Pcnx3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000020742 0.15 0.07 6.4e-11 0.09 0.07 0.08 0.08 3.6e-10 1.9e-08 2.7e-09 3.9e-09
2 Adipose mRNA stability ENSRNOG00000020742 0.19 0.1 7.0e-03 -0 0 0.01 -0 8.8e-01 1.2e-01 1.9e-02 9.1e-01
3 BLA gene expression ENSRNOG00000020742 0.1 0.06 1.0e-03 0.05 0.04 0.04 0.05 1.0e-03 2.0e-03 3.1e-03 1.8e-03
4 Brain gene expression ENSRNOG00000020742 0.11 0.06 5.4e-07 0.09 0.07 0.06 0.08 8.6e-09 7.7e-07 8.2e-06 3.5e-08
5 Liver mRNA stability ENSRNOG00000020742 0.05 0.03 2.3e-04 0.02 0.02 0.02 0.01 3.1e-03 6.3e-03 4.8e-03 7.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4 5
BMI with tail6.721.730.95.30.04.75.3-5.6
BMI without tail3.26.89.53.10.02.63.1-2.9
Body weight2.08.315.73.00.02.93.0-4.0
Epididymis fat weight0.00.00.1-0.30.0-0.3-0.30.0
Glucose0.40.60.90.90.01.00.6-0.9
Heart weight0.10.10.2-0.30.0-0.5-0.30.5
Left kidney weight0.20.51.3-0.60.0-1.1-0.60.6
Right kidney weight0.41.12.3-1.00.0-1.5-1.30.6
Tail length0.41.22.1-1.40.0-1.2-1.30.9
Length with tail0.00.20.3-0.50.0-0.1-0.6-0.5
Length without tail0.20.41.50.20.00.70.1-1.2
Liver weight, left0.10.20.90.20.0-1.00.0-0.4
Liver weight, right0.10.21.1-0.00.0-0.20.0-1.0
Parametrial fat weight0.30.50.90.90.00.50.9-0.8
Retroperitoneal fat weight0.10.50.9-0.70.0-0.9-0.70.6
Intraocular pressure1.82.63.9-2.00.0-1.8-1.71.7
Extensor digitorum longus weight1.87.413.72.80.02.13.3-3.7
Soleus weight0.51.42.8-1.30.0-1.7-1.31.0
Tibialis anterior weight0.62.28.20.90.00.51.3-2.9
Tibia length0.10.30.8-0.70.0-0.2-0.9-0.5
Number of licking bursts0.00.10.10.20.00.40.2-0.1
Food consumed during 24 hour testing period0.91.12.2-1.50.0-0.8-1.11.1
Times rat made contact with spout0.40.51.00.70.01.00.90.2
Mean time between licks in bursts0.10.10.20.20.00.30.2-0.4
Mean num. licks in bursts0.10.10.30.10.00.20.30.5
Std. dev. time between licks in bursts0.10.10.5-0.20.0-0.7-0.3-0.0
Water consumed over 24 hours0.20.20.8-0.30.00.4-0.00.9
Indifference point 0 sec0.00.00.00.00.00.10.10.2
Indifference point AUC0.10.20.40.50.00.60.3-0.2
Indifference point function ln k0.81.12.6-1.00.0-1.6-1.00.9
Indifference point function log k0.81.12.6-1.00.0-1.6-1.00.9
Delay discounting total patch changes 0 sec0.00.10.2-0.30.0-0.3-0.20.4
Delay discounting total patch changes 12 sec0.91.32.11.30.01.41.4-0.8
Delay discounting total patch changes 18 sec0.30.50.90.80.00.90.7-0.5
Delay discounting total patch changes 24 sec0.10.10.3-0.10.00.50.2-0.2
Delay discounting total patch changes 6 sec0.50.71.30.80.01.11.0-0.8
Delay discounting time to switch 0 sec3.04.67.32.30.02.32.7-2.2
Delay discounting water rate 0 sec4.06.48.9-2.90.0-3.0-3.02.4
Delay discounting water rate 12 sec5.17.611.5-3.20.0-3.0-3.42.8
Delay discounting water rate 18 sec1.01.32.3-1.50.0-1.3-1.50.7
Delay discounting water rate 24 sec2.53.55.9-2.10.0-2.4-2.31.3
Delay discounting water rate 6 sec2.33.45.5-2.40.0-2.0-2.31.4
Locomotor activity1.21.93.2-1.70.0-1.5-1.81.2
Locomotor testing distance1.42.23.8-1.80.0-1.5-1.91.4
Locomotor testing rearing0.61.01.9-1.40.0-0.3-1.21.2
Light reinforcement 10.30.51.2-0.70.0-0.5-0.71.1
Light reinforcement 20.70.91.8-1.10.0-1.4-1.10.6
Reaction time number correct0.20.20.5-0.60.0-0.6-0.7-0.1
Reaction time mean minus median0.40.50.90.90.00.60.7-0.9
Reaction time mean minus median AUC0.00.00.10.20.0-0.2-0.1-0.4
Reaction time num false alarms0.10.20.5-0.30.0-0.7-0.40.2
Reaction time num false alarms AUC0.00.10.20.10.0-0.5-0.1-0.1
Reaction time trials correct on left0.20.20.5-0.60.0-0.6-0.7-0.1
Reaction time trials on left0.20.30.5-0.70.0-0.6-0.7-0.1
Reaction time mean0.10.10.30.10.0-0.5-0.40.6
Reaction time mean AUC0.10.10.20.30.0-0.4-0.20.5
Median of all reaction times0.10.10.40.10.0-0.4-0.30.6
Reaction time omissions0.10.10.30.60.00.30.3-0.2
Reaction time false alarm rate0.00.00.10.20.0-0.4-0.0-0.1
Reaction time premature initiation rate0.10.10.40.30.0-0.10.2-0.6
Reaction time premature initiations0.10.10.2-0.10.0-0.4-0.2-0.4
Std. dev. reaction times0.00.00.10.40.0-0.0-0.00.0
Reaction time trials completed0.20.30.5-0.70.0-0.6-0.7-0.1
Reaction time trials AUC0.10.20.4-0.60.0-0.5-0.6-0.2
Social response proportion0.20.20.50.50.00.70.4-0.4
Social responses0.10.10.3-0.50.00.0-0.3-0.0
Social time0.10.10.3-0.50.00.0-0.6-0.1
Conditioned locomotion0.20.20.80.10.00.20.4-0.9
Cocaine response after cond. corrected0.10.10.2-0.20.0-0.4-0.4-0.1
Cocaine response after cond. not corrected0.10.10.2-0.20.0-0.4-0.3-0.3
Cocaine response before conditioning0.00.00.10.10.0-0.10.3-0.1
Saline control response0.81.11.80.70.01.31.0-1.4
Condit. Reinf. active minus inactive responses0.10.10.5-0.00.00.7-0.00.0
Condit. Reinf. active-inactive response ratio0.10.10.40.10.00.3-0.3-0.6
Condit. Reinf. active responses0.50.62.50.50.01.60.70.0
Condit. Reinf. inactive responses0.81.02.60.80.01.61.30.1
Condit. Reinf. lever presses0.40.51.00.50.01.00.8-0.9
Condit. Reinf. lever reinforcers received0.40.52.10.40.01.50.60.1
Pavlov. Cond. lever latency0.10.20.7-0.20.0-0.4-0.40.8
Pavlov. Cond. magazine entry latency1.51.72.71.70.01.61.5-1.0
Pavlov. Cond. change in total contacts0.60.81.51.20.01.21.0-0.5
Pavlov. Cond. index score0.81.01.51.20.01.11.2-1.0
Pavlov. Cond. latency score0.81.01.41.20.01.01.2-1.1
Pavlov. Cond. lever contacts0.00.10.2-0.40.0-0.2-0.3-0.2
Pavlov. Cond. magazine entry number1.72.13.6-1.80.0-1.9-1.60.9
Pavlov. Cond. intertrial magazine entries0.30.40.7-0.80.0-0.8-0.70.3
Pavlov. Cond. lever-magazine prob. diff.0.91.21.81.30.01.21.4-1.0
Pavlov. Cond. response bias0.20.20.50.40.00.70.5-0.5
Conditioned reinforcement - actives0.40.40.8-0.90.0-0.6-0.80.4
Conditioned reinforcement - inactives2.42.74.9-1.80.0-1.6-1.72.2
Conditioned locomotion3.74.55.9-2.40.0-2.3-2.42.4
Intermittent access intake day 1-15 change1.61.52.2-1.50.0-1.3-1.51.3
Intermittent access intake escalation0.80.81.1-1.00.0-0.9-1.11.0
Intermittent access intake escalation 21.21.21.6-1.20.0-1.2-1.31.2
Intermitt. access day 1 inactive lever presses0.40.51.2-0.60.0-0.6-0.61.1
Intermitt. access day 15 inactive lever presses0.70.81.3-1.00.0-0.7-1.11.1
Intermitt. access escalation Index0.10.10.30.40.00.50.30.2
Intermittent access day 1 total infusions0.50.61.20.70.01.10.8-0.8
Intermittent access day 15 total infusions0.50.61.0-1.00.0-0.5-1.00.8
Intermittent access terminal intake (last 3 days)0.10.10.3-0.60.0-0.2-0.60.1
Intermittent access total infusions0.10.10.40.10.00.70.2-0.3
Intermittent access day 1 locomotion1.01.01.81.00.01.31.1-1.1
Intermittent access day 15 total locomotion0.20.30.5-0.60.0-0.2-0.60.7
Intermittent access total locomotion0.20.20.60.40.00.70.5-0.4
Intermittent access standard deviation0.80.91.5-1.20.0-0.8-1.11.0
Cocaine induced anxiety0.10.10.3-0.30.0-0.5-0.4-0.2
Post-drug Anxiety0.30.30.6-0.40.0-0.8-0.6-0.6
Baseline Anxiety0.10.10.40.20.0-0.00.1-0.6
Lifetime Intake0.30.30.80.40.00.90.5-0.5
Incentive Sensitization - Responses0.00.00.1-0.10.00.3-0.10.2
Incentive Sensitization - Breakpoint0.00.00.1-0.30.00.1-0.30.3
Progressive ratio test 1 active lever presses0.40.40.7-0.80.0-0.3-0.60.9
Progressive ratio test 1 breakpoint0.50.50.9-0.90.0-0.4-0.80.9
Progressive ratio test 1 inactive lever presses0.10.10.5-0.20.00.2-0.10.7
Progressive ratio test 2 active lever presses0.40.50.8-0.90.0-0.3-0.90.8
Progressive ratio test 2 breakpoint1.21.42.1-1.40.0-0.9-1.41.4
Progressive ratio test 2 inactive lever presses0.70.92.2-1.00.0-0.4-0.91.5
Total sessions with >9 infusions0.30.40.70.50.00.70.6-0.8
Short access day 1 total inactive lever presses0.10.20.5-0.30.0-0.2-0.30.7
Short access day 10 total inactive lever presses0.70.81.7-0.80.0-0.9-0.91.3
Short access day 1 total infusions0.70.81.40.90.01.21.1-0.6
Short access day 10 total infusions2.52.85.41.70.02.31.7-1.6
Short access total infusions1.11.22.01.00.01.41.1-1.2
Short access day 1 locomotion0.50.61.20.70.01.10.8-0.8
Short access day 10 total locomotion0.70.82.00.90.01.40.9-0.6
Short access total locomotion0.90.91.80.90.01.31.1-0.8
Compulsive drug intake0.00.00.10.10.00.20.10.3
One hour access (0.3 mA shock)1.61.92.9-1.70.0-1.2-1.61.5
One hour access (shock baseline)1.31.52.3-1.50.0-1.2-1.41.3
Number of responses in last shaping day0.60.61.0-0.90.0-0.7-0.81.0
Context. condit. distance diff. score0.20.20.7-0.30.0-0.90.30.3
Locomotion velocity, session 10.10.10.4-0.20.0-0.7-0.4-0.2
Locomotion distance, session 11.92.54.11.60.02.01.6-1.7
Locomotion velocity, session 21.82.13.41.70.01.41.5-1.8
Locomotion distance, session 21.52.24.31.70.02.11.3-1.4
Locomotion velocity, session 31.01.23.01.10.00.71.1-1.7
Locomotion distance, session 30.00.00.00.10.0-0.0-0.1-0.2
Stereotopy head waving bouts, day 30.91.03.21.00.00.80.6-1.8
Stereotopy head waving duration, day 30.20.20.70.40.00.40.3-0.8
Locomotion velocity, session 72.02.24.11.70.01.32.0-1.4
Locomotion distance, session 70.81.01.81.20.00.81.4-1.0
Stereotopy head waving bouts, day 70.10.10.30.50.00.50.4-0.3
Stereotopy head waving duration, day 71.01.22.11.30.01.51.3-0.8
Locomotion velocity, session 80.10.10.5-0.10.00.00.1-0.7
Locomotion distance, session 80.50.71.90.80.00.41.0-1.4
Degree of sensitization distance1.21.22.01.10.01.01.3-1.4
Degree of sensitization stereotypy0.30.30.50.70.00.60.7-0.3
Condit. Reinf. active minus inactive responses0.20.20.30.50.00.50.5-0.3
Condit. Reinf. active-inactive response ratio0.10.10.40.10.00.1-0.10.6
Condit. Reinf. active responses0.30.40.60.70.00.50.8-0.7
Condit. Reinf. inactive responses0.60.71.90.70.00.40.9-1.4
Incentive salience index mean0.80.91.51.00.00.91.2-1.1
Condit. Reinf. lever presses0.50.72.20.50.00.31.0-1.5
Time in familiar zone, hab. session 10.20.20.60.40.0-0.00.8-0.5
Time in novel zone, hab. session 10.60.61.3-0.80.0-0.5-1.10.8
Total zone transitions, hab. session 10.40.61.20.80.00.91.1-0.3
Total locomotion distance, hab. session 10.20.30.70.70.00.30.7-0.8
Locomotion velocity, hab. session 10.30.40.60.80.00.60.7-0.8
Time in familiar zone, hab. session 20.10.10.3-0.50.0-0.4-0.5-0.2
Time in novel zone, hab. session 20.50.51.01.00.00.80.80.0
Total zone transitions, hab. session 24.55.810.92.50.03.32.7-2.1
Total locomotion distance, hab. session 22.02.73.51.90.01.91.7-1.8
Locomotion velocity, hab. session 21.82.53.61.70.01.71.6-1.9
Novel to familiar place preference ratio0.20.30.50.70.00.50.7-0.2
Novelty place preference0.10.10.30.60.00.30.60.1
Time in novel zone, NPP test0.10.10.30.50.00.30.50.0
Total zone transitions, NPP test1.72.54.11.60.01.92.0-1.6
Total locomotion distance, NPP test0.91.31.91.30.01.11.4-1.3
Locomotion velocity, NPP test0.81.11.81.30.01.01.3-1.0
Pavlov. Cond. lever latency0.40.41.3-0.60.0-0.4-0.71.1
Pavlov. Cond. magazine entry latency0.81.01.71.30.01.11.3-0.8
Pavlov. Cond. change in total contacts0.20.20.50.70.00.20.6-0.1
Pavlov. Cond. index score0.00.00.10.20.0-0.00.2-0.2
Pavlov. Cond. latency score0.10.10.30.40.00.20.5-0.5
Pavlov. Cond. lever contacts0.10.10.40.20.00.10.4-0.7
Pavlov. Cond. magazine entry number0.10.10.20.10.00.40.2-0.5
Pavlov. Cond. intertrial magazine entries0.70.81.8-1.00.0-0.8-0.91.3
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.50.00.20.5-0.4
Pavlov. Cond. response bias0.00.00.1-0.10.0-0.3-0.10.2
Bone: apparent density2.33.87.21.90.02.72.1-1.9
Bone surface2.64.68.31.90.02.91.9-2.7
Bone volume1.93.25.81.70.02.41.8-2.0
Bone: connectivity density3.25.09.42.10.03.12.5-2.2
Bone: cortical apparent density0.20.31.00.50.0-0.00.01.0
Bone: cortical area0.10.10.5-0.10.0-0.0-0.1-0.7
Bone: cortical porosity0.70.81.80.90.01.31.0-0.6
Bone: cortical porosity0.80.92.11.00.01.50.9-0.8
Bone: cortical thickness0.10.10.2-0.40.0-0.5-0.30.2
Bone: cortical thickness0.20.30.8-0.50.0-0.9-0.40.5
Bone: cortical tissue density0.20.31.10.50.0-0.1-0.11.1
Bone: elastic displacement1.61.83.2-1.80.0-1.2-1.71.3
Bone: elastic work0.10.10.2-0.50.0-0.1-0.4-0.0
Bone: endosteal estimation0.81.85.11.20.01.21.0-2.3
Bone: endosteal perimeter0.71.43.80.80.01.31.0-1.9
Bone: final force0.91.53.71.00.01.21.2-1.9
Bone: final moment0.81.43.41.00.01.11.2-1.8
Bone: marrow area0.91.95.31.30.01.21.1-2.3
Bone: maximum diameter0.10.31.0-0.40.0-0.1-0.5-1.0
Bone: maximum force2.74.78.42.10.02.42.2-2.9
Bone: maximum moment2.44.27.82.00.02.22.1-2.8
Bone: minimum diameter1.32.43.11.80.01.71.8-1.7
Bone: periosteal estimation0.40.83.40.60.00.50.5-1.8
Bone: periosteal perimeter0.40.61.90.40.00.90.5-1.4
Bone: post-yield work7.510.213.63.70.03.53.7-3.4
Bone: stiffness2.23.54.82.00.02.02.1-2.2
Bone: tissue strength0.10.10.40.10.00.60.3-0.1
Bone: trabecular number1.52.35.31.40.02.31.6-1.4
Bone: trabecular spacing0.20.30.8-0.10.0-0.9-0.40.6
Bone: trabecular thickness0.40.51.70.50.01.30.8-0.3
Bone: trabecular tissue density1.01.42.0-1.30.0-1.2-1.31.4
Breakpoint value in progressive ratio session0.40.40.50.70.00.70.7-0.6
Distance traveled before self-admin0.10.10.10.30.00.20.3-0.3
Distance traveled after self-admin0.00.00.10.00.00.10.10.2
Delta time in closed arm before/after self-admin0.10.10.30.10.00.30.2-0.6
Delta time in open arm before/after self-admin0.30.30.6-0.50.0-0.6-0.40.8
Diff in mean of infusions in LGA sessions0.10.10.2-0.40.0-0.3-0.40.4
Extinction: sum of active levers before priming2.22.23.71.80.01.51.9-1.3
Active lever presses in extinction session 60.30.20.6-0.60.0-0.4-0.7-0.4
Delta distance traveled before/after self-admin0.00.00.1-0.30.0-0.1-0.30.3
Delta ambulatory time before/after self-admin0.00.00.1-0.30.0-0.1-0.20.3
Time in closed arm before self-admin0.00.00.10.20.00.20.2-0.3
Time in closed arm after self-admin0.20.20.40.40.00.30.4-0.6
Time in open arm before self-admin0.10.10.40.10.00.20.10.6
Time in open arm after self-admin0.80.82.0-0.90.0-0.8-0.91.4
Sum of active levers in priming session hrs 5-61.31.32.2-1.40.0-1.5-1.40.5
Time to tail flick, vehicle, before self-admin0.80.81.50.90.00.90.9-1.2
Time to tail flick, vehicle, after self-admin2.12.34.11.60.01.41.6-2.0
Time to tail flick, test, before self-admin1.31.32.01.20.01.41.2-1.3
Time to tail flick, test, after self-admin0.10.10.1-0.30.0-0.3-0.30.1
Delta time to tail flick, vehicle, before/after SA0.60.60.90.90.00.90.8-0.9
Delta time to tail flick, test, before/after SA2.22.02.8-1.60.0-1.7-1.61.5
Ambulatory time before self-admin0.00.00.10.10.00.00.1-0.3
Ambulatory time after self-admin0.10.10.20.40.00.40.40.1
Total heroin consumption0.81.01.41.20.01.11.1-1.0
Area under the delay curve0.60.61.21.10.01.10.8-0.4
Delay disc. indifference point, 0s delay0.60.71.51.20.01.00.7-0.6
Delay disc. indifference point, 16s delay0.20.20.60.80.00.40.10.6
Delay disc. indifference point, 2s delay0.10.10.30.30.00.30.0-0.5
Delay disc. indifference point, 24s delay0.10.10.2-0.00.0-0.1-0.30.5
Delay disc. indifference point, 4s delay0.30.40.70.70.00.90.6-0.5
Delay disc. indifference point, 8s delay0.30.30.70.60.00.80.6-0.3
Delay discount exponential model param0.40.50.9-0.90.0-1.0-0.70.3
Delay discount hyperbolic model param0.40.40.8-0.90.0-0.9-0.60.4
Fecal boli incidents, locomotor time 10.00.00.1-0.20.0-0.3-0.30.1
Change in fecal boli incidents, locomotor task0.70.71.50.80.00.70.8-1.2
Time >=10cm from walls, locomotor time 11.01.02.50.90.01.01.0-1.6
Bouts of movement, locomotor time 10.30.31.70.10.00.10.01.3
Total resting periods, locomotor time 10.20.31.20.20.00.20.11.1
Rest time, locomotor task time 11.01.11.7-1.20.0-1.3-1.30.7
Distance moved, locomotor task time 10.91.01.51.20.01.21.2-0.9
Vertical activity count, locomotor time 10.20.20.4-0.40.0-0.5-0.40.6
Time >=10cm from walls, locomotor time 20.00.00.10.10.00.10.30.1
Bouts of movement, locomotor time 20.20.20.50.50.00.40.20.7
Total resting periods, locomotor time 20.20.20.40.60.00.50.20.6
Rest time, locomotor task time 20.20.20.5-0.40.0-0.5-0.70.3
Distance moved, locomotor task time 20.00.00.10.10.00.10.3-0.1
Vertical activity count, locomotor time 21.01.11.8-1.30.0-1.4-1.10.8
Weight adjusted by age0.10.10.40.10.00.40.3-0.6
Seeking ratio, delayed vs. immediate footshock0.40.40.80.90.00.70.90.2
Locomotion in novel chamber1.11.42.4-1.40.0-1.6-1.30.9
Locomotion in novel chamber post-restriction0.60.71.4-0.80.0-1.2-0.90.9
Progressive ratio4.14.86.32.50.02.42.4-2.5
Food seeking constrained by brief footshock0.00.00.00.00.00.10.0-0.0
Seeking ratio, punishment vs. effort2.43.04.7-2.00.0-1.8-1.92.2
Run reversals in cocaine runway, females3.03.04.42.10.01.62.0-1.9
Run reversals in cocaine runway, males2.22.13.8-1.80.0-1.9-1.70.9
Latency to leave start box in cocaine runway0.80.91.31.10.00.91.1-1.0
Latency to leave start box in cocaine runway, F0.40.40.90.90.00.70.9-0.2
Latency to leave start box in cocaine runway, M0.30.31.50.30.00.10.3-1.2
Cd content in liver1.61.72.7-1.60.0-1.1-1.61.4
Co content in liver2.22.66.1-1.60.0-1.3-1.62.5
Cu content in liver0.30.40.90.90.00.60.90.1
Fe content in liver0.10.10.3-0.30.0-0.2-0.3-0.6
K content in liver3.03.04.81.80.01.81.9-2.2
Mg content in liver3.13.24.72.10.02.22.1-1.5
Mn content in liver0.40.50.80.40.00.90.8-0.8
Na content in liver0.20.20.5-0.20.0-0.70.0-0.7
Rb content in liver0.30.41.00.60.01.00.60.2
Se content in liver0.20.31.2-0.10.01.10.1-0.2
Sr content in liver0.40.40.7-0.60.0-0.9-0.70.5
Zn content in liver0.50.61.11.00.01.10.8-0.4