ENSRNOG00000021018

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000021018 0.26 0.1 1.4e-09 0.01 0.05 0.04 0.03 8.3e-03 6.2e-06 1.2e-05 9.8e-05
2 Brain gene expression ENSRNOG00000021018 0.05 0.04 2.2e-04 0.02 0.04 0.03 0.03 5.5e-03 2.1e-04 4.2e-04 4.2e-04
3 Eye gene expression ENSRNOG00000021018 0.77 0.18 6.7e-07 0.21 0.18 0.19 0.2 4.1e-04 1.1e-03 6.5e-04 4.8e-04
4 PL gene expression ENSRNOG00000021018 0.06 0.04 5.7e-04 0.03 0.02 0.02 0.02 5.1e-03 1.7e-02 1.3e-02 6.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.24.08.4-0.7-1.3-2.9-2.3
BMI without tail1.02.12.8-1.2-1.2-1.7-1.6
Body weight2.611.018.0-1.8-3.1-4.2-3.7
Epididymis fat weight3.17.28.62.32.92.52.9
Glucose2.33.54.91.62.21.71.9
Heart weight2.84.16.00.82.12.52.3
Left kidney weight0.82.22.51.61.61.31.4
Right kidney weight0.51.33.41.91.10.40.7
Tail length1.23.55.2-2.0-2.3-1.5-1.7
Length with tail1.97.09.1-1.8-3.0-3.0-2.7
Length without tail1.53.25.7-0.8-1.8-2.4-1.8
Liver weight, left0.10.10.20.30.40.20.5
Liver weight, right0.10.10.2-0.30.20.20.4
Parametrial fat weight2.75.26.82.12.62.22.3
Retroperitoneal fat weight5.919.523.43.44.84.54.8
Intraocular pressure1.21.73.81.91.31.10.6
Extensor digitorum longus weight6.325.336.1-2.9-4.9-6.0-5.7
Soleus weight3.610.513.42.03.43.73.6
Tibialis anterior weight9.231.846.1-2.8-5.6-6.8-6.4
Tibia length0.72.13.11.5-0.7-1.8-1.6
Number of licking bursts0.20.20.50.1-0.4-0.7-0.5
Food consumed during 24 hour testing period0.10.10.20.4-0.2-0.4-0.2
Times rat made contact with spout0.91.01.6-1.3-1.1-0.8-0.8
Mean time between licks in bursts1.41.94.0-2.0-1.4-1.0-0.8
Mean num. licks in bursts0.20.20.4-0.6-0.00.50.3
Std. dev. time between licks in bursts0.50.51.8-1.4-0.40.20.3
Water consumed over 24 hours1.31.52.1-1.2-1.4-1.1-1.1
Indifference point 0 sec0.00.00.10.20.30.20.2
Indifference point AUC2.83.35.2-0.5-1.8-2.3-2.1
Indifference point function ln k6.18.614.40.52.83.83.4
Indifference point function log k6.18.614.40.52.83.83.4
Delay discounting total patch changes 0 sec0.00.00.1-0.2-0.00.00.1
Delay discounting total patch changes 12 sec3.85.17.8-1.1-2.3-2.8-2.5
Delay discounting total patch changes 18 sec0.40.61.10.2-0.5-1.1-1.0
Delay discounting total patch changes 24 sec2.53.14.4-0.9-1.8-2.1-2.0
Delay discounting total patch changes 6 sec0.81.21.9-0.9-1.1-1.4-1.0
Delay discounting time to switch 0 sec0.71.12.90.3-0.6-1.7-1.1
Delay discounting water rate 0 sec2.23.56.30.91.82.51.9
Delay discounting water rate 12 sec4.77.114.70.22.33.82.9
Delay discounting water rate 18 sec2.02.65.4-0.11.52.31.7
Delay discounting water rate 24 sec2.33.16.00.51.72.51.8
Delay discounting water rate 6 sec1.92.85.9-0.21.52.41.7
Locomotor activity0.91.52.6-0.40.91.61.5
Locomotor testing distance1.32.23.8-0.81.02.01.8
Locomotor testing rearing1.32.04.1-0.60.92.01.7
Light reinforcement 10.10.10.2-0.20.10.40.5
Light reinforcement 22.02.64.82.21.71.11.3
Reaction time number correct0.30.50.7-0.5-0.7-0.7-0.8
Reaction time mean minus median2.12.74.70.2-1.3-2.2-2.1
Reaction time mean minus median AUC1.21.62.60.1-1.1-1.6-1.6
Reaction time num false alarms0.40.61.8-1.3-0.10.60.5
Reaction time num false alarms AUC0.60.92.8-1.7-0.7-0.1-0.1
Reaction time trials correct on left0.30.50.7-0.5-0.7-0.7-0.8
Reaction time trials on left0.40.60.9-0.5-0.8-0.8-0.9
Reaction time mean0.20.20.70.90.1-0.3-0.3
Reaction time mean AUC0.20.30.91.00.2-0.2-0.3
Median of all reaction times0.20.30.90.90.50.20.2
Reaction time omissions1.21.73.2-0.5-1.2-1.4-1.8
Reaction time false alarm rate0.30.51.2-1.1-0.00.60.7
Reaction time premature initiation rate4.35.87.6-2.8-2.6-2.0-2.2
Reaction time premature initiations6.08.610.0-3.0-3.2-2.7-2.9
Std. dev. reaction times0.60.81.40.5-0.6-1.2-1.2
Reaction time trials completed0.40.60.9-0.5-0.8-0.8-0.9
Reaction time trials AUC0.30.40.5-0.5-0.7-0.6-0.7
Social response proportion0.50.61.1-0.0-0.8-1.0-0.8
Social responses0.20.30.5-0.5-0.7-0.5-0.3
Social time0.40.50.8-0.7-0.9-0.6-0.5
Conditioned locomotion1.51.82.5-0.9-1.3-1.4-1.6
Cocaine response after cond. corrected1.11.22.0-0.21.01.41.3
Cocaine response after cond. not corrected0.80.91.6-0.10.91.31.1
Cocaine response before conditioning0.50.61.20.2-0.6-0.9-1.1
Saline control response4.05.36.5-1.8-2.4-2.6-2.4
Condit. Reinf. active minus inactive responses0.50.61.51.20.90.50.0
Condit. Reinf. active-inactive response ratio2.32.45.32.31.80.90.5
Condit. Reinf. active responses0.10.10.20.40.1-0.1-0.3
Condit. Reinf. inactive responses0.70.91.8-1.3-1.1-0.6-0.4
Condit. Reinf. lever presses1.31.83.20.5-0.9-1.8-1.7
Condit. Reinf. lever reinforcers received0.20.20.60.3-0.2-0.5-0.8
Pavlov. Cond. lever latency0.30.40.7-0.70.20.90.6
Pavlov. Cond. magazine entry latency2.63.04.5-0.9-1.8-2.1-1.9
Pavlov. Cond. change in total contacts1.21.72.61.0-0.6-1.6-1.6
Pavlov. Cond. index score1.41.83.40.3-1.1-1.8-1.6
Pavlov. Cond. latency score1.01.32.60.4-0.8-1.6-1.3
Pavlov. Cond. lever contacts0.30.40.80.6-0.4-0.9-0.6
Pavlov. Cond. magazine entry number4.65.78.90.82.33.02.8
Pavlov. Cond. intertrial magazine entries1.11.41.90.81.21.41.2
Pavlov. Cond. lever-magazine prob. diff.1.72.24.10.0-1.3-2.0-1.8
Pavlov. Cond. response bias1.11.52.90.2-1.1-1.7-1.4
Conditioned reinforcement - actives0.90.92.41.50.90.50.3
Conditioned reinforcement - inactives6.77.68.42.72.92.92.6
Conditioned locomotion7.59.010.92.53.23.32.9
Intermittent access intake day 1-15 change0.90.91.81.30.90.80.5
Intermittent access intake escalation0.80.81.51.20.90.80.4
Intermittent access intake escalation 20.30.31.01.00.40.4-0.2
Intermitt. access day 1 inactive lever presses2.93.14.51.31.71.82.1
Intermitt. access day 15 inactive lever presses4.24.65.02.22.21.92.2
Intermitt. access escalation Index2.62.33.90.11.41.82.0
Intermittent access day 1 total infusions7.38.311.42.63.42.62.9
Intermittent access day 15 total infusions10.311.514.93.43.93.33.0
Intermittent access terminal intake (last 3 days)8.69.412.33.43.52.72.6
Intermittent access total infusions7.17.810.83.03.32.42.4
Intermittent access day 1 locomotion4.64.76.61.42.62.12.4
Intermittent access day 15 total locomotion6.26.68.62.62.92.52.1
Intermittent access total locomotion9.010.214.03.33.72.82.8
Intermittent access standard deviation1.51.62.01.41.31.21.1
Cocaine induced anxiety0.10.10.50.70.2-0.0-0.1
Post-drug Anxiety0.90.91.60.4-0.7-1.2-1.3
Baseline Anxiety2.22.32.8-1.2-1.7-1.6-1.5
Lifetime Intake5.76.49.12.53.02.32.2
Incentive Sensitization - Responses1.11.12.01.41.20.80.7
Incentive Sensitization - Breakpoint1.51.52.51.61.41.00.8
Progressive ratio test 1 active lever presses3.43.54.31.72.11.91.9
Progressive ratio test 1 breakpoint3.03.13.71.61.91.81.7
Progressive ratio test 1 inactive lever presses1.21.32.00.51.11.31.4
Progressive ratio test 2 active lever presses6.16.48.22.72.92.42.1
Progressive ratio test 2 breakpoint6.57.28.72.63.02.72.4
Progressive ratio test 2 inactive lever presses10.612.214.73.33.83.43.4
Total sessions with >9 infusions2.12.33.51.01.91.51.6
Short access day 1 total inactive lever presses3.74.15.21.42.32.32.0
Short access day 10 total inactive lever presses2.83.15.10.21.52.22.3
Short access day 1 total infusions3.33.55.11.42.31.81.9
Short access day 10 total infusions2.72.94.81.72.21.41.5
Short access total infusions1.82.03.41.21.81.31.3
Short access day 1 locomotion2.42.64.01.02.01.81.4
Short access day 10 total locomotion1.92.13.01.01.71.51.5
Short access total locomotion1.51.62.50.81.61.31.2
Compulsive drug intake4.94.98.0-2.8-2.6-1.7-1.4
One hour access (0.3 mA shock)11.012.815.63.24.03.73.4
One hour access (shock baseline)12.013.917.94.14.23.52.9
Number of responses in last shaping day0.70.71.60.00.81.30.8
Context. condit. distance diff. score1.61.93.20.31.31.71.8
Locomotion velocity, session 10.20.30.7-0.8-0.4-0.2-0.3
Locomotion distance, session 10.30.40.6-0.8-0.6-0.7-0.6
Locomotion velocity, session 22.12.54.0-1.0-1.5-2.0-1.6
Locomotion distance, session 20.60.91.2-1.1-0.9-1.0-0.7
Locomotion velocity, session 30.30.30.60.30.80.40.6
Locomotion distance, session 30.00.00.1-0.10.20.20.2
Stereotopy head waving bouts, day 30.60.71.10.31.10.80.9
Stereotopy head waving duration, day 30.70.91.30.71.11.00.9
Locomotion velocity, session 70.70.81.40.71.20.80.9
Locomotion distance, session 70.10.20.3-0.60.20.40.4
Stereotopy head waving bouts, day 70.50.61.51.20.80.30.3
Stereotopy head waving duration, day 70.50.71.20.3-0.5-1.1-1.0
Locomotion velocity, session 81.21.42.0-1.4-1.3-1.2-0.7
Locomotion distance, session 80.30.40.60.30.80.50.7
Degree of sensitization distance0.10.10.1-0.00.40.20.3
Degree of sensitization stereotypy0.40.40.60.8-0.1-0.7-0.7
Condit. Reinf. active minus inactive responses0.20.20.4-0.5-0.4-0.3-0.6
Condit. Reinf. active-inactive response ratio0.10.10.2-0.4-0.4-0.1-0.4
Condit. Reinf. active responses0.00.00.10.30.2-0.0-0.2
Condit. Reinf. inactive responses0.50.61.11.00.90.30.5
Incentive salience index mean0.20.20.5-0.4-0.4-0.5-0.7
Condit. Reinf. lever presses0.20.20.40.3-0.1-0.6-0.6
Time in familiar zone, hab. session 10.40.40.50.50.70.50.7
Time in novel zone, hab. session 10.20.20.7-0.8-0.20.30.2
Total zone transitions, hab. session 10.60.81.4-0.5-0.8-1.0-1.2
Total locomotion distance, hab. session 10.30.50.80.60.90.60.5
Locomotion velocity, hab. session 10.10.10.20.30.40.20.0
Time in familiar zone, hab. session 20.50.51.6-1.3-0.50.10.3
Time in novel zone, hab. session 20.10.10.20.50.0-0.3-0.5
Total zone transitions, hab. session 20.91.21.8-0.7-0.9-1.3-1.2
Total locomotion distance, hab. session 20.00.00.1-0.10.40.00.2
Locomotion velocity, hab. session 20.20.20.60.40.80.20.4
Novel to familiar place preference ratio0.90.91.50.8-0.5-1.1-1.2
Novelty place preference0.40.50.70.8-0.2-0.7-0.8
Time in novel zone, NPP test0.30.30.40.6-0.2-0.6-0.6
Total zone transitions, NPP test1.72.53.8-0.8-1.5-2.0-1.8
Total locomotion distance, NPP test0.00.00.1-0.10.0-0.2-0.1
Locomotion velocity, NPP test0.00.00.1-0.1-0.0-0.3-0.3
Pavlov. Cond. lever latency0.10.20.4-0.00.20.60.6
Pavlov. Cond. magazine entry latency0.10.10.30.2-0.1-0.4-0.6
Pavlov. Cond. change in total contacts0.30.31.01.00.3-0.2-0.4
Pavlov. Cond. index score0.10.20.30.2-0.2-0.4-0.6
Pavlov. Cond. latency score0.00.10.10.1-0.1-0.3-0.3
Pavlov. Cond. lever contacts0.00.00.0-0.1-0.0-0.1-0.2
Pavlov. Cond. magazine entry number0.20.30.6-0.40.40.60.7
Pavlov. Cond. intertrial magazine entries0.50.60.90.80.81.00.6
Pavlov. Cond. lever-magazine prob. diff.0.30.30.60.1-0.4-0.7-0.8
Pavlov. Cond. response bias0.10.10.40.2-0.2-0.3-0.6
Bone: apparent density0.10.10.30.3-0.0-0.50.1
Bone surface2.03.56.90.5-1.4-2.6-2.2
Bone volume0.61.01.81.1-0.3-1.4-0.9
Bone: connectivity density0.91.43.0-0.3-1.1-1.7-1.1
Bone: cortical apparent density0.70.91.0-1.0-1.0-0.8-1.0
Bone: cortical area0.30.40.70.4-0.5-0.8-0.7
Bone: cortical porosity0.00.00.00.1-0.1-0.2-0.1
Bone: cortical porosity0.40.40.6-0.4-0.7-0.8-0.6
Bone: cortical thickness2.84.76.2-2.0-2.5-2.1-2.0
Bone: cortical thickness1.41.73.4-1.8-1.5-0.8-0.8
Bone: cortical tissue density0.81.11.3-1.1-1.1-0.9-1.1
Bone: elastic displacement0.70.81.6-0.80.21.30.9
Bone: elastic work1.41.83.6-1.9-1.5-0.8-0.9
Bone: endosteal estimation1.83.95.32.12.31.61.8
Bone: endosteal perimeter2.95.99.33.12.81.71.9
Bone: final force1.72.95.1-0.4-1.6-2.2-1.9
Bone: final moment1.52.44.3-0.4-1.5-2.1-1.8
Bone: marrow area1.83.95.32.12.31.61.8
Bone: maximum diameter0.40.72.31.50.4-0.3-0.2
Bone: maximum force1.62.85.80.2-1.2-2.4-2.0
Bone: maximum moment1.32.24.70.2-1.1-2.2-1.8
Bone: minimum diameter1.52.83.81.72.01.41.6
Bone: periosteal estimation0.61.23.01.71.20.40.6
Bone: periosteal perimeter0.30.51.71.30.6-0.10.1
Bone: post-yield work1.62.16.42.51.4-0.6-0.1
Bone: stiffness1.42.14.30.4-1.0-2.1-1.8
Bone: tissue strength0.10.10.40.60.2-0.2-0.1
Bone: trabecular number0.20.30.80.90.1-0.6-0.1
Bone: trabecular spacing0.20.30.9-0.9-0.10.40.0
Bone: trabecular thickness1.11.31.91.01.11.01.4
Bone: trabecular tissue density3.24.55.71.52.12.32.4
Breakpoint value in progressive ratio session2.12.33.9-0.5-1.6-2.0-1.6
Distance traveled before self-admin0.40.40.80.5-0.4-0.9-0.7
Distance traveled after self-admin0.10.10.20.4-0.2-0.5-0.4
Delta time in closed arm before/after self-admin0.80.82.7-1.6-0.6-0.0-0.1
Delta time in open arm before/after self-admin0.30.30.91.00.0-0.3-0.0
Diff in mean of infusions in LGA sessions0.40.40.6-0.4-0.8-0.6-0.8
Extinction: sum of active levers before priming3.13.15.2-0.8-1.8-2.3-1.8
Active lever presses in extinction session 61.61.52.60.1-1.3-1.6-1.4
Delta distance traveled before/after self-admin0.10.10.3-0.5-0.10.30.2
Delta ambulatory time before/after self-admin0.20.20.7-0.8-0.30.2-0.0
Time in closed arm before self-admin0.20.30.91.00.3-0.20.2
Time in closed arm after self-admin0.10.10.2-0.30.20.20.4
Time in open arm before self-admin0.91.03.3-1.8-0.30.80.0
Time in open arm after self-admin0.10.10.2-0.5-0.20.40.0
Sum of active levers in priming session hrs 5-61.51.42.61.1-0.6-1.2-1.6
Time to tail flick, vehicle, before self-admin0.40.40.90.1-0.3-0.7-0.9
Time to tail flick, vehicle, after self-admin1.51.62.0-1.4-1.2-1.2-1.1
Time to tail flick, test, before self-admin0.70.71.10.11.00.81.1
Time to tail flick, test, after self-admin0.20.20.9-0.1-0.2-0.1-0.9
Delta time to tail flick, vehicle, before/after SA0.60.61.1-1.1-0.8-0.6-0.5
Delta time to tail flick, test, before/after SA2.21.94.2-0.4-1.4-1.1-2.0
Ambulatory time before self-admin0.50.51.31.10.0-0.7-0.4
Ambulatory time after self-admin0.50.61.51.20.70.30.4
Total heroin consumption5.26.28.4-1.4-2.6-2.8-2.9
Area under the delay curve0.10.10.4-0.6-0.10.2-0.1
Delay disc. indifference point, 0s delay0.20.30.4-0.70.20.50.6
Delay disc. indifference point, 16s delay0.80.81.10.71.01.10.9
Delay disc. indifference point, 2s delay0.10.10.10.20.40.3-0.0
Delay disc. indifference point, 24s delay0.40.41.2-1.1-0.40.3-0.2
Delay disc. indifference point, 4s delay0.30.31.1-1.1-0.20.40.2
Delay disc. indifference point, 8s delay0.30.31.0-1.0-0.30.10.1
Delay discount exponential model param0.10.10.40.70.2-0.10.2
Delay discount hyperbolic model param0.10.10.40.70.2-0.10.3
Fecal boli incidents, locomotor time 10.70.72.51.60.5-0.4-0.2
Change in fecal boli incidents, locomotor task0.50.41.4-1.2-0.20.10.6
Time >=10cm from walls, locomotor time 12.62.75.12.31.90.71.1
Bouts of movement, locomotor time 11.82.03.3-0.7-1.5-1.3-1.8
Total resting periods, locomotor time 11.21.32.6-0.3-1.1-1.2-1.6
Rest time, locomotor task time 11.11.21.41.01.21.01.1
Distance moved, locomotor task time 10.00.00.0-0.2-0.1-0.1-0.2
Vertical activity count, locomotor time 11.11.22.00.51.11.41.1
Time >=10cm from walls, locomotor time 20.20.20.70.90.2-0.2-0.1
Bouts of movement, locomotor time 20.50.60.9-0.6-0.9-0.7-0.8
Total resting periods, locomotor time 20.20.20.4-0.4-0.6-0.4-0.4
Rest time, locomotor task time 22.73.14.81.31.81.62.2
Distance moved, locomotor task time 21.21.42.2-0.8-1.2-1.2-1.5
Vertical activity count, locomotor time 20.30.31.0-1.0-0.50.2-0.3
Weight adjusted by age2.12.35.1-0.3-1.3-1.5-2.3
Seeking ratio, delayed vs. immediate footshock0.00.00.1-0.20.20.20.2
Locomotion in novel chamber6.27.69.12.93.02.52.5
Locomotion in novel chamber post-restriction3.44.15.61.62.12.02.4
Progressive ratio1.01.22.8-0.2-0.8-1.7-1.1
Food seeking constrained by brief footshock0.40.51.4-1.2-0.8-0.30.1
Seeking ratio, punishment vs. effort1.11.32.6-0.70.51.61.3
Run reversals in cocaine runway, females0.70.72.1-1.4-0.6-0.6-0.4
Run reversals in cocaine runway, males0.20.20.40.00.20.50.6
Latency to leave start box in cocaine runway0.20.20.40.50.60.20.6
Latency to leave start box in cocaine runway, F0.00.00.00.10.1-0.00.0
Latency to leave start box in cocaine runway, M0.30.20.50.40.50.20.7
Cd content in liver1.51.72.21.51.31.21.2
Co content in liver0.80.91.6-1.2-0.01.30.9
Cu content in liver0.20.20.4-0.4-0.6-0.5-0.2
Fe content in liver0.10.10.30.2-0.1-0.3-0.5
K content in liver0.90.91.8-0.4-0.8-1.3-1.0
Mg content in liver0.00.00.10.00.2-0.3-0.1
Mn content in liver1.82.03.50.1-1.1-1.9-1.8
Na content in liver0.80.91.50.1-0.8-1.2-1.2
Rb content in liver1.31.72.60.51.31.41.6
Se content in liver0.70.82.61.60.80.10.4
Sr content in liver3.43.14.1-0.9-1.9-1.9-2.0
Zn content in liver0.91.01.4-0.6-1.0-1.2-1.0