tGap1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 OFC isoform ratio ENSRNOT00000033404 0.44 0.17 2.5e-04 -0.01 0.09 0.05 0.06 7.2e-01 4.7e-03 2.6e-02 1.3e-02
2 OFC isoform ratio ENSRNOT00000082912 0.48 0.17 7.1e-05 0.03 0.11 0.06 0.08 7.0e-02 1.5e-03 1.4e-02 5.4e-03
3 PL isoform ratio ENSRNOT00000082912 0.06 0.04 5.6e-03 0.02 0.01 0.01 0.01 2.1e-02 2.6e-02 3.4e-02 5.0e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.92.93.31.8-1.8-1.5
BMI without tail1.63.44.31.7-1.7-2.1
Body weight0.41.92.21.5-1.5-1.1
Epididymis fat weight0.30.81.3-1.11.0-0.2
Glucose0.71.11.21.1-1.1-1.0
Heart weight0.81.21.4-1.21.20.9
Left kidney weight1.33.74.4-2.12.11.5
Right kidney weight1.64.55.3-2.32.31.7
Tail length0.10.20.50.2-0.2-0.7
Length with tail0.00.00.00.2-0.2-0.1
Length without tail0.10.20.60.2-0.10.7
Liver weight, left2.54.14.81.9-2.0-2.2
Liver weight, right0.00.00.1-0.20.2-0.2
Parametrial fat weight0.20.41.1-0.10.0-1.1
Retroperitoneal fat weight0.10.20.3-0.60.50.2
Intraocular pressure2.73.84.52.1-2.1-1.5
Extensor digitorum longus weight8.935.647.25.4-5.6-6.9
Soleus weight1.13.14.31.5-1.6-2.1
Tibialis anterior weight7.224.726.94.8-4.9-5.2
Tibia length1.74.74.8-2.12.22.2
Number of licking bursts0.60.71.7-0.40.51.3
Food consumed during 24 hour testing period2.12.52.71.6-1.7-1.5
Times rat made contact with spout0.00.00.1-0.20.20.2
Mean time between licks in bursts1.72.43.01.7-1.7-1.0
Mean num. licks in bursts0.30.30.90.2-0.3-1.0
Std. dev. time between licks in bursts0.10.10.20.4-0.30.4
Water consumed over 24 hours0.20.20.30.5-0.5-0.3
Indifference point 0 sec1.72.83.0-1.71.71.6
Indifference point AUC0.10.10.1-0.40.40.1
Indifference point function ln k0.20.20.60.2-0.2-0.8
Indifference point function log k0.20.20.60.2-0.2-0.8
Delay discounting total patch changes 0 sec1.52.42.8-1.71.71.3
Delay discounting total patch changes 12 sec2.43.23.3-1.81.81.8
Delay discounting total patch changes 18 sec0.10.10.1-0.40.3-0.1
Delay discounting total patch changes 24 sec1.11.41.7-1.31.30.9
Delay discounting total patch changes 6 sec0.40.70.9-0.90.90.5
Delay discounting time to switch 0 sec3.85.86.72.6-2.6-2.0
Delay discounting water rate 0 sec1.01.61.8-1.41.41.0
Delay discounting water rate 12 sec1.21.92.0-1.31.41.4
Delay discounting water rate 18 sec0.50.61.2-0.50.61.1
Delay discounting water rate 24 sec0.91.21.8-1.31.30.4
Delay discounting water rate 6 sec1.42.02.8-1.21.31.7
Locomotor activity0.10.10.20.2-0.2-0.4
Locomotor testing distance0.20.30.30.6-0.6-0.6
Locomotor testing rearing0.30.50.6-0.70.70.7
Light reinforcement 10.20.41.00.1-0.2-1.0
Light reinforcement 21.62.13.91.0-1.1-2.0
Reaction time number correct0.10.20.20.5-0.40.4
Reaction time mean minus median3.14.07.91.4-1.5-2.8
Reaction time mean minus median AUC3.95.08.81.7-1.8-3.0
Reaction time num false alarms0.40.61.70.1-0.01.3
Reaction time num false alarms AUC0.40.51.60.00.11.3
Reaction time trials correct on left0.10.20.20.5-0.40.4
Reaction time trials on left0.20.20.30.6-0.50.3
Reaction time mean3.85.26.12.1-2.2-2.5
Reaction time mean AUC4.25.76.62.2-2.3-2.6
Median of all reaction times3.64.95.32.3-2.3-2.1
Reaction time omissions2.43.25.21.4-1.5-2.3
Reaction time false alarm rate0.20.20.4-0.40.40.6
Reaction time premature initiation rate2.02.72.8-1.61.61.7
Reaction time premature initiations1.31.82.5-1.21.21.6
Std. dev. reaction times2.02.75.21.1-1.2-2.3
Reaction time trials completed0.20.20.30.6-0.50.3
Reaction time trials AUC0.20.30.40.7-0.60.2
Social response proportion0.20.20.6-0.10.0-0.8
Social responses0.40.51.60.0-0.1-1.3
Social time0.10.10.20.4-0.4-0.4
Conditioned locomotion0.20.20.30.4-0.4-0.5
Cocaine response after cond. corrected1.31.41.9-1.11.11.4
Cocaine response after cond. not corrected2.32.53.5-1.41.51.9
Cocaine response before conditioning0.10.10.3-0.10.10.6
Saline control response0.50.60.80.9-0.80.7
Condit. Reinf. active minus inactive responses0.91.22.90.6-0.41.7
Condit. Reinf. active-inactive response ratio0.70.71.50.6-0.51.2
Condit. Reinf. active responses1.01.43.90.4-0.32.0
Condit. Reinf. inactive responses0.00.00.10.3-0.20.1
Condit. Reinf. lever presses0.40.51.20.5-0.41.1
Condit. Reinf. lever reinforcers received1.11.64.60.3-0.12.1
Pavlov. Cond. lever latency0.91.22.20.8-0.9-1.5
Pavlov. Cond. magazine entry latency0.00.00.00.1-0.1-0.0
Pavlov. Cond. change in total contacts0.60.91.41.2-1.10.3
Pavlov. Cond. index score0.20.30.30.5-0.50.5
Pavlov. Cond. latency score0.10.20.50.2-0.10.7
Pavlov. Cond. lever contacts0.40.51.2-0.40.41.1
Pavlov. Cond. magazine entry number0.30.30.5-0.70.70.2
Pavlov. Cond. intertrial magazine entries0.40.60.70.8-0.8-0.6
Pavlov. Cond. lever-magazine prob. diff.0.20.20.30.4-0.40.6
Pavlov. Cond. response bias0.20.30.70.3-0.20.8
Conditioned reinforcement - actives1.21.22.3-0.70.81.5
Conditioned reinforcement - inactives0.20.20.20.4-0.4-0.5
Conditioned locomotion0.60.71.7-0.40.51.3
Intermittent access intake day 1-15 change6.16.16.2-2.52.52.4
Intermittent access intake escalation4.64.64.7-2.12.12.2
Intermittent access intake escalation 25.35.27.3-2.02.12.7
Intermitt. access day 1 inactive lever presses0.80.82.2-0.40.3-1.5
Intermitt. access day 15 inactive lever presses1.01.11.5-1.21.1-0.7
Intermitt. access escalation Index0.00.00.10.1-0.1-0.3
Intermittent access day 1 total infusions0.40.51.2-0.40.41.1
Intermittent access day 15 total infusions3.94.46.2-1.81.92.5
Intermittent access terminal intake (last 3 days)5.56.08.4-2.22.32.9
Intermittent access total infusions2.62.94.2-1.51.52.0
Intermittent access day 1 locomotion0.20.20.3-0.30.30.5
Intermittent access day 15 total locomotion0.80.91.9-0.60.61.4
Intermittent access total locomotion1.01.11.4-1.01.01.2
Intermittent access standard deviation5.66.07.0-2.62.62.0
Cocaine induced anxiety0.20.20.5-0.20.1-0.7
Post-drug Anxiety1.51.63.70.7-0.8-1.9
Baseline Anxiety0.10.10.20.5-0.5-0.1
Lifetime Intake3.13.54.4-1.71.82.1
Incentive Sensitization - Responses0.40.40.80.5-0.40.9
Incentive Sensitization - Breakpoint0.40.40.90.4-0.30.9
Progressive ratio test 1 active lever presses3.63.84.8-2.22.21.4
Progressive ratio test 1 breakpoint3.63.84.6-2.12.11.5
Progressive ratio test 1 inactive lever presses0.50.50.8-0.90.8-0.3
Progressive ratio test 2 active lever presses1.81.92.7-1.21.21.6
Progressive ratio test 2 breakpoint1.31.52.6-0.91.01.6
Progressive ratio test 2 inactive lever presses0.70.90.9-0.90.90.9
Total sessions with >9 infusions2.22.42.9-1.71.71.2
Short access day 1 total inactive lever presses0.50.50.8-0.90.90.3
Short access day 10 total inactive lever presses0.40.40.5-0.60.5-0.7
Short access day 1 total infusions3.13.33.4-1.81.81.9
Short access day 10 total infusions2.42.72.9-1.71.71.5
Short access total infusions3.33.63.7-1.91.91.9
Short access day 1 locomotion0.91.01.3-1.21.10.6
Short access day 10 total locomotion0.20.30.80.0-0.1-0.9
Short access total locomotion0.60.60.8-0.90.90.4
Compulsive drug intake2.22.23.11.3-1.3-1.8
One hour access (0.3 mA shock)2.12.44.6-1.11.22.1
One hour access (shock baseline)5.15.98.5-2.12.22.9
Number of responses in last shaping day0.40.50.7-0.80.80.3
Context. condit. distance diff. score0.10.20.2-0.50.4-0.2
Locomotion velocity, session 11.71.82.91.1-1.1-1.7
Locomotion distance, session 12.33.03.31.8-1.8-1.5
Locomotion velocity, session 21.41.72.31.1-1.2-1.5
Locomotion distance, session 22.13.03.51.9-1.9-1.4
Locomotion velocity, session 30.10.10.30.1-0.2-0.5
Locomotion distance, session 30.40.40.60.8-0.7-0.2
Stereotopy head waving bouts, day 30.40.40.60.8-0.7-0.4
Stereotopy head waving duration, day 30.60.71.20.7-0.7-1.1
Locomotion velocity, session 70.90.92.80.2-0.11.7
Locomotion distance, session 71.51.94.1-0.91.02.0
Stereotopy head waving bouts, day 70.91.01.11.0-1.0-1.0
Stereotopy head waving duration, day 70.60.81.50.6-0.6-1.2
Locomotion velocity, session 81.92.34.31.1-1.1-2.1
Locomotion distance, session 81.11.72.61.1-1.1-1.6
Degree of sensitization distance1.11.11.7-0.80.91.3
Degree of sensitization stereotypy1.01.11.80.8-0.9-1.3
Condit. Reinf. active minus inactive responses6.57.28.62.9-2.9-2.1
Condit. Reinf. active-inactive response ratio8.28.910.53.2-3.2-2.4
Condit. Reinf. active responses5.97.28.72.9-2.9-2.1
Condit. Reinf. inactive responses0.30.30.40.5-0.5-0.6
Incentive salience index mean7.59.010.53.2-3.2-2.4
Condit. Reinf. lever presses3.24.34.82.2-2.2-1.8
Time in familiar zone, hab. session 10.40.40.6-0.80.7-0.2
Time in novel zone, hab. session 10.20.10.3-0.20.20.6
Total zone transitions, hab. session 12.23.13.61.9-1.9-1.4
Total locomotion distance, hab. session 11.62.23.01.7-1.7-0.9
Locomotion velocity, hab. session 12.02.93.71.9-1.9-1.2
Time in familiar zone, hab. session 22.12.23.1-1.81.70.7
Time in novel zone, hab. session 20.90.91.51.2-1.2-0.1
Total zone transitions, hab. session 20.60.81.70.6-0.7-1.3
Total locomotion distance, hab. session 20.50.70.80.8-0.8-0.9
Locomotion velocity, hab. session 20.30.40.60.6-0.6-0.8
Novel to familiar place preference ratio0.00.00.10.0-0.00.3
Novelty place preference0.10.10.2-0.20.20.4
Time in novel zone, NPP test0.10.10.2-0.40.40.4
Total zone transitions, NPP test1.52.23.31.2-1.3-1.8
Total locomotion distance, NPP test1.42.02.31.5-1.5-1.1
Locomotion velocity, NPP test1.01.41.81.3-1.3-0.8
Pavlov. Cond. lever latency1.11.51.7-1.31.31.0
Pavlov. Cond. magazine entry latency0.70.91.21.1-1.1-0.5
Pavlov. Cond. change in total contacts2.42.63.11.8-1.8-1.2
Pavlov. Cond. index score1.11.41.51.2-1.2-1.1
Pavlov. Cond. latency score1.01.31.41.2-1.2-1.1
Pavlov. Cond. lever contacts1.72.02.61.6-1.6-0.9
Pavlov. Cond. magazine entry number0.70.80.9-1.01.00.8
Pavlov. Cond. intertrial magazine entries0.10.10.20.1-0.00.4
Pavlov. Cond. lever-magazine prob. diff.1.11.31.51.2-1.2-1.0
Pavlov. Cond. response bias1.21.41.91.4-1.4-0.7
Bone: apparent density0.71.13.2-0.20.31.8
Bone surface1.22.26.50.00.22.5
Bone volume1.11.95.50.2-0.02.4
Bone: connectivity density0.81.23.1-0.50.61.8
Bone: cortical apparent density0.81.12.20.7-0.8-1.5
Bone: cortical area0.20.30.40.6-0.50.6
Bone: cortical porosity0.10.10.10.4-0.30.3
Bone: cortical porosity0.20.20.30.5-0.50.0
Bone: cortical thickness0.60.91.41.2-1.1-0.2
Bone: cortical thickness1.01.21.31.1-1.2-1.0
Bone: cortical tissue density0.81.12.30.7-0.7-1.5
Bone: elastic displacement0.91.11.51.2-1.2-0.5
Bone: elastic work0.40.50.70.9-0.80.1
Bone: endosteal estimation0.30.71.80.5-0.41.4
Bone: endosteal perimeter0.40.71.8-0.40.51.3
Bone: final force0.10.20.40.4-0.30.6
Bone: final moment0.20.31.00.1-0.01.0
Bone: marrow area0.30.71.50.6-0.51.2
Bone: maximum diameter0.30.50.9-0.50.50.9
Bone: maximum force0.20.30.50.4-0.30.7
Bone: maximum moment0.20.41.20.1-0.01.1
Bone: minimum diameter1.73.15.02.2-2.1-0.0
Bone: periosteal estimation0.51.11.21.1-0.91.1
Bone: periosteal perimeter0.30.51.4-0.20.31.2
Bone: post-yield work3.14.26.3-1.71.82.5
Bone: stiffness0.10.20.5-0.00.10.7
Bone: tissue strength2.82.72.9-1.71.71.6
Bone: trabecular number0.40.61.5-0.30.31.2
Bone: trabecular spacing0.60.72.00.3-0.4-1.4
Bone: trabecular thickness1.01.23.50.10.11.9
Bone: trabecular tissue density0.81.12.50.6-0.7-1.6
Breakpoint value in progressive ratio session2.32.53.51.4-1.5-1.9
Distance traveled before self-admin0.00.00.1-0.10.1-0.3
Distance traveled after self-admin0.50.60.9-1.00.90.1
Delta time in closed arm before/after self-admin0.20.20.2-0.50.40.4
Delta time in open arm before/after self-admin0.40.40.5-0.70.70.3
Diff in mean of infusions in LGA sessions1.82.02.01.4-1.4-1.4
Extinction: sum of active levers before priming0.40.40.40.6-0.6-0.5
Active lever presses in extinction session 60.10.10.2-0.40.40.3
Delta distance traveled before/after self-admin1.41.41.7-1.11.21.3
Delta ambulatory time before/after self-admin2.62.83.5-1.61.61.9
Time in closed arm before self-admin0.30.40.4-0.70.70.6
Time in closed arm after self-admin0.60.70.8-0.90.90.7
Time in open arm before self-admin0.91.01.51.2-1.2-0.3
Time in open arm after self-admin0.40.40.60.5-0.5-0.8
Sum of active levers in priming session hrs 5-60.50.50.80.9-0.8-0.1
Time to tail flick, vehicle, before self-admin0.80.81.6-0.60.71.2
Time to tail flick, vehicle, after self-admin1.92.03.9-1.01.12.0
Time to tail flick, test, before self-admin0.60.60.9-1.00.9-0.1
Time to tail flick, test, after self-admin2.02.02.2-1.51.51.3
Delta time to tail flick, vehicle, before/after SA0.40.40.8-0.40.50.9
Delta time to tail flick, test, before/after SA0.90.80.9-0.90.90.9
Ambulatory time before self-admin0.20.20.40.2-0.3-0.7
Ambulatory time after self-admin0.40.50.6-0.80.80.6
Total heroin consumption0.60.70.70.9-0.9-0.8
Area under the delay curve0.90.92.20.5-0.6-1.5
Delay disc. indifference point, 0s delay0.30.30.4-0.60.60.5
Delay disc. indifference point, 16s delay1.31.33.10.6-0.7-1.8
Delay disc. indifference point, 2s delay1.61.72.21.5-1.5-0.9
Delay disc. indifference point, 24s delay0.10.10.1-0.20.1-0.4
Delay disc. indifference point, 4s delay1.01.12.60.6-0.6-1.6
Delay disc. indifference point, 8s delay0.20.20.3-0.40.4-0.5
Delay discount exponential model param0.80.81.8-0.50.61.3
Delay discount hyperbolic model param1.01.02.1-0.60.71.5
Fecal boli incidents, locomotor time 10.20.20.30.5-0.5-0.4
Change in fecal boli incidents, locomotor task1.71.62.8-0.91.01.7
Time >=10cm from walls, locomotor time 11.51.53.7-0.60.71.9
Bouts of movement, locomotor time 12.32.63.9-2.01.90.5
Total resting periods, locomotor time 11.82.02.9-1.71.60.6
Rest time, locomotor task time 11.51.62.0-1.41.40.9
Distance moved, locomotor task time 10.30.30.40.5-0.5-0.6
Vertical activity count, locomotor time 11.21.21.61.3-1.2-0.6
Time >=10cm from walls, locomotor time 20.60.61.8-0.00.11.3
Bouts of movement, locomotor time 20.70.81.1-1.00.9-0.6
Total resting periods, locomotor time 20.70.81.0-1.00.9-0.6
Rest time, locomotor task time 20.00.10.1-0.20.1-0.3
Distance moved, locomotor task time 20.00.00.1-0.20.20.0
Vertical activity count, locomotor time 21.71.92.11.4-1.4-1.2
Weight adjusted by age0.91.01.31.2-1.1-0.5
Seeking ratio, delayed vs. immediate footshock6.97.810.6-2.52.63.3
Locomotion in novel chamber1.01.21.61.2-1.2-0.7
Locomotion in novel chamber post-restriction0.00.00.1-0.10.1-0.3
Progressive ratio1.61.92.5-1.61.60.9
Food seeking constrained by brief footshock3.54.34.92.2-2.2-1.7
Seeking ratio, punishment vs. effort4.96.07.12.7-2.7-2.0
Run reversals in cocaine runway, females0.10.10.10.3-0.3-0.2
Run reversals in cocaine runway, males3.33.23.41.8-1.8-1.7
Latency to leave start box in cocaine runway0.30.30.6-0.40.40.8
Latency to leave start box in cocaine runway, F1.82.03.5-1.11.11.9
Latency to leave start box in cocaine runway, M2.22.12.71.3-1.4-1.6
Cd content in liver0.20.20.4-0.40.3-0.6
Co content in liver0.20.30.7-0.30.3-0.8
Cu content in liver4.75.77.0-2.22.32.6
Fe content in liver0.70.91.31.1-1.00.4
K content in liver0.80.81.1-1.01.00.5
Mg content in liver0.10.10.2-0.40.40.4
Mn content in liver0.50.61.10.6-0.6-1.0
Na content in liver1.41.51.6-1.21.31.2
Rb content in liver0.10.10.1-0.40.3-0.2
Se content in liver0.20.30.4-0.60.60.4
Sr content in liver0.90.81.00.9-0.9-1.0
Zn content in liver2.02.22.3-1.51.51.4