)0.30.30.60.5-0.80.1
Intermittent access total infusions0.10.10.20.2-0.50.2
Intermittent access day 1 locomotion0.70.70.80.7-0.80.9
Intermittent access day 15 total locomotion0.50.51.10.6-1.10.3
Intermittent access total locomotion0.70.81.31.0-1.10.3
Intermittent access standard deviation0.30.30.30.4-0.6-0.6
Cocaine induced anxiety2.22.62.9-1.71.6-1.5
Post-drug Anxiety0.00.00.1-0.10.20.3
Baseline Anxiety3.53.75.02.2-1.81.7
Lifetime Intake0.10.10.10.1-0.40.3
Incentive Sensitization - Responses0.80.81.10.9-1.00.8
Incentive Sensitization - Breakpoint0.70.70.90.8-1.00.6
Progressive ratio test 1 active lever presses1.11.11.31.1-1.20.9
Progressive ratio test 1 breakpoint1.41.41.51.2-1.21.1
Progressive ratio test 1 inactive lever presses1.51.62.01.4-1.31.0
Progressive ratio test 2 active lever presses1.11.21.51.1-1.21.0
Progressive ratio test 2 breakpoint0.91.01.40.9-1.20.9
Progressive ratio test 2 inactive lever presses0.10.10.20.0-0.30.4
Total sessions with >9 infusions0.60.71.20.9-1.10.3
Short access day 1 total inactive lever presses3.84.37.91.4-1.72.8
Short access day 10 total inactive lever presses0.20.20.3-0.30.50.4
Short access day 1 total infusions0.20.20.30.3-0.50.4
Short access day 10 total infusions0.10.10.2-0.0-0.5-0.1
Short access total infusions0.00.00.0-0.1-0.1-0.1
Short access day 1 locomotion1.61.62.31.5-1.50.6
Short access day 10 total locomotion1.51.72.41.4-1.60.7
Short access total locomotion0.60.60.90.9-0.90.1
Compulsive drug intake1.31.33.70.10.11.9
One hour access (0.3 mA shock)0.40.40.90.3-0.50.9
One hour access (shock baseline)0.40.40.60.5-0.7-0.6
Number of responses in last shaping day0.10.10.2-0.40.3-0.4
Context. condit. distance diff. score0.50.60.7-0.90.6-0.8
Locomotion velocity, session 11.01.11.3-0.91.1-1.1
Locomotion distance, session 12.53.25.5-1.92.3-0.6
Locomotion velocity, session 20.60.71.0-1.01.0-0.1
Locomotion distance, session 20.81.11.9-1.21.40.3
Locomotion velocity, session 30.10.10.2-0.10.4-0.2
Locomotion distance, session 30.60.60.8-0.90.90.6
Stereotopy head waving bouts, day 32.53.04.82.0-2.20.2
Stereotopy head waving duration, day 30.60.70.91.0-0.9-0.4
Locomotion velocity, session 70.20.20.4-0.50.60.2
Locomotion distance, session 70.60.72.2-0.30.01.5
Stereotopy head waving bouts, day 70.40.50.80.8-0.90.1
Stereotopy head waving duration, day 70.10.10.10.3-0.3-0.2
Locomotion velocity, session 86.07.18.0-2.82.8-2.4
Locomotion distance, session 81.32.02.8-1.71.7-0.7
Degree of sensitization distance0.10.10.1-0.30.2-0.2
Degree of sensitization stereotypy1.11.21.51.1-1.21.0
Condit. Reinf. active minus inactive responses0.40.50.70.5-0.70.8
Condit. Reinf. active-inactive response ratio0.70.81.10.9-1.10.7
Condit. Reinf. active responses0.50.60.80.7-0.80.9
Condit. Reinf. inactive responses0.50.60.90.8-0.60.9
Incentive salience index mean1.31.62.11.2-1.21.5
Condit. Reinf. lever presses1.41.83.11.2-1.01.8
Time in familiar zone, hab. session 10.90.81.30.6-0.91.2
Time in novel zone, hab. session 10.60.60.91.0-0.7-0.5
Total zone transitions, hab. session 11.72.33.7-1.71.90.6
Total locomotion distance, hab. session 10.40.61.7-0.00.11.3
Locomotion velocity, hab. session 10.50.70.8-0.70.90.9
Time in familiar zone, hab. session 20.50.50.70.8-0.90.4
Time in novel zone, hab. session 20.00.00.00.2-0.10.1
Total zone transitions, hab. session 20.40.50.7-0.80.90.5
Total locomotion distance, hab. session 20.00.00.0-0.00.20.1
Locomotion velocity, hab. session 20.10.10.2-0.30.4-0.1
Novel to familiar place preference ratio1.41.42.4-1.61.3-0.6
Novelty place preference0.80.81.6-1.30.9-0.3
Time in novel zone, NPP test0.20.30.6-0.70.40.1
Total zone transitions, NPP test0.40.61.0-0.50.81.0
Total locomotion distance, NPP test0.20.20.70.20.00.8
Locomotion velocity, NPP test0.20.30.5-0.40.70.5
Pavlov. Cond. lever latency3.74.76.4-2.01.9-2.5
Pavlov. Cond. magazine entry latency8.410.913.33.4-3.62.8
Pavlov. Cond. change in total contacts7.27.69.62.4-2.73.1
Pavlov. Cond. index score7.910.110.83.2-3.33.1
Pavlov. Cond. latency score6.28.08.12.8-2.82.8
Pavlov. Cond. lever contacts3.33.95.71.8-1.72.4
Pavlov. Cond. magazine entry number10.613.315.3-3.73.9-3.3
Pavlov. Cond. intertrial magazine entries1.21.42.1-1.31.5-0.6
Pavlov. Cond. lever-magazine prob. diff.8.811.112.13.3-3.53.2
Pavlov. Cond. response bias8.810.811.73.3-3.43.2
Bone: apparent density1.01.72.61.6-1.60.2
Bone surface0.10.30.6-0.30.3-0.7
Bone volume0.20.30.80.1-0.0-0.9
Bone: connectivity density1.93.03.81.9-1.91.3
Bone: cortical apparent density6.68.615.12.2-2.43.9
Bone: cortical area0.00.10.10.3-0.30.2
Bone: cortical porosity0.60.71.21.1-0.90.3
Bone: cortical porosity1.01.11.71.3-1.10.5
Bone: cortical thickness0.91.51.91.1-1.21.4
Bone: cortical thickness5.05.86.82.2-2.42.6
Bone: cortical tissue density6.78.715.52.2-2.43.9
Bone: elastic displacement0.00.00.10.3-0.1-0.1
Bone: elastic work0.00.00.0-0.10.2-0.1
Bone: endosteal estimation1.83.94.3-1.91.9-2.1
Bone: endosteal perimeter1.73.44.2-1.71.8-2.0
Bone: final force0.81.21.81.2-1.30.7
Bone: final moment0.61.01.41.2-1.20.5
Bone: marrow area1.73.63.7-1.91.9-1.9
Bone: maximum diameter0.10.10.30.00.0-0.6
Bone: maximum force0.00.10.20.0-0.2-0.5
Bone: maximum moment0.10.10.3-0.0-0.1-0.6
Bone: minimum diameter0.50.91.1-1.10.9-0.9
Bone: periosteal estimation0.30.61.0-0.60.6-1.0
Bone: periosteal perimeter0.71.21.5-1.01.0-1.2
Bone: post-yield work0.91.21.4-1.21.1-1.0
Bone: stiffness0.00.00.10.1-0.2-0.0
Bone: tissue strength0.60.60.7-0.80.8-0.7
Bone: trabecular number3.35.16.82.6-2.61.4
Bone: trabecular spacing0.50.60.9-0.80.9-0.6
Bone: trabecular thickness0.20.30.8-0.00.1-0.9
Bone: trabecular tissue density0.10.10.20.2-0.10.4
Breakpoint value in progressive ratio session0.91.01.1-1.01.01.0
Distance traveled before self-admin0.10.10.40.10.00.6
Distance traveled after self-admin1.61.82.8-1.11.1-1.7
Delta time in closed arm before/after self-admin2.72.63.3-1.81.8-1.2
Delta time in open arm before/after self-admin0.10.10.20.3-0.10.5
Diff in mean of infusions in LGA sessions0.20.20.6-0.20.00.8
Extinction: sum of active levers before priming0.60.61.5-1.20.70.0
Active lever presses in extinction session 60.10.10.2-0.1-0.50.3
Delta distance traveled before/after self-admin2.32.44.8-1.21.1-2.2
Delta ambulatory time before/after self-admin1.31.43.5-0.60.6-1.9
Time in closed arm before self-admin1.31.53.21.8-1.10.1
Time in closed arm after self-admin0.70.81.4-0.40.9-1.2
Time in open arm before self-admin2.52.73.7-1.91.7-1.3
Time in open arm after self-admin0.30.30.5-0.70.6-0.1
Sum of active levers in priming session hrs 5-61.51.53.8-0.0-0.82.0
Time to tail flick, vehicle, before self-admin0.70.71.8-0.0-0.51.4
Time to tail flick, vehicle, after self-admin0.00.00.10.3-0.2-0.1
Time to tail flick, test, before self-admin0.50.50.8-0.90.7-0.5
Time to tail flick, test, after self-admin0.10.10.3-0.50.0-0.3
Delta time to tail flick, vehicle, before/after SA0.30.30.40.6-0.5-0.4
Delta time to tail flick, test, before/after SA1.11.01.10.9-1.01.0
Ambulatory time before self-admin0.10.10.1-0.20.40.2
Ambulatory time after self-admin3.63.95.7-1.81.7-2.4
Total heroin consumption0.60.71.90.0-0.51.4
Area under the delay curve0.90.91.00.9-1.01.0
Delay disc. indifference point, 0s delay1.51.62.31.2-1.11.5
Delay disc. indifference point, 16s delay0.30.30.70.6-0.80.1
Delay disc. indifference point, 2s delay2.32.53.01.7-1.61.4
Delay disc. indifference point, 24s delay0.10.10.1-0.4-0.10.2
Delay disc. indifference point, 4s delay1.11.22.80.6-0.61.7
Delay disc. indifference point, 8s delay1.01.11.11.0-1.11.1
Delay discount exponential model param0.40.50.6-0.60.7-0.8
Delay discount hyperbolic model param0.80.81.1-0.80.9-1.0
Fecal boli incidents, locomotor time 11.11.12.7-0.60.7-1.6
Change in fecal boli incidents, locomotor task0.70.71.80.2-0.51.3
Time >=10cm from walls, locomotor time 11.11.11.31.0-1.01.1
Bouts of movement, locomotor time 10.10.10.2-0.30.5-0.3
Total resting periods, locomotor time 10.30.30.3-0.40.6-0.6
Rest time, locomotor task time 10.10.10.20.50.1-0.0
Distance moved, locomotor task time 10.60.61.40.2-0.71.2
Vertical activity count, locomotor time 10.10.10.1-0.3-0.20.3
Time >=10cm from walls, locomotor time 22.32.53.01.4-1.51.7
Bouts of movement, locomotor time 20.20.20.30.5-0.60.3
Total resting periods, locomotor time 20.10.10.20.4-0.40.2
Rest time, locomotor task time 20.40.51.0-0.71.00.1
Distance moved, locomotor task time 20.00.00.0-0.20.00.1
Vertical activity count, locomotor time 20.00.00.1-0.1-0.1-0.3
Weight adjusted by age0.20.20.4-0.60.50.1
Seeking ratio, delayed vs. immediate footshock0.20.20.5-0.20.1-0.7
Locomotion in novel chamber2.63.24.41.4-1.82.1
Locomotion in novel chamber post-restriction0.40.50.91.0-0.6-0.4
Progressive ratio0.20.20.40.40.00.6
Food seeking constrained by brief footshock0.20.20.30.5-0.60.2
Seeking ratio, punishment vs. effort0.10.10.3-0.1-0.5-0.0
Run reversals in cocaine runway, females1.61.52.5-1.61.2-0.8
Run reversals in cocaine runway, males0.40.40.70.9-0.70.1
Latency to leave start box in cocaine runway3.53.96.0-1.51.8-2.4
Latency to leave start box in cocaine runway, F3.74.07.4-1.21.8-2.7
Latency to leave start box in cocaine runway, M0.60.60.9-1.00.6-0.8
Cd content in liver0.50.51.20.4-0.51.1
Co content in liver1.31.51.8-1.31.3-1.0
Cu content in liver0.60.71.3-1.01.10.1
Fe content in liver1.11.31.9-1.31.4-0.2
K content in liver0.10.10.10.3-0.3-0.0
Mg content in liver0.30.30.60.4-0.30.8
Mn content in liver0.91.12.50.5-0.61.6
Na content in liver0.20.20.30.6-0.3-0.3
Rb content in liver1.31.62.21.5-1.21.0
Se content in liver1.41.72.31.4-1.50.9
Sr content in liver0.30.20.3-0.50.40.5
Zn content in liver1.92.12.91.7-1.41.1