ENSRNOG00000022601

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000022601 0.28 0.12 0.0e+00 0.21 0.21 0.22 0.22 1.2e-22 3.8e-23 1.8e-23 1.5e-23
2 Brain gene expression ENSRNOG00000022601 0.07 0.05 1.4e-05 0.04 0.06 0.05 0.05 1.1e-04 7.3e-06 1.6e-05 4.3e-05
3 NAcc gene expression ENSRNOG00000022601 0.07 0.06 2.0e-03 0.01 0.03 0.03 0.03 5.3e-02 1.4e-03 1.3e-03 1.8e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.72.13.0-1.7-1.5-1.0
BMI without tail4.39.010.1-3.2-3.2-2.6
Body weight2.39.811.5-3.4-3.2-2.8
Epididymis fat weight0.81.92.1-1.4-1.3-1.4
Glucose1.01.51.7-1.3-1.3-1.1
Heart weight1.01.41.5-1.2-1.2-1.1
Left kidney weight1.02.73.0-1.6-1.7-1.6
Right kidney weight0.20.60.7-0.6-0.8-0.8
Tail length2.67.88.7-2.9-3.0-2.6
Length with tail1.45.05.3-2.2-2.3-2.3
Length without tail0.10.20.30.60.50.2
Liver weight, left0.50.80.9-1.0-0.8-0.8
Liver weight, right0.00.00.0-0.1-0.1-0.1
Parametrial fat weight0.40.70.9-0.8-0.9-0.8
Retroperitoneal fat weight0.10.50.50.70.70.6
Intraocular pressure2.63.74.1-2.0-2.0-1.7
Extensor digitorum longus weight3.614.517.8-4.2-3.7-3.4
Soleus weight1.02.83.8-1.2-1.8-2.0
Tibialis anterior weight7.024.128.3-5.3-4.9-4.5
Tibia length0.61.82.3-1.1-1.3-1.5
Number of licking bursts3.03.55.3-2.3-1.7-1.6
Food consumed during 24 hour testing period1.51.81.9-1.4-1.3-1.4
Times rat made contact with spout0.00.10.2-0.4-0.1-0.0
Mean time between licks in bursts0.20.30.40.60.60.4
Mean num. licks in bursts2.22.73.51.91.51.5
Std. dev. time between licks in bursts0.40.50.60.80.70.7
Water consumed over 24 hours0.70.81.2-1.1-0.7-0.8
Indifference point 0 sec3.04.86.6-1.7-2.2-2.6
Indifference point AUC5.96.97.7-2.8-2.7-2.4
Indifference point function ln k1.52.22.61.61.51.2
Indifference point function log k1.52.22.61.61.51.2
Delay discounting total patch changes 0 sec3.45.57.1-2.0-2.3-2.7
Delay discounting total patch changes 12 sec1.52.02.2-1.5-1.5-1.4
Delay discounting total patch changes 18 sec1.31.72.0-1.2-1.3-1.4
Delay discounting total patch changes 24 sec3.24.04.1-1.9-2.0-2.0
Delay discounting total patch changes 6 sec4.97.58.2-2.6-2.8-2.9
Delay discounting time to switch 0 sec3.25.05.52.12.42.2
Delay discounting water rate 0 sec2.94.65.2-2.0-2.2-2.3
Delay discounting water rate 12 sec0.20.20.3-0.4-0.5-0.6
Delay discounting water rate 18 sec0.00.00.1-0.2-0.00.3
Delay discounting water rate 24 sec0.60.91.10.80.91.1
Delay discounting water rate 6 sec0.71.01.5-1.2-0.9-0.8
Locomotor activity0.00.00.0-0.1-0.1-0.0
Locomotor testing distance0.30.40.5-0.5-0.7-0.7
Locomotor testing rearing1.42.22.6-1.6-1.4-1.4
Light reinforcement 15.09.110.2-2.8-3.0-3.2
Light reinforcement 24.76.27.4-2.1-2.6-2.7
Reaction time number correct0.40.50.6-0.6-0.7-0.8
Reaction time mean minus median1.31.62.90.81.21.7
Reaction time mean minus median AUC0.30.41.10.20.41.0
Reaction time num false alarms0.30.40.80.50.50.9
Reaction time num false alarms AUC0.00.00.1-0.2-0.30.1
Reaction time trials correct on left0.40.50.6-0.6-0.7-0.8
Reaction time trials on left0.30.40.5-0.5-0.6-0.7
Reaction time mean3.65.05.72.12.32.4
Reaction time mean AUC4.45.96.72.22.42.6
Median of all reaction times3.85.15.52.22.32.2
Reaction time omissions1.52.12.61.61.41.3
Reaction time false alarm rate0.40.60.90.70.71.0
Reaction time premature initiation rate3.44.55.12.22.12.0
Reaction time premature initiations1.72.43.01.71.51.4
Std. dev. reaction times2.53.44.81.51.82.2
Reaction time trials completed0.30.40.5-0.5-0.6-0.7
Reaction time trials AUC0.20.30.4-0.4-0.6-0.7
Social response proportion2.12.32.81.61.71.3
Social responses0.40.50.6-0.8-0.7-0.6
Social time0.10.10.2-0.1-0.1-0.5
Conditioned locomotion0.40.50.7-0.5-0.7-0.8
Cocaine response after cond. corrected0.10.20.30.3-0.2-0.6
Cocaine response after cond. not corrected0.30.30.80.0-0.5-0.9
Cocaine response before conditioning0.40.50.7-0.8-0.7-0.5
Saline control response2.43.23.5-1.7-1.8-1.9
Condit. Reinf. active minus inactive responses0.30.40.5-0.7-0.6-0.5
Condit. Reinf. active-inactive response ratio0.00.00.0-0.00.00.0
Condit. Reinf. active responses1.42.02.5-1.6-1.4-1.2
Condit. Reinf. inactive responses1.01.32.2-1.5-1.1-0.7
Condit. Reinf. lever presses0.20.30.7-0.8-0.5-0.1
Condit. Reinf. lever reinforcers received1.62.32.9-1.7-1.5-1.3
Pavlov. Cond. lever latency0.30.40.80.90.50.1
Pavlov. Cond. magazine entry latency0.50.60.70.70.80.8
Pavlov. Cond. change in total contacts0.30.51.00.30.61.0
Pavlov. Cond. index score0.30.40.70.40.60.9
Pavlov. Cond. latency score0.30.40.80.30.60.9
Pavlov. Cond. lever contacts0.10.20.3-0.6-0.4-0.0
Pavlov. Cond. magazine entry number0.70.91.3-0.6-1.0-1.2
Pavlov. Cond. intertrial magazine entries0.60.80.8-0.9-0.8-0.8
Pavlov. Cond. lever-magazine prob. diff.0.40.50.90.40.60.9
Pavlov. Cond. response bias0.10.10.2-0.10.10.4
Conditioned reinforcement - actives0.30.30.7-0.8-0.1-0.4
Conditioned reinforcement - inactives0.20.20.4-0.7-0.1-0.4
Conditioned locomotion0.50.60.8-0.9-0.6-0.8
Intermittent access intake day 1-15 change0.00.00.1-0.10.20.3
Intermittent access intake escalation0.10.10.2-0.4-0.2-0.3
Intermittent access intake escalation 20.00.00.1-0.20.20.1
Intermitt. access day 1 inactive lever presses0.70.80.9-0.9-0.8-0.9
Intermitt. access day 15 inactive lever presses0.40.50.6-0.6-0.6-0.8
Intermitt. access escalation Index1.71.52.1-1.2-1.4-1.1
Intermittent access day 1 total infusions0.00.00.1-0.0-0.2-0.2
Intermittent access day 15 total infusions0.30.40.5-0.7-0.5-0.6
Intermittent access terminal intake (last 3 days)0.91.01.5-1.2-0.8-1.0
Intermittent access total infusions1.01.11.4-1.2-0.9-1.1
Intermittent access day 1 locomotion0.20.20.40.60.20.3
Intermittent access day 15 total locomotion0.30.30.50.70.50.4
Intermittent access total locomotion0.60.70.70.80.80.9
Intermittent access standard deviation0.20.20.3-0.6-0.2-0.5
Cocaine induced anxiety0.30.40.60.60.80.3
Post-drug Anxiety0.60.60.8-0.9-0.7-0.8
Baseline Anxiety0.20.20.3-0.5-0.5-0.1
Lifetime Intake2.42.73.1-1.7-1.5-1.7
Incentive Sensitization - Responses0.70.71.1-1.1-0.5-0.8
Incentive Sensitization - Breakpoint0.50.50.7-0.9-0.4-0.7
Progressive ratio test 1 active lever presses1.11.11.5-1.2-1.0-1.0
Progressive ratio test 1 breakpoint1.51.52.0-1.4-1.1-1.1
Progressive ratio test 1 inactive lever presses3.23.43.7-1.9-1.8-1.8
Progressive ratio test 2 active lever presses1.21.21.5-1.2-0.9-1.2
Progressive ratio test 2 breakpoint0.60.70.9-0.9-0.7-0.9
Progressive ratio test 2 inactive lever presses0.91.01.3-1.1-0.7-1.1
Total sessions with >9 infusions1.71.92.2-1.4-1.2-1.5
Short access day 1 total inactive lever presses4.34.85.7-2.4-1.9-2.2
Short access day 10 total inactive lever presses0.30.30.5-0.5-0.4-0.7
Short access day 1 total infusions5.55.86.7-2.6-2.2-2.5
Short access day 10 total infusions2.52.83.1-1.6-1.6-1.8
Short access total infusions2.93.23.6-1.9-1.6-1.9
Short access day 1 locomotion0.10.20.2-0.2-0.4-0.5
Short access day 10 total locomotion1.31.41.51.21.21.2
Short access total locomotion0.40.40.5-0.5-0.7-0.5
Compulsive drug intake0.30.30.4-0.6-0.5-0.5
One hour access (0.3 mA shock)1.11.21.3-1.1-1.1-1.2
One hour access (shock baseline)1.21.31.8-1.0-1.1-1.3
Number of responses in last shaping day3.83.84.8-1.8-1.9-2.2
Context. condit. distance diff. score0.20.30.30.50.50.5
Locomotion velocity, session 15.86.27.9-2.0-2.6-2.8
Locomotion distance, session 11.92.53.0-1.3-1.6-1.7
Locomotion velocity, session 20.70.81.3-1.1-0.8-0.6
Locomotion distance, session 23.44.84.9-2.2-2.2-2.2
Locomotion velocity, session 31.01.21.4-0.9-1.1-1.2
Locomotion distance, session 33.03.33.7-1.8-1.9-1.7
Stereotopy head waving bouts, day 30.40.50.6-0.5-0.7-0.8
Stereotopy head waving duration, day 30.00.00.00.1-0.1-0.1
Locomotion velocity, session 70.00.10.10.30.20.2
Locomotion distance, session 70.40.50.6-0.7-0.7-0.8
Stereotopy head waving bouts, day 72.02.22.8-1.7-1.5-1.2
Stereotopy head waving duration, day 70.70.91.1-1.0-1.0-0.7
Locomotion velocity, session 80.81.01.3-0.8-0.9-1.1
Locomotion distance, session 80.81.31.5-1.0-1.1-1.2
Degree of sensitization distance1.01.01.21.11.10.9
Degree of sensitization stereotypy0.80.91.3-1.1-1.0-0.7
Condit. Reinf. active minus inactive responses0.20.20.3-0.5-0.4-0.4
Condit. Reinf. active-inactive response ratio0.70.80.91.00.90.8
Condit. Reinf. active responses1.21.52.0-1.4-1.1-1.1
Condit. Reinf. inactive responses1.11.31.9-1.4-1.1-0.9
Incentive salience index mean3.44.14.7-2.2-1.9-1.9
Condit. Reinf. lever presses10.514.115.4-3.9-3.7-3.6
Time in familiar zone, hab. session 14.13.94.91.62.02.2
Time in novel zone, hab. session 10.50.51.0-0.1-0.6-1.0
Total zone transitions, hab. session 10.00.00.00.0-0.00.0
Total locomotion distance, hab. session 10.20.20.50.10.40.7
Locomotion velocity, hab. session 10.20.20.5-0.7-0.4-0.0
Time in familiar zone, hab. session 22.52.63.01.51.71.7
Time in novel zone, hab. session 20.10.10.30.1-0.3-0.6
Total zone transitions, hab. session 21.41.82.2-1.2-1.4-1.5
Total locomotion distance, hab. session 20.50.70.8-0.9-0.8-0.8
Locomotion velocity, hab. session 20.60.81.0-1.0-0.9-0.9
Novel to familiar place preference ratio0.40.40.91.00.50.2
Novelty place preference0.91.01.81.30.90.5
Time in novel zone, NPP test1.21.22.21.51.00.6
Total zone transitions, NPP test1.82.52.7-1.5-1.6-1.7
Total locomotion distance, NPP test2.73.74.0-1.9-2.0-1.9
Locomotion velocity, NPP test2.73.84.1-2.0-2.0-1.8
Pavlov. Cond. lever latency6.78.59.73.12.92.7
Pavlov. Cond. magazine entry latency0.20.30.3-0.5-0.5-0.5
Pavlov. Cond. change in total contacts2.82.93.1-1.8-1.7-1.7
Pavlov. Cond. index score2.12.73.3-1.8-1.6-1.5
Pavlov. Cond. latency score2.12.73.2-1.8-1.6-1.5
Pavlov. Cond. lever contacts4.35.15.8-2.4-2.2-2.1
Pavlov. Cond. magazine entry number0.40.50.60.80.70.7
Pavlov. Cond. intertrial magazine entries0.10.10.1-0.3-0.2-0.1
Pavlov. Cond. lever-magazine prob. diff.1.51.82.3-1.5-1.3-1.2
Pavlov. Cond. response bias2.32.93.3-1.8-1.7-1.6
Bone: apparent density0.30.50.7-0.9-0.8-0.5
Bone surface0.71.31.4-1.1-1.2-1.1
Bone volume0.40.70.8-0.9-0.9-0.7
Bone: connectivity density0.00.10.1-0.3-0.3-0.0
Bone: cortical apparent density1.11.41.80.91.31.3
Bone: cortical area0.71.01.7-1.3-0.9-0.7
Bone: cortical porosity0.40.50.50.70.70.6
Bone: cortical porosity0.00.00.00.10.10.1
Bone: cortical thickness0.00.10.1-0.20.10.3
Bone: cortical thickness0.50.60.90.80.70.9
Bone: cortical tissue density1.11.41.70.91.31.3
Bone: elastic displacement6.06.77.82.82.62.4
Bone: elastic work5.87.58.02.62.82.8
Bone: endosteal estimation1.73.73.9-2.0-1.9-1.8
Bone: endosteal perimeter2.24.54.6-2.1-2.2-2.1
Bone: final force0.81.31.7-1.3-1.2-1.0
Bone: final moment0.40.70.9-1.0-0.8-0.6
Bone: marrow area1.53.33.7-1.9-1.8-1.7
Bone: maximum diameter1.52.73.8-1.9-1.6-1.4
Bone: maximum force1.62.83.8-2.0-1.7-1.4
Bone: maximum moment0.91.62.4-1.5-1.2-1.0
Bone: minimum diameter0.10.20.20.40.40.5
Bone: periosteal estimation1.42.83.5-1.9-1.7-1.5
Bone: periosteal perimeter1.21.92.0-1.4-1.4-1.4
Bone: post-yield work2.33.23.5-1.9-1.8-1.7
Bone: stiffness2.33.64.8-2.2-1.9-1.5
Bone: tissue strength0.00.00.1-0.3-0.2-0.2
Bone: trabecular number0.20.30.5-0.7-0.5-0.2
Bone: trabecular spacing0.20.20.30.30.50.5
Bone: trabecular thickness0.20.30.30.50.50.5
Bone: trabecular tissue density1.92.73.6-1.9-1.6-1.3
Breakpoint value in progressive ratio session0.40.40.6-0.2-0.8-0.8
Distance traveled before self-admin7.27.78.8-3.0-2.6-2.7
Distance traveled after self-admin0.50.51.1-1.1-0.4-0.5
Delta time in closed arm before/after self-admin0.20.20.3-0.5-0.4-0.2
Delta time in open arm before/after self-admin0.00.00.0-0.0-0.0-0.1
Diff in mean of infusions in LGA sessions0.20.20.20.50.30.4
Extinction: sum of active levers before priming1.11.11.31.11.01.0
Active lever presses in extinction session 60.30.30.60.80.30.5
Delta distance traveled before/after self-admin0.50.60.90.60.90.8
Delta ambulatory time before/after self-admin1.41.52.11.11.41.1
Time in closed arm before self-admin2.02.32.51.61.51.5
Time in closed arm after self-admin0.50.50.50.70.70.7
Time in open arm before self-admin4.14.44.9-2.0-2.1-2.2
Time in open arm after self-admin2.42.62.7-1.6-1.6-1.6
Sum of active levers in priming session hrs 5-60.90.91.61.30.80.6
Time to tail flick, vehicle, before self-admin1.92.02.81.71.21.3
Time to tail flick, vehicle, after self-admin0.00.00.0-0.2-0.2-0.2
Time to tail flick, test, before self-admin0.10.10.1-0.4-0.1-0.0
Time to tail flick, test, after self-admin0.00.10.10.00.10.4
Delta time to tail flick, vehicle, before/after SA0.60.60.8-0.9-0.6-0.8
Delta time to tail flick, test, before/after SA0.20.20.30.50.30.4
Ambulatory time before self-admin6.66.97.3-2.7-2.5-2.7
Ambulatory time after self-admin0.60.60.9-0.9-0.6-0.9
Total heroin consumption0.00.10.1-0.1-0.4-0.2
Area under the delay curve0.00.00.10.30.0-0.2
Delay disc. indifference point, 0s delay0.20.20.40.70.40.3
Delay disc. indifference point, 16s delay0.10.10.30.0-0.3-0.5
Delay disc. indifference point, 2s delay0.10.10.10.10.40.3
Delay disc. indifference point, 24s delay0.10.10.20.40.20.1
Delay disc. indifference point, 4s delay0.10.10.10.30.20.2
Delay disc. indifference point, 8s delay0.00.00.0-0.0-0.2-0.2
Delay discount exponential model param0.00.00.1-0.20.00.2
Delay discount hyperbolic model param0.00.00.0-0.20.10.2
Fecal boli incidents, locomotor time 11.11.21.71.31.10.9
Change in fecal boli incidents, locomotor task2.42.32.5-1.6-1.5-1.4
Time >=10cm from walls, locomotor time 10.40.40.6-0.7-0.8-0.4
Bouts of movement, locomotor time 11.71.92.11.41.41.3
Total resting periods, locomotor time 13.13.43.61.91.91.8
Rest time, locomotor task time 15.56.06.52.32.52.5
Distance moved, locomotor task time 14.95.45.7-2.3-2.4-2.3
Vertical activity count, locomotor time 14.24.45.1-2.1-2.3-2.0
Time >=10cm from walls, locomotor time 20.20.20.2-0.4-0.5-0.5
Bouts of movement, locomotor time 20.30.30.5-0.7-0.5-0.3
Total resting periods, locomotor time 20.00.00.1-0.3-0.2-0.0
Rest time, locomotor task time 21.41.61.81.31.21.2
Distance moved, locomotor task time 20.10.10.1-0.4-0.2-0.2
Vertical activity count, locomotor time 20.70.80.9-0.9-0.9-0.8
Weight adjusted by age1.01.11.7-0.7-1.0-1.3
Seeking ratio, delayed vs. immediate footshock1.72.02.7-1.7-1.3-1.2
Locomotion in novel chamber0.30.40.50.70.70.5
Locomotion in novel chamber post-restriction0.00.10.1-0.40.10.2
Progressive ratio0.00.00.00.1-0.1-0.2
Food seeking constrained by brief footshock10.613.015.1-3.9-3.5-3.4
Seeking ratio, punishment vs. effort2.32.94.0-2.0-1.6-1.5
Run reversals in cocaine runway, females0.30.30.40.50.50.7
Run reversals in cocaine runway, males0.10.10.20.20.30.4
Latency to leave start box in cocaine runway0.30.30.5-0.7-0.5-0.6
Latency to leave start box in cocaine runway, F0.10.10.2-0.0-0.1-0.4
Latency to leave start box in cocaine runway, M1.91.92.3-1.5-1.3-1.2
Cd content in liver0.10.10.3-0.5-0.20.0
Co content in liver0.20.20.40.70.40.1
Cu content in liver1.51.81.91.31.41.3
Fe content in liver2.02.43.1-1.3-1.5-1.7
K content in liver0.10.10.10.1-0.2-0.3
Mg content in liver0.30.30.70.80.40.4
Mn content in liver0.10.10.20.30.30.5
Na content in liver0.80.81.01.00.90.8
Rb content in liver1.92.43.51.91.51.2
Se content in liver0.40.50.9-1.0-0.6-0.3
Sr content in liver0.10.10.2-0.4-0.4-0.1
Zn content in liver0.20.30.40.40.50.6