Elp6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000020847 0.06 0.06 2.1e-03 0.03 0.03 0.02 0.02 6.7e-03 9.8e-03 2.0e-02 2.2e-02
2 Brain isoform ratio ENSRNOT00000028288 0.03 0.03 3.7e-03 0.02 0.02 0.01 0.01 8.6e-03 4.4e-03 7.7e-02 1.5e-02
3 Brain isoform ratio ENSRNOT00000107416 0.03 0.03 3.3e-03 0.02 0.02 0 0.01 7.9e-03 4.1e-03 2.0e-01 1.5e-02
4 NAcc intron excision ratio chr8:110290154:110293812 0.05 0.05 1.6e-03 0.04 0.03 0.03 0.03 1.3e-03 1.7e-03 2.0e-03 2.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.41.32.01.41.0-1.0-1.0
BMI without tail1.83.74.22.01.9-1.9-1.8
Body weight6.527.629.65.45.3-5.3-5.0
Epididymis fat weight0.30.71.01.00.8-0.8-0.7
Glucose0.30.50.70.80.7-0.7-0.6
Heart weight2.53.64.22.11.9-1.9-1.7
Left kidney weight0.92.53.82.01.5-1.5-1.3
Right kidney weight0.20.61.01.00.7-0.7-0.7
Tail length6.920.721.74.54.7-4.7-4.4
Length with tail9.434.636.25.96.0-6.0-5.5
Length without tail6.414.114.63.83.8-3.8-3.6
Liver weight, left0.00.10.10.20.3-0.3-0.3
Liver weight, right1.42.32.41.51.5-1.5-1.5
Parametrial fat weight1.32.52.81.71.6-1.6-1.5
Retroperitoneal fat weight0.62.02.71.61.5-1.5-1.0
Intraocular pressure0.91.31.41.11.2-1.2-1.1
Extensor digitorum longus weight0.10.60.7-0.8-0.80.80.6
Soleus weight3.710.911.93.53.3-3.3-3.1
Tibialis anterior weight0.00.00.00.20.1-0.1-0.1
Tibia length6.819.221.14.64.4-4.4-4.1
Number of licking bursts0.20.30.4-0.6-0.50.50.5
Food consumed during 24 hour testing period1.51.82.11.41.3-1.3-1.3
Times rat made contact with spout0.60.70.90.90.8-0.8-0.9
Mean time between licks in bursts1.31.92.0-1.3-1.31.31.4
Mean num. licks in bursts0.91.11.31.20.9-0.9-1.1
Std. dev. time between licks in bursts5.05.96.4-2.5-2.42.42.5
Water consumed over 24 hours0.00.00.00.1-0.10.1-0.1
Indifference point 0 sec1.11.82.21.31.3-1.3-1.5
Indifference point AUC0.10.10.10.30.3-0.3-0.3
Indifference point function ln k0.20.30.7-0.3-0.60.60.8
Indifference point function log k0.20.30.7-0.3-0.60.60.8
Delay discounting total patch changes 0 sec1.32.12.51.41.4-1.4-1.6
Delay discounting total patch changes 12 sec1.01.41.51.11.2-1.2-1.2
Delay discounting total patch changes 18 sec2.33.03.51.61.8-1.8-1.9
Delay discounting total patch changes 24 sec2.93.73.81.92.0-2.0-1.9
Delay discounting total patch changes 6 sec0.20.30.30.50.5-0.5-0.6
Delay discounting time to switch 0 sec0.10.20.2-0.5-0.40.40.3
Delay discounting water rate 0 sec0.10.20.30.50.4-0.4-0.4
Delay discounting water rate 12 sec0.20.30.40.60.6-0.6-0.4
Delay discounting water rate 18 sec0.00.00.10.20.1-0.10.1
Delay discounting water rate 24 sec0.71.01.21.11.0-1.0-0.9
Delay discounting water rate 6 sec0.30.40.60.80.6-0.6-0.4
Locomotor activity5.58.89.02.83.0-3.0-3.0
Locomotor testing distance4.88.08.72.73.0-3.0-2.7
Locomotor testing rearing0.10.10.20.00.4-0.4-0.3
Light reinforcement 10.61.21.31.11.2-1.2-0.9
Light reinforcement 20.10.20.5-0.2-0.30.30.7
Reaction time number correct0.50.71.1-0.7-0.70.71.0
Reaction time mean minus median0.10.10.10.20.2-0.2-0.3
Reaction time mean minus median AUC0.20.30.40.50.5-0.5-0.6
Reaction time num false alarms0.30.50.7-0.8-0.60.60.7
Reaction time num false alarms AUC0.10.10.2-0.4-0.20.20.3
Reaction time trials correct on left0.50.71.1-0.7-0.70.71.0
Reaction time trials on left0.50.71.1-0.8-0.80.81.1
Reaction time mean0.00.00.00.00.0-0.00.0
Reaction time mean AUC0.00.00.0-0.1-0.00.00.1
Median of all reaction times0.00.00.0-0.00.0-0.00.1
Reaction time omissions0.20.20.3-0.6-0.50.50.3
Reaction time false alarm rate0.00.00.1-0.3-0.10.1-0.0
Reaction time premature initiation rate2.53.44.21.71.8-1.8-2.0
Reaction time premature initiations1.11.61.71.21.2-1.2-1.3
Std. dev. reaction times0.10.10.10.30.3-0.3-0.4
Reaction time trials completed0.50.71.1-0.8-0.80.81.1
Reaction time trials AUC0.60.91.4-0.9-0.90.91.2
Social response proportion0.60.60.70.70.8-0.8-0.8
Social responses0.40.50.70.70.7-0.7-0.8
Social time0.30.40.5-0.6-0.70.70.7
Conditioned locomotion2.93.43.7-1.9-1.91.91.8
Cocaine response after cond. corrected0.20.30.40.40.5-0.5-0.6
Cocaine response after cond. not corrected1.92.12.31.41.4-1.4-1.5
Cocaine response before conditioning1.21.51.81.41.2-1.2-1.2
Saline control response1.52.02.41.41.4-1.4-1.6
Condit. Reinf. active minus inactive responses2.12.62.71.71.6-1.6-1.6
Condit. Reinf. active-inactive response ratio1.81.91.91.41.3-1.3-1.4
Condit. Reinf. active responses1.92.72.91.71.6-1.6-1.7
Condit. Reinf. inactive responses0.00.00.0-0.1-0.10.1-0.0
Condit. Reinf. lever presses2.43.33.71.91.8-1.8-1.7
Condit. Reinf. lever reinforcers received2.12.93.21.71.7-1.7-1.8
Pavlov. Cond. lever latency0.30.50.5-0.7-0.70.70.6
Pavlov. Cond. magazine entry latency0.20.20.4-0.3-0.40.40.6
Pavlov. Cond. change in total contacts2.23.03.21.81.7-1.7-1.7
Pavlov. Cond. index score0.00.10.10.30.2-0.2-0.1
Pavlov. Cond. latency score0.00.00.10.30.2-0.20.0
Pavlov. Cond. lever contacts0.91.21.41.21.1-1.1-1.0
Pavlov. Cond. magazine entry number0.40.50.70.60.7-0.7-0.8
Pavlov. Cond. intertrial magazine entries0.40.60.9-0.9-0.70.70.6
Pavlov. Cond. lever-magazine prob. diff.0.00.00.10.30.2-0.2-0.0
Pavlov. Cond. response bias0.00.00.10.30.2-0.2-0.1
Conditioned reinforcement - actives0.40.40.5-0.6-0.70.70.5
Conditioned reinforcement - inactives1.01.21.3-1.1-1.01.01.2
Conditioned locomotion0.30.40.5-0.5-0.70.70.4
Intermittent access intake day 1-15 change0.60.60.7-0.7-0.80.80.8
Intermittent access intake escalation0.60.60.6-0.8-0.70.70.8
Intermittent access intake escalation 20.00.00.00.10.1-0.10.2
Intermitt. access day 1 inactive lever presses0.00.00.00.0-0.00.0-0.1
Intermitt. access day 15 inactive lever presses0.60.70.8-0.9-0.80.80.7
Intermitt. access escalation Index0.00.00.0-0.00.0-0.0-0.1
Intermittent access day 1 total infusions0.00.00.0-0.2-0.20.2-0.1
Intermittent access day 15 total infusions0.40.40.5-0.7-0.70.70.5
Intermittent access terminal intake (last 3 days)0.20.20.2-0.5-0.50.50.2
Intermittent access total infusions0.50.50.6-0.8-0.80.80.5
Intermittent access day 1 locomotion0.10.10.2-0.4-0.40.40.1
Intermittent access day 15 total locomotion0.70.81.0-0.9-0.80.81.0
Intermittent access total locomotion1.11.21.4-1.1-1.21.21.0
Intermittent access standard deviation0.10.10.10.40.4-0.4-0.4
Cocaine induced anxiety0.30.40.5-0.7-0.70.70.0
Post-drug Anxiety0.10.10.2-0.4-0.40.40.1
Baseline Anxiety0.40.41.0-0.6-0.50.41.0
Lifetime Intake0.40.40.5-0.6-0.70.70.6
Incentive Sensitization - Responses1.61.61.8-1.3-1.31.31.1
Incentive Sensitization - Breakpoint1.61.61.7-1.3-1.31.31.0
Progressive ratio test 1 active lever presses0.00.00.0-0.2-0.10.1-0.0
Progressive ratio test 1 breakpoint0.00.00.1-0.3-0.20.20.1
Progressive ratio test 1 inactive lever presses0.40.40.5-0.7-0.70.70.6
Progressive ratio test 2 active lever presses0.91.01.1-1.0-1.11.10.7
Progressive ratio test 2 breakpoint0.60.70.9-0.8-0.90.90.6
Progressive ratio test 2 inactive lever presses1.92.22.6-1.6-1.61.61.2
Total sessions with >9 infusions0.10.10.2-0.4-0.30.30.4
Short access day 1 total inactive lever presses4.95.57.1-2.2-2.22.22.7
Short access day 10 total inactive lever presses0.00.00.0-0.1-0.00.0-0.2
Short access day 1 total infusions1.01.11.2-1.0-1.01.01.1
Short access day 10 total infusions0.10.10.1-0.2-0.30.30.3
Short access total infusions0.70.70.9-0.8-0.80.81.0
Short access day 1 locomotion0.00.00.1-0.1-0.20.20.2
Short access day 10 total locomotion0.00.00.10.30.1-0.1-0.1
Short access total locomotion0.00.00.00.0-0.10.1-0.1
Compulsive drug intake0.10.10.3-0.2-0.10.10.5
One hour access (0.3 mA shock)0.20.20.3-0.5-0.50.50.5
One hour access (shock baseline)0.10.10.1-0.3-0.30.3-0.1
Number of responses in last shaping day0.80.81.0-1.0-0.90.90.7
Context. condit. distance diff. score0.00.00.0-0.00.0-0.0-0.0
Locomotion velocity, session 10.10.10.1-0.2-0.30.30.2
Locomotion distance, session 10.81.11.41.21.0-1.0-1.0
Locomotion velocity, session 20.30.30.3-0.5-0.60.60.6
Locomotion distance, session 20.00.00.0-0.0-0.20.20.2
Locomotion velocity, session 30.10.10.20.50.3-0.3-0.3
Locomotion distance, session 31.01.11.3-0.9-1.11.11.2
Stereotopy head waving bouts, day 30.00.00.00.10.2-0.2-0.2
Stereotopy head waving duration, day 30.20.20.30.30.5-0.5-0.5
Locomotion velocity, session 70.10.10.20.20.5-0.5-0.3
Locomotion distance, session 70.81.01.3-1.1-0.90.91.1
Stereotopy head waving bouts, day 70.00.00.1-0.1-0.20.20.2
Stereotopy head waving duration, day 70.30.30.40.70.6-0.6-0.5
Locomotion velocity, session 80.20.20.30.60.4-0.4-0.4
Locomotion distance, session 80.20.30.40.60.5-0.5-0.4
Degree of sensitization distance1.11.11.30.91.1-1.1-1.1
Degree of sensitization stereotypy0.10.10.10.30.2-0.2-0.2
Condit. Reinf. active minus inactive responses0.10.10.10.20.3-0.3-0.3
Condit. Reinf. active-inactive response ratio0.20.30.40.40.5-0.5-0.6
Condit. Reinf. active responses0.00.00.0-0.2-0.10.10.2
Condit. Reinf. inactive responses0.60.71.0-0.8-0.80.81.0
Incentive salience index mean0.00.10.1-0.2-0.30.30.2
Condit. Reinf. lever presses1.52.02.2-1.3-1.51.51.4
Time in familiar zone, hab. session 11.71.62.0-1.4-1.21.21.2
Time in novel zone, hab. session 10.90.91.11.00.9-0.9-1.0
Total zone transitions, hab. session 10.60.81.01.00.9-0.9-0.8
Total locomotion distance, hab. session 10.30.40.60.80.6-0.6-0.6
Locomotion velocity, hab. session 10.30.40.60.80.6-0.6-0.6
Time in familiar zone, hab. session 20.70.80.8-0.9-0.80.80.9
Time in novel zone, hab. session 20.00.10.10.20.2-0.2-0.3
Total zone transitions, hab. session 20.00.10.10.40.2-0.2-0.1
Total locomotion distance, hab. session 20.30.40.60.80.6-0.6-0.5
Locomotion velocity, hab. session 20.20.30.50.70.5-0.5-0.4
Novel to familiar place preference ratio0.70.70.80.90.9-0.9-0.7
Novelty place preference0.70.70.80.90.9-0.9-0.7
Time in novel zone, NPP test0.91.01.11.01.0-1.0-0.9
Total zone transitions, NPP test2.33.24.32.11.7-1.7-1.6
Total locomotion distance, NPP test1.11.52.11.51.2-1.2-1.1
Locomotion velocity, NPP test1.21.72.31.51.2-1.2-1.1
Pavlov. Cond. lever latency5.26.67.12.42.7-2.7-2.6
Pavlov. Cond. magazine entry latency6.78.79.1-2.9-3.03.02.8
Pavlov. Cond. change in total contacts1.92.02.1-1.4-1.41.41.3
Pavlov. Cond. index score6.68.58.9-2.8-3.03.02.8
Pavlov. Cond. latency score6.48.28.7-2.8-3.03.02.8
Pavlov. Cond. lever contacts2.93.53.9-1.7-2.02.01.8
Pavlov. Cond. magazine entry number7.89.810.13.13.2-3.2-3.0
Pavlov. Cond. intertrial magazine entries0.30.40.50.50.7-0.7-0.4
Pavlov. Cond. lever-magazine prob. diff.5.97.47.9-2.7-2.82.82.6
Pavlov. Cond. response bias7.28.99.3-2.9-3.03.02.9
Bone: apparent density0.00.00.00.20.2-0.20.1
Bone surface0.10.10.2-0.2-0.30.30.5
Bone volume0.00.00.1-0.0-0.10.10.4
Bone: connectivity density0.20.30.3-0.5-0.50.50.6
Bone: cortical apparent density0.20.30.3-0.5-0.50.50.5
Bone: cortical area0.20.30.3-0.6-0.50.50.5
Bone: cortical porosity0.00.00.1-0.3-0.20.20.1
Bone: cortical porosity0.20.20.3-0.6-0.40.40.3
Bone: cortical thickness0.10.10.10.30.3-0.3-0.2
Bone: cortical thickness0.00.00.00.00.0-0.00.1
Bone: cortical tissue density0.20.30.3-0.5-0.50.50.5
Bone: elastic displacement0.00.00.10.20.2-0.2-0.1
Bone: elastic work0.40.50.70.80.7-0.7-0.5
Bone: endosteal estimation0.00.10.10.10.3-0.3-0.3
Bone: endosteal perimeter1.22.42.5-1.6-1.61.61.5
Bone: final force0.81.31.31.11.2-1.2-1.1
Bone: final moment1.01.71.71.21.3-1.3-1.3
Bone: marrow area0.00.10.10.10.4-0.4-0.3
Bone: maximum diameter0.40.80.8-0.9-0.90.90.8
Bone: maximum force0.61.11.20.91.1-1.1-1.0
Bone: maximum moment0.71.21.31.01.2-1.2-1.1
Bone: minimum diameter0.50.91.0-1.0-0.90.91.0
Bone: periosteal estimation0.00.00.0-0.10.1-0.10.0
Bone: periosteal perimeter1.32.12.2-1.5-1.51.51.4
Bone: post-yield work0.00.00.00.10.2-0.2-0.1
Bone: stiffness0.10.20.20.30.5-0.5-0.5
Bone: tissue strength2.82.72.91.61.7-1.7-1.6
Bone: trabecular number0.61.01.3-0.9-0.90.91.1
Bone: trabecular spacing1.41.81.91.21.4-1.4-1.4
Bone: trabecular thickness0.00.00.10.40.2-0.20.0
Bone: trabecular tissue density0.30.40.40.60.6-0.6-0.6
Breakpoint value in progressive ratio session0.10.10.30.10.3-0.3-0.5
Distance traveled before self-admin0.00.00.1-0.20.0-0.00.2
Distance traveled after self-admin0.30.30.4-0.7-0.50.50.5
Delta time in closed arm before/after self-admin0.30.30.5-0.4-0.40.40.7
Delta time in open arm before/after self-admin0.20.20.30.40.5-0.5-0.4
Diff in mean of infusions in LGA sessions0.00.00.0-0.2-0.10.1-0.1
Extinction: sum of active levers before priming0.00.00.0-0.20.1-0.1-0.1
Active lever presses in extinction session 60.30.30.50.40.5-0.5-0.7
Delta distance traveled before/after self-admin0.10.10.1-0.4-0.40.40.1
Delta ambulatory time before/after self-admin0.30.30.50.40.5-0.5-0.7
Time in closed arm before self-admin1.61.82.11.41.3-1.3-1.3
Time in closed arm after self-admin0.00.00.00.20.1-0.10.1
Time in open arm before self-admin1.21.31.5-1.2-1.11.11.1
Time in open arm after self-admin0.20.20.3-0.5-0.40.40.5
Sum of active levers in priming session hrs 5-60.70.60.80.80.7-0.7-0.9
Time to tail flick, vehicle, before self-admin2.02.02.11.41.4-1.4-1.5
Time to tail flick, vehicle, after self-admin0.90.91.31.00.8-0.8-1.1
Time to tail flick, test, before self-admin0.10.10.30.50.3-0.3-0.3
Time to tail flick, test, after self-admin0.10.10.1-0.2-0.30.3-0.0
Delta time to tail flick, vehicle, before/after SA0.40.40.5-0.6-0.70.70.4
Delta time to tail flick, test, before/after SA0.40.40.5-0.7-0.60.60.4
Ambulatory time before self-admin0.20.20.3-0.4-0.30.30.5
Ambulatory time after self-admin0.00.10.1-0.4-0.10.10.2
Total heroin consumption1.01.21.41.01.2-1.2-1.1
Area under the delay curve2.02.12.3-1.5-1.51.51.3
Delay disc. indifference point, 0s delay0.00.00.0-0.2-0.20.20.2
Delay disc. indifference point, 16s delay1.01.01.0-1.0-1.01.00.9
Delay disc. indifference point, 2s delay0.20.30.3-0.6-0.50.50.3
Delay disc. indifference point, 24s delay0.80.80.8-0.9-0.90.90.9
Delay disc. indifference point, 4s delay2.02.12.4-1.6-1.51.51.2
Delay disc. indifference point, 8s delay2.02.12.3-1.5-1.51.51.3
Delay discount exponential model param2.32.52.81.71.6-1.6-1.4
Delay discount hyperbolic model param2.32.42.71.71.6-1.6-1.4
Fecal boli incidents, locomotor time 10.30.40.40.60.6-0.6-0.6
Change in fecal boli incidents, locomotor task0.00.00.00.10.1-0.1-0.1
Time >=10cm from walls, locomotor time 10.20.20.3-0.2-0.30.30.6
Bouts of movement, locomotor time 10.00.00.00.10.1-0.1-0.2
Total resting periods, locomotor time 10.00.00.00.10.1-0.1-0.1
Rest time, locomotor task time 10.70.80.9-0.9-0.80.81.0
Distance moved, locomotor task time 11.82.02.31.51.4-1.4-1.3
Vertical activity count, locomotor time 11.01.11.31.11.0-1.0-1.0
Time >=10cm from walls, locomotor time 21.41.51.71.31.3-1.3-1.1
Bouts of movement, locomotor time 20.00.00.0-0.2-0.00.00.0
Total resting periods, locomotor time 20.10.10.2-0.5-0.30.30.3
Rest time, locomotor task time 20.10.10.2-0.4-0.20.20.3
Distance moved, locomotor task time 21.21.42.01.41.1-1.1-1.0
Vertical activity count, locomotor time 20.10.10.30.50.3-0.3-0.2
Weight adjusted by age0.30.40.70.50.5-0.5-0.8
Seeking ratio, delayed vs. immediate footshock2.93.33.6-1.9-1.81.81.7
Locomotion in novel chamber0.20.20.2-0.4-0.50.50.4
Locomotion in novel chamber post-restriction0.70.81.11.00.9-0.9-0.6
Progressive ratio3.43.94.01.92.0-2.0-2.0
Food seeking constrained by brief footshock0.81.01.4-0.7-1.01.01.2
Seeking ratio, punishment vs. effort5.36.67.2-2.4-2.62.62.7
Run reversals in cocaine runway, females1.91.92.9-1.2-1.31.31.7
Run reversals in cocaine runway, males0.80.81.10.80.8-0.8-1.1
Latency to leave start box in cocaine runway0.50.50.70.80.6-0.6-0.8
Latency to leave start box in cocaine runway, F1.41.61.91.41.2-1.2-1.2
Latency to leave start box in cocaine runway, M0.20.20.3-0.4-0.50.50.3
Cd content in liver2.42.63.51.41.6-1.6-1.9
Co content in liver0.00.00.0-0.2-0.00.00.1
Cu content in liver4.04.85.32.12.2-2.2-2.3
Fe content in liver1.61.92.41.21.4-1.4-1.6
K content in liver0.80.81.11.00.9-0.9-0.8
Mg content in liver0.00.00.00.20.00.00.1
Mn content in liver0.60.70.91.00.8-0.8-0.7
Na content in liver0.40.40.50.50.6-0.6-0.7
Rb content in liver0.91.11.60.61.1-1.1-1.2
Se content in liver0.10.10.20.40.3-0.30.0
Sr content in liver0.00.00.10.30.1-0.10.2
Zn content in liver4.44.95.42.32.2-2.2-2.2