Lgals12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose intron excision ratio chr1:204834342:204836046 0.05 0.03 1.5e-03 0.03 0.02 0.01 0.02 7.3e-04 6.4e-03 1.6e-02 2.6e-03
2 Adipose intron excision ratio chr1:204834400:204836046 0.04 0.03 3.9e-03 0.02 0.01 0.01 0.02 1.0e-03 9.9e-03 2.9e-02 2.8e-03
3 Adipose mRNA stability ENSRNOG00000021207 0.07 0.04 9.1e-05 0.01 0.03 0.02 0.02 7.0e-02 6.1e-04 3.1e-03 1.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.20.61.7-0.20.21.3
BMI without tail0.20.50.6-0.80.80.4
Body weight0.62.67.1-0.50.52.7
Epididymis fat weight0.10.20.5-0.00.0-0.7
Glucose0.81.23.6-0.20.2-1.9
Heart weight1.82.64.0-1.41.4-2.0
Left kidney weight0.10.20.30.5-0.50.4
Right kidney weight0.51.51.51.2-1.21.2
Tail length0.30.81.6-0.60.61.3
Length with tail0.52.05.8-0.30.32.4
Length without tail0.51.13.2-0.10.11.8
Liver weight, left0.61.01.1-1.01.0-1.0
Liver weight, right1.22.12.6-1.61.6-1.0
Parametrial fat weight0.61.13.3-0.20.2-1.8
Retroperitoneal fat weight1.03.28.7-0.70.7-2.9
Intraocular pressure1.92.73.51.9-1.91.0
Extensor digitorum longus weight1.66.318.10.6-0.64.3
Soleus weight1.03.07.9-0.80.8-2.8
Tibialis anterior weight3.211.129.91.3-1.35.5
Tibia length3.59.811.43.0-3.03.4
Number of licking bursts0.10.10.10.2-0.20.3
Food consumed during 24 hour testing period0.30.40.50.7-0.70.6
Times rat made contact with spout0.30.30.5-0.70.70.0
Mean time between licks in bursts2.33.34.7-2.22.2-0.6
Mean num. licks in bursts0.30.40.5-0.70.7-0.5
Std. dev. time between licks in bursts2.73.23.8-2.02.0-1.4
Water consumed over 24 hours0.20.20.5-0.30.30.7
Indifference point 0 sec0.10.20.60.2-0.20.8
Indifference point AUC3.54.26.71.7-1.72.6
Indifference point function ln k7.210.315.0-2.82.8-3.9
Indifference point function log k7.210.315.0-2.82.8-3.9
Delay discounting total patch changes 0 sec0.10.10.3-0.30.30.5
Delay discounting total patch changes 12 sec2.63.48.80.9-0.93.0
Delay discounting total patch changes 18 sec1.01.32.10.9-0.91.4
Delay discounting total patch changes 24 sec2.22.77.60.5-0.52.8
Delay discounting total patch changes 6 sec0.20.30.6-0.30.30.8
Delay discounting time to switch 0 sec0.71.01.11.1-1.10.9
Delay discounting water rate 0 sec0.40.60.9-0.70.7-0.9
Delay discounting water rate 12 sec4.16.16.6-2.42.4-2.6
Delay discounting water rate 18 sec3.54.64.7-2.22.2-2.1
Delay discounting water rate 24 sec1.62.33.3-1.31.3-1.8
Delay discounting water rate 6 sec3.14.54.7-2.22.2-2.0
Locomotor activity2.23.53.5-1.91.9-1.8
Locomotor testing distance3.76.26.5-2.52.5-2.4
Locomotor testing rearing2.23.43.6-1.81.8-1.9
Light reinforcement 10.00.00.10.2-0.20.2
Light reinforcement 23.44.56.12.5-2.51.2
Reaction time number correct0.20.30.5-0.40.40.7
Reaction time mean minus median3.44.44.72.2-2.21.9
Reaction time mean minus median AUC1.21.61.61.3-1.31.3
Reaction time num false alarms3.44.75.5-2.32.3-1.8
Reaction time num false alarms AUC2.73.84.9-2.22.2-1.3
Reaction time trials correct on left0.20.30.5-0.40.40.7
Reaction time trials on left0.20.30.5-0.40.40.7
Reaction time mean1.21.62.11.5-1.50.8
Reaction time mean AUC1.21.62.21.5-1.50.7
Median of all reaction times0.60.81.01.0-1.00.5
Reaction time omissions0.00.10.10.1-0.10.3
Reaction time false alarm rate2.13.03.2-1.81.8-1.6
Reaction time premature initiation rate1.62.12.8-1.71.70.8
Reaction time premature initiations1.72.52.8-1.71.71.3
Std. dev. reaction times1.52.12.71.6-1.61.0
Reaction time trials completed0.20.30.5-0.40.40.7
Reaction time trials AUC0.20.30.3-0.50.50.5
Social response proportion0.00.10.1-0.10.10.4
Social responses0.10.20.2-0.50.50.3
Social time0.20.30.4-0.70.7-0.1
Conditioned locomotion0.10.10.1-0.40.40.4
Cocaine response after cond. corrected2.93.34.2-1.71.7-2.0
Cocaine response after cond. not corrected1.92.12.8-1.41.4-1.7
Cocaine response before conditioning1.61.92.41.3-1.31.5
Saline control response0.60.71.7-0.50.51.3
Condit. Reinf. active minus inactive responses1.11.31.91.4-1.40.4
Condit. Reinf. active-inactive response ratio3.33.55.02.2-2.20.5
Condit. Reinf. active responses0.20.30.30.5-0.50.5
Condit. Reinf. inactive responses1.31.62.4-1.61.6-0.4
Condit. Reinf. lever presses1.42.03.11.2-1.21.8
Condit. Reinf. lever reinforcers received0.50.70.80.8-0.80.9
Pavlov. Cond. lever latency0.60.81.3-0.80.8-1.1
Pavlov. Cond. magazine entry latency1.82.15.40.7-0.72.3
Pavlov. Cond. change in total contacts3.14.46.01.9-1.92.5
Pavlov. Cond. index score2.73.56.21.5-1.52.5
Pavlov. Cond. latency score2.53.25.41.5-1.52.3
Pavlov. Cond. lever contacts0.71.01.60.8-0.81.3
Pavlov. Cond. magazine entry number4.04.910.9-1.41.4-3.3
Pavlov. Cond. intertrial magazine entries0.30.41.00.2-0.2-1.0
Pavlov. Cond. lever-magazine prob. diff.2.73.56.51.4-1.42.5
Pavlov. Cond. response bias1.42.03.91.0-1.02.0
Conditioned reinforcement - actives1.51.52.21.5-1.5-0.3
Conditioned reinforcement - inactives1.11.31.91.4-1.4-0.2
Conditioned locomotion0.60.71.80.4-0.4-1.3
Intermittent access intake day 1-15 change2.12.02.91.7-1.70.5
Intermittent access intake escalation1.71.72.31.5-1.50.6
Intermittent access intake escalation 22.62.63.01.7-1.71.3
Intermitt. access day 1 inactive lever presses0.40.51.10.4-0.4-1.0
Intermitt. access day 15 inactive lever presses1.21.31.81.3-1.30.7
Intermitt. access escalation Index2.32.02.1-1.51.5-1.3
Intermittent access day 1 total infusions0.91.03.0-0.00.0-1.7
Intermittent access day 15 total infusions1.41.51.61.3-1.3-1.2
Intermittent access terminal intake (last 3 days)1.81.92.91.7-1.7-0.2
Intermittent access total infusions0.90.91.11.0-1.0-0.8
Intermittent access day 1 locomotion1.21.32.7-0.70.7-1.6
Intermittent access day 15 total locomotion0.50.60.80.9-0.9-0.3
Intermittent access total locomotion0.91.01.41.2-1.2-0.5
Intermittent access standard deviation0.80.81.21.1-1.1-0.1
Cocaine induced anxiety0.80.91.01.0-1.00.8
Post-drug Anxiety2.12.42.41.5-1.51.5
Baseline Anxiety0.40.41.0-0.30.31.0
Lifetime Intake0.50.51.50.3-0.3-1.2
Incentive Sensitization - Responses0.90.91.21.1-1.10.7
Incentive Sensitization - Breakpoint1.01.01.31.2-1.20.6
Progressive ratio test 1 active lever presses0.60.61.60.3-0.3-1.3
Progressive ratio test 1 breakpoint0.60.71.70.4-0.4-1.3
Progressive ratio test 1 inactive lever presses0.40.40.5-0.70.7-0.5
Progressive ratio test 2 active lever presses1.01.01.21.1-1.1-0.8
Progressive ratio test 2 breakpoint1.11.21.21.1-1.1-1.0
Progressive ratio test 2 inactive lever presses0.81.01.31.2-1.2-0.5
Total sessions with >9 infusions1.51.63.7-0.80.8-1.9
Short access day 1 total inactive lever presses1.01.12.4-0.70.7-1.6
Short access day 10 total inactive lever presses3.13.55.6-1.51.5-2.4
Short access day 1 total infusions1.21.22.6-0.80.8-1.6
Short access day 10 total infusions0.50.51.4-0.30.3-1.2
Short access total infusions1.11.22.3-0.80.8-1.5
Short access day 1 locomotion0.50.60.7-0.70.7-0.8
Short access day 10 total locomotion0.10.10.3-0.20.2-0.6
Short access total locomotion0.30.30.4-0.60.6-0.6
Compulsive drug intake3.23.24.8-2.22.20.1
One hour access (0.3 mA shock)1.11.32.90.7-0.7-1.7
One hour access (shock baseline)3.13.64.72.2-2.2-1.1
Number of responses in last shaping day1.01.01.4-1.21.2-0.6
Context. condit. distance diff. score0.60.71.5-0.60.6-1.2
Locomotion velocity, session 10.80.81.0-0.90.9-1.0
Locomotion distance, session 10.20.30.4-0.60.6-0.3
Locomotion velocity, session 20.40.51.50.1-0.11.2
Locomotion distance, session 20.50.81.0-1.01.0-0.5
Locomotion velocity, session 30.20.20.2-0.40.4-0.5
Locomotion distance, session 30.60.70.9-1.01.0-0.4
Stereotopy head waving bouts, day 30.60.81.4-0.70.7-1.2
Stereotopy head waving duration, day 30.20.20.70.1-0.1-0.8
Locomotion velocity, session 70.10.10.3-0.20.2-0.5
Locomotion distance, session 71.41.81.8-1.31.3-1.3
Stereotopy head waving bouts, day 71.51.72.21.5-1.50.8
Stereotopy head waving duration, day 72.42.93.71.6-1.61.9
Locomotion velocity, session 80.70.90.9-1.01.0-0.9
Locomotion distance, session 80.30.51.2-0.30.3-1.1
Degree of sensitization distance0.20.20.4-0.30.3-0.7
Degree of sensitization stereotypy2.62.92.91.7-1.71.7
Condit. Reinf. active minus inactive responses0.50.51.10.5-0.51.0
Condit. Reinf. active-inactive response ratio0.20.30.40.4-0.40.7
Condit. Reinf. active responses1.01.21.61.0-1.01.3
Condit. Reinf. inactive responses0.50.50.70.8-0.80.5
Incentive salience index mean0.50.61.10.5-0.51.1
Condit. Reinf. lever presses0.40.60.90.7-0.71.0
Time in familiar zone, hab. session 10.30.20.3-0.60.6-0.2
Time in novel zone, hab. session 10.90.91.8-0.60.6-1.3
Total zone transitions, hab. session 10.10.10.20.1-0.10.4
Total locomotion distance, hab. session 10.10.10.3-0.00.0-0.5
Locomotion velocity, hab. session 10.00.00.00.1-0.10.0
Time in familiar zone, hab. session 22.22.32.8-1.71.7-1.1
Time in novel zone, hab. session 20.80.81.01.0-1.00.8
Total zone transitions, hab. session 20.20.30.4-0.60.60.3
Total locomotion distance, hab. session 20.50.70.9-0.90.9-0.6
Locomotion velocity, hab. session 20.30.40.4-0.60.6-0.6
Novel to familiar place preference ratio2.82.94.21.5-1.52.1
Novelty place preference2.42.53.11.5-1.51.8
Time in novel zone, NPP test1.81.92.71.3-1.31.6
Total zone transitions, NPP test0.10.20.50.0-0.00.7
Total locomotion distance, NPP test0.40.60.7-0.80.8-0.7
Locomotion velocity, NPP test0.20.30.4-0.60.6-0.6
Pavlov. Cond. lever latency0.50.61.3-0.50.5-1.2
Pavlov. Cond. magazine entry latency0.70.91.70.7-0.71.3
Pavlov. Cond. change in total contacts1.92.02.11.5-1.51.3
Pavlov. Cond. index score0.70.91.60.7-0.71.2
Pavlov. Cond. latency score0.30.40.90.5-0.50.9
Pavlov. Cond. lever contacts0.10.10.20.0-0.00.4
Pavlov. Cond. magazine entry number1.41.72.6-1.11.1-1.6
Pavlov. Cond. intertrial magazine entries0.91.11.31.1-1.10.9
Pavlov. Cond. lever-magazine prob. diff.0.81.01.90.8-0.81.4
Pavlov. Cond. response bias0.91.01.90.8-0.81.4
Bone: apparent density0.40.60.70.9-0.90.6
Bone surface2.95.05.72.2-2.22.4
Bone volume2.84.85.42.3-2.31.9
Bone: connectivity density0.81.22.00.9-0.91.4
Bone: cortical apparent density0.10.10.4-0.10.10.6
Bone: cortical area1.01.52.31.1-1.11.5
Bone: cortical porosity0.00.00.00.1-0.1-0.0
Bone: cortical porosity0.00.00.10.0-0.00.2
Bone: cortical thickness0.71.13.1-0.40.41.8
Bone: cortical thickness1.11.32.0-1.41.4-0.2
Bone: cortical tissue density0.10.20.5-0.10.10.7
Bone: elastic displacement1.31.51.6-1.21.2-1.3
Bone: elastic work0.81.11.6-1.31.3-0.1
Bone: endosteal estimation0.40.81.40.7-0.7-1.2
Bone: endosteal perimeter0.91.82.31.5-1.5-0.8
Bone: final force1.11.83.31.0-1.01.8
Bone: final moment1.11.83.31.0-1.01.8
Bone: marrow area0.40.91.80.6-0.6-1.4
Bone: maximum diameter1.52.73.31.8-1.81.3
Bone: maximum force1.83.14.81.5-1.52.2
Bone: maximum moment1.62.74.41.4-1.42.1
Bone: minimum diameter0.30.50.50.7-0.7-0.6
Bone: periosteal estimation0.61.31.81.4-1.40.4
Bone: periosteal perimeter0.60.91.21.1-1.10.6
Bone: post-yield work1.72.43.51.9-1.90.4
Bone: stiffness1.32.12.81.3-1.31.7
Bone: tissue strength0.20.20.30.5-0.50.2
Bone: trabecular number1.21.92.01.4-1.41.3
Bone: trabecular spacing1.41.82.1-1.51.5-1.1
Bone: trabecular thickness0.50.60.91.0-1.0-0.0
Bone: trabecular tissue density0.81.23.40.2-0.2-1.8
Breakpoint value in progressive ratio session2.12.34.11.2-1.22.0
Distance traveled before self-admin2.52.64.21.4-1.42.1
Distance traveled after self-admin0.91.01.40.9-0.91.2
Delta time in closed arm before/after self-admin4.03.85.5-2.32.3-0.7
Delta time in open arm before/after self-admin4.03.84.41.9-1.92.1
Diff in mean of infusions in LGA sessions0.80.92.50.4-0.41.6
Extinction: sum of active levers before priming1.92.04.40.9-0.92.1
Active lever presses in extinction session 63.93.86.01.6-1.62.5
Delta distance traveled before/after self-admin0.90.91.2-0.90.9-1.1
Delta ambulatory time before/after self-admin1.61.72.2-1.21.2-1.5
Time in closed arm before self-admin1.21.31.81.3-1.30.6
Time in closed arm after self-admin1.31.31.8-1.01.0-1.3
Time in open arm before self-admin6.36.77.6-2.82.8-2.2
Time in open arm after self-admin0.10.10.1-0.30.30.3
Sum of active levers in priming session hrs 5-67.47.37.82.7-2.72.8
Time to tail flick, vehicle, before self-admin0.40.40.40.6-0.60.6
Time to tail flick, vehicle, after self-admin0.70.71.0-1.01.0-0.4
Time to tail flick, test, before self-admin1.11.11.4-1.21.2-0.8
Time to tail flick, test, after self-admin0.00.00.00.0-0.0-0.1
Delta time to tail flick, vehicle, before/after SA0.70.70.9-0.90.9-0.6
Delta time to tail flick, test, before/after SA1.31.11.21.0-1.01.1
Ambulatory time before self-admin4.14.35.51.9-1.92.4
Ambulatory time after self-admin1.31.51.61.3-1.31.0
Total heroin consumption1.61.94.80.7-0.72.2
Area under the delay curve0.40.40.5-0.70.7-0.6
Delay disc. indifference point, 0s delay2.02.12.7-1.41.4-1.6
Delay disc. indifference point, 16s delay0.10.10.10.4-0.40.3
Delay disc. indifference point, 2s delay0.20.20.5-0.10.1-0.7
Delay disc. indifference point, 24s delay0.90.81.1-1.11.1-0.5
Delay disc. indifference point, 4s delay1.61.72.2-1.51.5-0.8
Delay disc. indifference point, 8s delay1.61.71.9-1.31.3-1.4
Delay discount exponential model param0.40.40.50.7-0.70.6
Delay discount hyperbolic model param0.40.50.50.7-0.70.6
Fecal boli incidents, locomotor time 12.32.53.31.8-1.80.9
Change in fecal boli incidents, locomotor task4.34.14.3-2.02.0-2.1
Time >=10cm from walls, locomotor time 11.61.62.31.5-1.5-0.4
Bouts of movement, locomotor time 11.21.32.40.9-0.91.5
Total resting periods, locomotor time 11.51.62.61.1-1.11.6
Rest time, locomotor task time 10.20.20.70.0-0.0-0.8
Distance moved, locomotor task time 10.00.00.0-0.10.10.2
Vertical activity count, locomotor time 10.40.40.9-0.30.3-1.0
Time >=10cm from walls, locomotor time 21.51.62.11.4-1.40.8
Bouts of movement, locomotor time 20.60.61.80.2-0.21.3
Total resting periods, locomotor time 20.40.41.00.2-0.21.0
Rest time, locomotor task time 21.01.23.5-0.30.3-1.9
Distance moved, locomotor task time 20.40.41.10.3-0.31.1
Vertical activity count, locomotor time 20.60.71.0-1.01.0-0.4
Weight adjusted by age1.51.63.01.0-1.01.7
Seeking ratio, delayed vs. immediate footshock0.10.10.1-0.40.4-0.1
Locomotion in novel chamber1.21.52.11.4-1.4-0.5
Locomotion in novel chamber post-restriction0.50.61.60.4-0.4-1.2
Progressive ratio0.40.50.50.7-0.70.6
Food seeking constrained by brief footshock0.80.91.1-1.01.0-0.8
Seeking ratio, punishment vs. effort2.02.52.8-1.71.7-1.4
Run reversals in cocaine runway, females3.03.04.1-2.02.0-0.9
Run reversals in cocaine runway, males0.30.30.6-0.30.3-0.7
Latency to leave start box in cocaine runway0.10.20.40.1-0.1-0.6
Latency to leave start box in cocaine runway, F0.10.10.10.3-0.30.1
Latency to leave start box in cocaine runway, M0.90.92.6-0.10.1-1.6
Cd content in liver0.70.81.11.1-1.1-0.4
Co content in liver3.33.84.1-1.91.9-2.0
Cu content in liver0.00.00.1-0.10.10.2
Fe content in liver0.40.50.70.8-0.80.3
K content in liver0.30.30.70.4-0.40.8
Mg content in liver0.10.10.10.4-0.40.3
Mn content in liver3.03.55.11.6-1.62.3
Na content in liver0.80.91.40.8-0.81.2
Rb content in liver1.01.22.7-0.70.7-1.6
Se content in liver4.25.16.22.5-2.51.7
Sr content in liver2.82.66.20.9-0.92.5
Zn content in liver1.31.54.00.4-0.42.0