Zfp57

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000022730 0.11 0.06 5.4e-12 0.11 0.1 0.1 0.1 7.2e-12 1.0e-10 9.3e-11 6.2e-11
2 Eye gene expression ENSRNOG00000022730 0.54 0.17 7.6e-04 0.07 0.07 0.05 0.09 3.0e-02 2.8e-02 6.9e-02 1.8e-02
3 Liver gene expression ENSRNOG00000022730 0.04 0.02 1.4e-04 0.04 0.04 0.04 0.04 6.7e-05 7.3e-05 5.2e-05 5.8e-05
4 PL gene expression ENSRNOG00000022730 0.04 0.03 7.8e-03 0.02 0.02 0.01 0.02 1.3e-02 1.5e-02 7.3e-02 1.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.34.14.8-2.1-1.6-2.2-2.1
BMI without tail2.85.88.2-2.8-1.2-2.9-2.4
Body weight3.715.724.1-4.9-0.8-4.9-3.8
Epididymis fat weight3.89.026.7-0.7-5.2-1.0-2.8
Glucose3.96.015.51.03.91.22.5
Heart weight0.10.20.3-0.50.1-0.5-0.3
Left kidney weight1.75.07.7-2.8-0.5-2.8-2.1
Right kidney weight1.74.97.9-2.80.5-2.8-1.9
Tail length2.88.414.1-3.81.7-3.6-1.8
Length with tail2.38.514.4-3.81.2-3.7-2.1
Length without tail1.42.94.6-2.10.7-2.1-1.4
Liver weight, left0.50.82.4-0.71.5-0.70.2
Liver weight, right2.54.26.8-2.61.5-2.5-1.3
Parametrial fat weight2.03.94.3-2.0-1.7-2.1-2.1
Retroperitoneal fat weight0.30.81.1-1.0-0.5-1.1-1.0
Intraocular pressure0.60.81.11.00.40.91.1
Extensor digitorum longus weight0.20.81.70.21.30.31.1
Soleus weight1.44.213.3-0.13.60.11.9
Tibialis anterior weight0.20.71.70.7-1.30.7-0.1
Tibia length1.23.36.0-2.51.0-2.3-0.9
Number of licking bursts0.30.31.0-0.11.0-0.00.5
Food consumed during 24 hour testing period0.50.61.0-0.81.0-0.70.2
Times rat made contact with spout1.21.32.31.5-0.81.40.5
Mean time between licks in bursts0.81.12.9-0.01.70.11.2
Mean num. licks in bursts0.50.61.50.8-1.20.7-0.2
Std. dev. time between licks in bursts1.11.34.0-0.32.0-0.21.2
Water consumed over 24 hours0.20.20.7-0.10.8-0.10.2
Indifference point 0 sec0.40.61.90.1-1.40.2-0.6
Indifference point AUC2.22.64.1-2.0-0.0-2.0-1.5
Indifference point function ln k0.91.22.00.91.01.01.4
Indifference point function log k0.91.22.00.91.01.01.4
Delay discounting total patch changes 0 sec0.50.82.6-0.0-1.6-0.0-0.9
Delay discounting total patch changes 12 sec0.91.22.2-0.6-1.5-0.6-1.3
Delay discounting total patch changes 18 sec0.81.03.10.6-1.80.6-0.3
Delay discounting total patch changes 24 sec1.11.43.60.9-1.90.9-0.5
Delay discounting total patch changes 6 sec1.42.24.7-0.8-2.2-0.8-1.6
Delay discounting time to switch 0 sec0.60.92.60.7-1.60.6-0.1
Delay discounting water rate 0 sec0.20.20.3-0.60.2-0.6-0.5
Delay discounting water rate 12 sec0.00.10.20.3-0.40.1-0.2
Delay discounting water rate 18 sec0.10.10.1-0.20.3-0.3-0.4
Delay discounting water rate 24 sec0.40.50.8-0.8-0.5-0.9-0.7
Delay discounting water rate 6 sec0.10.10.20.3-0.30.1-0.4
Locomotor activity1.11.74.8-1.02.2-0.90.2
Locomotor testing distance0.40.72.30.01.50.10.6
Locomotor testing rearing0.40.71.8-0.71.3-0.60.1
Light reinforcement 10.40.71.9-0.2-1.4-0.3-0.9
Light reinforcement 21.82.43.5-1.8-0.1-1.9-1.6
Reaction time number correct0.91.33.1-0.4-1.8-0.5-1.3
Reaction time mean minus median1.92.48.0-0.22.8-0.11.2
Reaction time mean minus median AUC1.62.06.6-0.12.6-0.01.1
Reaction time num false alarms0.10.20.5-0.30.7-0.20.1
Reaction time num false alarms AUC0.20.20.8-0.30.9-0.20.2
Reaction time trials correct on left0.91.33.1-0.4-1.8-0.5-1.3
Reaction time trials on left0.91.22.8-0.4-1.7-0.5-1.3
Reaction time mean2.83.910.80.63.30.81.9
Reaction time mean AUC2.63.510.40.43.20.61.7
Median of all reaction times2.33.18.00.72.80.91.7
Reaction time omissions1.62.27.70.12.80.21.0
Reaction time false alarm rate0.71.03.3-0.11.80.10.9
Reaction time premature initiation rate0.50.70.9-0.9-0.5-0.9-1.0
Reaction time premature initiations1.42.02.9-1.1-1.6-1.2-1.7
Std. dev. reaction times2.12.99.7-0.33.1-0.01.3
Reaction time trials completed0.91.22.8-0.4-1.7-0.5-1.3
Reaction time trials AUC0.81.12.7-0.3-1.6-0.4-1.3
Social response proportion0.20.31.0-0.11.0-0.00.2
Social responses0.30.40.7-0.6-0.1-0.7-0.8
Social time1.21.55.0-0.12.2-0.01.0
Conditioned locomotion1.61.92.8-1.7-0.8-1.6-1.2
Cocaine response after cond. corrected0.20.20.30.5-0.50.50.3
Cocaine response after cond. not corrected0.20.20.5-0.70.1-0.6-0.3
Cocaine response before conditioning3.34.06.7-2.60.5-2.5-1.7
Saline control response1.52.02.8-1.1-1.7-1.1-1.6
Condit. Reinf. active minus inactive responses0.91.11.7-1.30.2-1.3-1.1
Condit. Reinf. active-inactive response ratio1.71.82.9-1.70.3-1.7-1.1
Condit. Reinf. active responses0.00.00.10.00.3-0.0-0.1
Condit. Reinf. inactive responses0.70.81.41.20.21.10.8
Condit. Reinf. lever presses0.81.11.51.20.41.21.2
Condit. Reinf. lever reinforcers received0.10.10.30.30.60.20.2
Pavlov. Cond. lever latency0.20.30.4-0.70.1-0.6-0.4
Pavlov. Cond. magazine entry latency0.30.30.6-0.80.0-0.7-0.5
Pavlov. Cond. change in total contacts0.40.61.4-0.4-1.2-0.5-0.8
Pavlov. Cond. index score0.00.00.1-0.1-0.4-0.1-0.2
Pavlov. Cond. latency score0.10.10.4-0.2-0.6-0.2-0.3
Pavlov. Cond. lever contacts0.20.30.80.5-0.90.4-0.1
Pavlov. Cond. magazine entry number0.50.61.00.70.50.71.0
Pavlov. Cond. intertrial magazine entries1.31.73.50.71.90.71.5
Pavlov. Cond. lever-magazine prob. diff.0.00.00.2-0.1-0.4-0.1-0.2
Pavlov. Cond. response bias0.00.10.10.3-0.20.3-0.1
Conditioned reinforcement - actives0.50.50.6-0.6-0.7-0.7-0.8
Conditioned reinforcement - inactives0.81.01.3-0.8-1.2-0.9-1.1
Conditioned locomotion0.10.10.2-0.4-0.2-0.4-0.3
Intermittent access intake day 1-15 change1.01.01.3-1.1-0.5-1.1-1.1
Intermittent access intake escalation0.60.60.9-0.90.3-0.9-0.6
Intermittent access intake escalation 21.01.03.6-0.31.9-0.20.5
Intermitt. access day 1 inactive lever presses1.01.12.00.71.40.71.1
Intermitt. access day 15 inactive lever presses0.20.30.4-0.60.0-0.6-0.5
Intermitt. access escalation Index1.71.62.11.40.51.51.3
Intermittent access day 1 total infusions0.30.30.90.4-0.90.3-0.0
Intermittent access day 15 total infusions0.50.61.3-0.4-1.1-0.5-0.8
Intermittent access terminal intake (last 3 days)0.80.91.5-0.7-1.2-0.7-1.0
Intermittent access total infusions0.60.61.5-0.4-1.2-0.5-0.8
Intermittent access day 1 locomotion0.10.10.2-0.4-0.2-0.4-0.3
Intermittent access day 15 total locomotion1.81.93.0-1.7-0.0-1.7-1.2
Intermittent access total locomotion1.21.42.2-1.5-0.0-1.5-1.1
Intermittent access standard deviation2.52.73.4-1.8-1.0-1.8-1.8
Cocaine induced anxiety4.24.97.11.82.71.92.4
Post-drug Anxiety1.92.13.21.11.81.21.5
Baseline Anxiety0.40.51.6-0.0-1.3-0.1-0.5
Lifetime Intake0.40.41.0-0.3-1.0-0.4-0.7
Incentive Sensitization - Responses0.50.50.80.9-0.50.80.5
Incentive Sensitization - Breakpoint0.60.60.91.0-0.40.90.6
Progressive ratio test 1 active lever presses0.30.30.7-0.3-0.9-0.4-0.6
Progressive ratio test 1 breakpoint0.30.30.8-0.1-0.9-0.2-0.5
Progressive ratio test 1 inactive lever presses0.50.51.50.5-1.20.4-0.1
Progressive ratio test 2 active lever presses0.30.41.30.3-1.10.2-0.2
Progressive ratio test 2 breakpoint0.40.51.20.6-1.10.50.0
Progressive ratio test 2 inactive lever presses0.30.30.4-0.5-0.6-0.6-0.6
Total sessions with >9 infusions0.40.40.5-0.5-0.7-0.6-0.7
Short access day 1 total inactive lever presses1.11.22.80.61.70.71.1
Short access day 10 total inactive lever presses2.22.53.51.31.91.31.7
Short access day 1 total infusions0.20.20.40.6-0.10.60.4
Short access day 10 total infusions0.30.40.6-0.4-0.8-0.5-0.6
Short access total infusions0.30.30.5-0.4-0.7-0.4-0.6
Short access day 1 locomotion1.61.72.51.60.41.61.3
Short access day 10 total locomotion0.50.51.6-0.61.2-0.50.1
Short access total locomotion0.00.00.0-0.10.2-0.10.0
Compulsive drug intake4.74.75.82.31.42.42.4
One hour access (0.3 mA shock)0.20.20.30.50.20.50.5
One hour access (shock baseline)1.61.82.6-1.6-0.4-1.6-1.4
Number of responses in last shaping day0.00.00.1-0.0-0.2-0.0-0.1
Context. condit. distance diff. score6.07.410.12.42.72.53.2
Locomotion velocity, session 10.40.41.20.31.10.40.3
Locomotion distance, session 10.60.81.31.1-0.61.10.5
Locomotion velocity, session 20.10.10.2-0.20.4-0.1-0.3
Locomotion distance, session 20.60.81.31.10.31.10.8
Locomotion velocity, session 30.10.20.4-0.0-0.5-0.1-0.7
Locomotion distance, session 31.31.42.21.50.41.51.0
Stereotopy head waving bouts, day 30.70.81.1-1.11.0-1.0-0.3
Stereotopy head waving duration, day 30.60.81.3-1.10.6-1.1-0.6
Locomotion velocity, session 72.93.24.72.20.92.21.6
Locomotion distance, session 72.12.74.52.10.32.11.3
Stereotopy head waving bouts, day 70.70.81.4-1.2-0.2-1.2-0.7
Stereotopy head waving duration, day 71.31.62.6-1.6-0.0-1.6-1.0
Locomotion velocity, session 81.41.75.8-0.22.4-0.10.9
Locomotion distance, session 83.75.57.62.12.22.22.8
Degree of sensitization distance0.10.10.30.00.50.10.2
Degree of sensitization stereotypy0.50.50.8-0.9-0.2-0.9-0.6
Condit. Reinf. active minus inactive responses0.20.20.50.30.70.30.3
Condit. Reinf. active-inactive response ratio0.30.40.5-0.6-0.4-0.6-0.7
Condit. Reinf. active responses0.40.50.60.80.60.80.6
Condit. Reinf. inactive responses1.31.62.71.6-0.01.61.0
Incentive salience index mean1.41.74.10.72.00.81.3
Condit. Reinf. lever presses3.95.27.61.72.81.82.6
Time in familiar zone, hab. session 11.61.52.71.6-0.91.50.5
Time in novel zone, hab. session 11.01.01.7-1.30.9-1.2-0.2
Total zone transitions, hab. session 10.81.21.81.3-0.11.31.1
Total locomotion distance, hab. session 10.50.81.11.0-0.51.10.8
Locomotion velocity, hab. session 10.30.50.70.8-0.70.80.4
Time in familiar zone, hab. session 20.30.30.60.8-0.20.70.2
Time in novel zone, hab. session 20.40.40.7-0.8-0.3-0.8-0.6
Total zone transitions, hab. session 20.10.10.30.3-0.60.3-0.0
Total locomotion distance, hab. session 20.81.11.71.3-0.31.30.8
Locomotion velocity, hab. session 21.01.32.01.4-0.21.41.1
Novel to familiar place preference ratio0.20.20.3-0.2-0.6-0.2-0.5
Novelty place preference0.30.30.5-0.5-0.5-0.4-0.7
Time in novel zone, NPP test0.40.40.7-0.7-0.4-0.7-0.8
Total zone transitions, NPP test1.11.62.21.40.61.51.3
Total locomotion distance, NPP test0.81.21.81.3-0.31.31.0
Locomotion velocity, NPP test1.52.23.41.8-0.21.81.4
Pavlov. Cond. lever latency1.82.35.2-0.6-2.3-0.8-1.7
Pavlov. Cond. magazine entry latency2.53.35.51.12.41.22.2
Pavlov. Cond. change in total contacts0.60.61.4-0.81.2-0.60.2
Pavlov. Cond. index score2.83.67.10.92.71.12.3
Pavlov. Cond. latency score2.43.17.10.72.70.92.1
Pavlov. Cond. lever contacts1.41.74.30.32.10.41.5
Pavlov. Cond. magazine entry number2.43.04.6-1.3-1.9-1.4-2.1
Pavlov. Cond. intertrial magazine entries0.81.03.40.4-1.80.3-0.5
Pavlov. Cond. lever-magazine prob. diff.3.03.87.01.02.61.22.3
Pavlov. Cond. response bias2.63.25.21.02.31.22.2
Bone: apparent density1.32.23.61.9-0.51.81.3
Bone surface0.00.00.1-0.10.1-0.00.3
Bone volume0.00.00.20.1-0.40.10.0
Bone: connectivity density2.74.25.92.40.32.42.2
Bone: cortical apparent density1.41.83.2-0.9-1.5-1.0-1.8
Bone: cortical area0.91.32.1-1.5-0.4-1.4-0.9
Bone: cortical porosity0.20.20.5-0.3-0.7-0.3-0.3
Bone: cortical porosity0.20.20.3-0.60.1-0.5-0.1
Bone: cortical thickness2.23.75.6-1.5-2.4-1.6-2.0
Bone: cortical thickness0.91.03.2-0.2-1.8-0.3-0.9
Bone: cortical tissue density1.21.62.8-0.9-1.3-0.9-1.7
Bone: elastic displacement0.30.40.8-0.4-0.9-0.4-0.6
Bone: elastic work0.91.11.3-1.1-0.9-1.1-1.0
Bone: endosteal estimation1.63.44.8-2.22.2-2.0-0.4
Bone: endosteal perimeter1.02.16.4-0.32.5-0.11.4
Bone: final force2.94.75.7-2.3-1.6-2.3-2.4
Bone: final moment2.33.74.5-2.1-1.3-2.1-2.1
Bone: marrow area1.53.34.7-2.22.1-2.0-0.4
Bone: maximum diameter0.51.03.1-0.51.8-0.30.8
Bone: maximum force2.44.15.0-2.2-1.5-2.2-2.1
Bone: maximum moment1.93.34.2-2.0-1.2-2.1-1.8
Bone: minimum diameter0.81.44.3-0.62.1-0.40.9
Bone: periosteal estimation1.42.85.0-2.20.9-2.1-0.9
Bone: periosteal perimeter0.61.01.6-1.31.0-1.20.2
Bone: post-yield work0.81.13.00.21.70.31.1
Bone: stiffness0.60.91.3-0.8-1.1-0.8-1.0
Bone: tissue strength1.31.32.1-1.1-0.7-1.2-1.4
Bone: trabecular number1.01.62.41.6-1.01.50.9
Bone: trabecular spacing2.63.35.3-2.30.2-2.3-1.7
Bone: trabecular thickness1.11.32.21.5-0.11.40.9
Bone: trabecular tissue density1.52.13.0-1.6-0.8-1.6-1.7
Breakpoint value in progressive ratio session0.91.01.51.20.11.21.0
Distance traveled before self-admin0.40.51.6-0.01.30.00.5
Distance traveled after self-admin0.30.30.90.11.00.10.5
Delta time in closed arm before/after self-admin0.00.00.1-0.1-0.2-0.2-0.3
Delta time in open arm before/after self-admin0.00.00.00.0-0.10.0-0.0
Diff in mean of infusions in LGA sessions2.52.84.22.10.12.01.6
Extinction: sum of active levers before priming0.80.81.41.2-0.41.10.7
Active lever presses in extinction session 60.60.61.9-0.0-1.4-0.1-0.5
Delta distance traveled before/after self-admin0.20.30.4-0.5-0.5-0.5-0.6
Delta ambulatory time before/after self-admin0.00.00.0-0.20.0-0.2-0.1
Time in closed arm before self-admin0.30.30.6-0.4-0.8-0.4-0.5
Time in closed arm after self-admin2.42.53.0-1.3-1.7-1.4-1.7
Time in open arm before self-admin0.50.61.60.31.30.40.7
Time in open arm after self-admin1.21.41.81.01.31.01.3
Sum of active levers in priming session hrs 5-60.20.20.30.6-0.20.50.3
Time to tail flick, vehicle, before self-admin0.30.30.70.20.80.20.6
Time to tail flick, vehicle, after self-admin0.60.61.30.41.20.50.9
Time to tail flick, test, before self-admin0.50.50.6-0.6-0.7-0.7-0.8
Time to tail flick, test, after self-admin0.30.30.9-0.11.0-0.10.3
Delta time to tail flick, vehicle, before/after SA0.10.10.20.40.00.40.3
Delta time to tail flick, test, before/after SA0.40.40.50.60.40.60.7
Ambulatory time before self-admin0.10.10.4-0.10.6-0.10.1
Ambulatory time after self-admin0.30.30.70.30.90.40.6
Total heroin consumption0.10.10.10.30.40.30.3
Area under the delay curve2.72.83.4-1.7-1.4-1.8-1.8
Delay disc. indifference point, 0s delay0.60.61.0-1.0-0.0-1.0-0.8
Delay disc. indifference point, 16s delay2.62.75.5-1.0-2.3-1.1-1.7
Delay disc. indifference point, 2s delay2.22.53.9-2.0-0.3-1.9-1.6
Delay disc. indifference point, 24s delay1.21.11.5-0.8-1.2-0.9-1.2
Delay disc. indifference point, 4s delay3.23.35.0-2.2-0.3-2.2-1.8
Delay disc. indifference point, 8s delay0.30.30.5-0.5-0.7-0.5-0.6
Delay discount exponential model param2.62.83.31.71.31.71.8
Delay discount hyperbolic model param2.62.73.31.81.11.81.8
Fecal boli incidents, locomotor time 11.01.01.51.20.41.21.1
Change in fecal boli incidents, locomotor task0.70.71.1-1.0-0.1-1.0-0.8
Time >=10cm from walls, locomotor time 10.60.61.0-0.81.0-0.7-0.3
Bouts of movement, locomotor time 11.01.11.60.81.30.91.1
Total resting periods, locomotor time 10.40.41.20.21.10.30.7
Rest time, locomotor task time 10.70.81.5-1.01.2-0.8-0.2
Distance moved, locomotor task time 10.20.20.6-0.1-0.8-0.1-0.4
Vertical activity count, locomotor time 10.00.00.1-0.1-0.4-0.0-0.2
Time >=10cm from walls, locomotor time 20.30.30.5-0.70.6-0.6-0.3
Bouts of movement, locomotor time 21.11.22.1-1.21.4-1.1-0.3
Total resting periods, locomotor time 21.21.23.4-0.91.8-0.80.0
Rest time, locomotor task time 21.92.27.5-0.02.70.21.2
Distance moved, locomotor task time 21.41.64.2-0.5-2.0-0.6-1.3
Vertical activity count, locomotor time 20.30.30.8-0.1-0.9-0.2-0.5
Weight adjusted by age2.32.64.1-2.00.4-2.0-1.5
Seeking ratio, delayed vs. immediate footshock0.30.30.5-0.7-0.1-0.6-0.6
Locomotion in novel chamber0.10.10.2-0.40.1-0.4-0.3
Locomotion in novel chamber post-restriction0.30.40.5-0.6-0.5-0.7-0.7
Progressive ratio3.33.84.8-2.2-1.1-2.1-2.2
Food seeking constrained by brief footshock0.00.00.0-0.00.10.0-0.0
Seeking ratio, punishment vs. effort2.63.24.02.01.02.02.0
Run reversals in cocaine runway, females0.20.20.60.4-0.80.3-0.1
Run reversals in cocaine runway, males1.21.23.3-0.91.8-0.80.1
Latency to leave start box in cocaine runway0.30.30.4-0.6-0.4-0.6-0.6
Latency to leave start box in cocaine runway, F0.30.40.40.50.70.60.7
Latency to leave start box in cocaine runway, M3.73.54.3-1.8-1.9-1.8-2.1
Cd content in liver1.51.64.2-0.7-2.0-0.8-1.0
Co content in liver1.41.62.5-1.0-1.6-1.0-1.4
Cu content in liver1.72.03.21.8-1.01.70.9
Fe content in liver0.70.81.9-0.6-0.8-0.6-1.4
K content in liver0.60.61.10.80.20.81.0
Mg content in liver2.82.94.81.31.71.42.2
Mn content in liver3.23.79.50.83.11.01.9
Na content in liver0.10.20.50.2-0.70.1-0.3
Rb content in liver0.50.60.90.9-0.00.90.9
Se content in liver1.11.44.30.12.10.31.1
Sr content in liver0.60.50.7-0.80.6-0.8-0.6
Zn content in liver0.80.81.70.80.40.91.3