P4htm

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000020249 0.06 0.04 8.8e-03 0.02 0.01 0.01 0.01 5.5e-03 1.9e-02 2.8e-02 7.1e-02
2 BLA gene expression ENSRNOG00000020249 0.07 0.07 4.9e-03 0.01 0.02 0.04 0.02 7.7e-02 3.6e-02 2.7e-03 4.0e-02
3 Liver gene expression ENSRNOG00000020249 0.07 0.05 1.4e-03 0.01 0.02 0.04 0.02 1.1e-02 1.5e-03 7.0e-05 2.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.23.99.6-0.8-1.23.1
BMI without tail1.63.47.1-1.8-0.02.7
Body weight4.117.431.8-4.50.35.6
Epididymis fat weight0.10.30.6-0.30.40.7
Glucose1.52.35.0-0.62.2-1.3
Heart weight3.95.511.9-1.9-1.13.4
Left kidney weight0.82.33.1-1.31.81.5
Right kidney weight0.72.05.7-0.52.40.2
Tail length3.610.920.3-4.51.93.0
Length with tail4.616.829.7-5.52.14.1
Length without tail3.06.510.4-3.21.02.9
Liver weight, left0.40.71.0-0.60.8-1.0
Liver weight, right1.62.65.2-1.62.30.3
Parametrial fat weight0.81.62.3-1.41.50.6
Retroperitoneal fat weight0.31.11.4-0.91.21.0
Intraocular pressure1.01.52.8-1.70.9-0.9
Extensor digitorum longus weight0.20.81.70.8-1.30.3
Soleus weight2.46.910.4-3.20.63.2
Tibialis anterior weight0.10.20.60.1-0.40.8
Tibia length4.011.216.1-4.02.03.7
Number of licking bursts1.11.33.50.4-1.90.4
Food consumed during 24 hour testing period1.61.94.3-1.2-0.12.1
Times rat made contact with spout0.40.50.8-0.9-0.20.8
Mean time between licks in bursts0.60.82.21.5-0.4-0.2
Mean num. licks in bursts1.41.74.2-1.02.1-0.1
Std. dev. time between licks in bursts3.13.76.02.4-2.2-0.7
Water consumed over 24 hours0.50.61.0-0.0-0.81.0
Indifference point 0 sec0.71.12.0-1.41.00.6
Indifference point AUC2.22.64.3-0.42.1-1.8
Indifference point function ln k1.11.61.91.0-1.41.3
Indifference point function log k1.11.61.91.0-1.41.3
Delay discounting total patch changes 0 sec0.71.12.3-1.50.50.9
Delay discounting total patch changes 12 sec0.60.81.4-1.21.0-0.2
Delay discounting total patch changes 18 sec1.41.92.9-1.71.5-0.7
Delay discounting total patch changes 24 sec1.11.33.0-1.70.80.7
Delay discounting total patch changes 6 sec1.32.03.6-0.61.9-1.4
Delay discounting time to switch 0 sec0.20.30.80.4-0.90.2
Delay discounting water rate 0 sec0.20.30.4-0.5-0.70.5
Delay discounting water rate 12 sec0.71.02.1-0.4-0.91.4
Delay discounting water rate 18 sec0.60.82.2-0.10.11.5
Delay discounting water rate 24 sec0.50.81.1-1.0-0.31.1
Delay discounting water rate 6 sec0.10.10.3-0.60.10.3
Locomotor activity4.16.69.6-3.10.93.1
Locomotor testing distance3.66.08.4-2.81.32.9
Locomotor testing rearing0.10.10.2-0.50.40.3
Light reinforcement 10.61.11.5-1.11.20.6
Light reinforcement 21.01.32.60.41.6-1.0
Reaction time number correct1.01.52.21.11.1-1.5
Reaction time mean minus median0.20.20.4-0.50.70.1
Reaction time mean minus median AUC0.40.50.8-0.90.9-0.2
Reaction time num false alarms0.30.40.50.7-0.5-0.6
Reaction time num false alarms AUC0.10.20.30.4-0.3-0.6
Reaction time trials correct on left1.01.52.21.11.1-1.5
Reaction time trials on left1.11.52.21.11.0-1.5
Reaction time mean0.20.20.40.2-0.7-0.4
Reaction time mean AUC0.30.30.70.2-0.5-0.8
Median of all reaction times0.30.40.60.5-0.7-0.8
Reaction time omissions0.60.81.30.6-0.8-1.2
Reaction time false alarm rate0.30.41.2-0.0-1.10.3
Reaction time premature initiation rate0.70.91.7-1.30.60.7
Reaction time premature initiations0.30.40.9-0.60.90.1
Std. dev. reaction times0.10.20.4-0.30.3-0.7
Reaction time trials completed1.11.52.21.11.0-1.5
Reaction time trials AUC1.31.92.81.31.1-1.7
Social response proportion0.10.10.2-0.4-0.2-0.3
Social responses0.50.61.1-0.81.00.0
Social time0.40.60.70.8-0.70.7
Conditioned locomotion2.02.44.51.60.4-2.1
Cocaine response after cond. corrected0.50.51.0-0.7-0.21.0
Cocaine response after cond. not corrected1.41.52.2-1.50.61.4
Cocaine response before conditioning0.70.81.5-0.91.20.5
Saline control response1.11.52.4-1.51.50.0
Condit. Reinf. active minus inactive responses1.11.42.6-1.20.21.6
Condit. Reinf. active-inactive response ratio0.90.91.6-1.00.51.3
Condit. Reinf. active responses1.21.63.2-1.3-0.11.8
Condit. Reinf. inactive responses0.10.20.30.1-0.60.4
Condit. Reinf. lever presses1.41.93.8-1.30.12.0
Condit. Reinf. lever reinforcers received1.31.83.5-1.4-0.21.9
Pavlov. Cond. lever latency0.30.30.90.4-0.1-0.9
Pavlov. Cond. magazine entry latency0.10.20.30.5-0.40.3
Pavlov. Cond. change in total contacts1.72.34.8-1.5-0.02.2
Pavlov. Cond. index score0.40.51.4-0.0-0.21.2
Pavlov. Cond. latency score0.40.51.30.0-0.31.1
Pavlov. Cond. lever contacts0.50.71.0-0.80.71.0
Pavlov. Cond. magazine entry number0.20.30.6-0.80.50.0
Pavlov. Cond. intertrial magazine entries0.50.71.20.7-1.1-0.6
Pavlov. Cond. lever-magazine prob. diff.0.40.51.40.0-0.21.2
Pavlov. Cond. response bias0.10.20.50.10.20.7
Conditioned reinforcement - actives0.20.20.40.3-0.4-0.6
Conditioned reinforcement - inactives1.41.63.41.0-1.9-0.4
Conditioned locomotion1.01.11.70.31.3-1.3
Intermittent access intake day 1-15 change2.62.55.91.3-2.40.3
Intermittent access intake escalation2.01.94.11.3-2.0-0.0
Intermittent access intake escalation 22.02.04.40.9-2.10.8
Intermitt. access day 1 inactive lever presses0.10.10.2-0.1-0.4-0.3
Intermitt. access day 15 inactive lever presses1.82.04.71.0-2.20.4
Intermitt. access escalation Index0.50.51.2-0.11.1-0.4
Intermittent access day 1 total infusions0.10.10.2-0.10.4-0.1
Intermittent access day 15 total infusions0.50.50.90.9-0.7-0.4
Intermittent access terminal intake (last 3 days)0.30.30.50.7-0.3-0.5
Intermittent access total infusions0.30.30.60.8-0.3-0.6
Intermittent access day 1 locomotion0.40.51.00.11.0-0.6
Intermittent access day 15 total locomotion2.12.34.11.21.1-2.0
Intermittent access total locomotion2.12.43.91.31.3-2.0
Intermittent access standard deviation1.31.43.20.6-1.80.8
Cocaine induced anxiety0.40.40.8-0.1-0.70.9
Post-drug Anxiety0.20.20.4-0.3-0.60.4
Baseline Anxiety0.50.61.11.0-0.6-0.6
Lifetime Intake0.40.50.80.80.1-0.9
Incentive Sensitization - Responses0.90.91.31.2-1.1-0.3
Incentive Sensitization - Breakpoint0.90.91.41.2-1.2-0.2
Progressive ratio test 1 active lever presses0.70.81.10.11.1-1.1
Progressive ratio test 1 breakpoint0.80.81.20.11.1-1.1
Progressive ratio test 1 inactive lever presses0.40.41.00.5-1.0-0.1
Progressive ratio test 2 active lever presses0.60.61.01.0-0.2-0.9
Progressive ratio test 2 breakpoint0.40.40.70.8-0.4-0.6
Progressive ratio test 2 inactive lever presses3.13.68.11.4-2.80.9
Total sessions with >9 infusions0.20.20.60.2-0.80.0
Short access day 1 total inactive lever presses2.42.74.52.1-0.9-1.7
Short access day 10 total inactive lever presses0.91.02.7-0.2-1.60.4
Short access day 1 total infusions0.40.40.90.6-0.2-0.9
Short access day 10 total infusions0.50.51.10.60.5-1.0
Short access total infusions1.31.42.81.00.7-1.7
Short access day 1 locomotion0.60.61.40.10.6-1.2
Short access day 10 total locomotion1.41.62.80.11.7-1.4
Short access total locomotion2.02.13.4-0.21.8-1.7
Compulsive drug intake1.21.22.20.11.5-1.2
One hour access (0.3 mA shock)1.01.22.30.70.8-1.5
One hour access (shock baseline)0.10.20.30.4-0.6-0.1
Number of responses in last shaping day0.60.61.50.6-1.20.2
Context. condit. distance diff. score0.10.10.2-0.10.20.5
Locomotion velocity, session 11.31.43.30.31.8-0.8
Locomotion distance, session 11.51.94.8-0.82.20.6
Locomotion velocity, session 20.20.30.50.70.00.5
Locomotion distance, session 20.30.51.30.41.20.1
Locomotion velocity, session 30.60.72.10.01.4-0.0
Locomotion distance, session 30.70.71.91.40.2-0.6
Stereotopy head waving bouts, day 31.21.42.6-0.3-1.61.3
Stereotopy head waving duration, day 30.30.40.5-0.7-0.70.5
Locomotion velocity, session 70.20.20.4-0.10.4-0.6
Locomotion distance, session 70.81.01.61.3-0.3-1.2
Stereotopy head waving bouts, day 70.10.10.1-0.00.3-0.3
Stereotopy head waving duration, day 70.30.40.6-0.70.80.2
Locomotion velocity, session 80.60.71.9-0.21.40.3
Locomotion distance, session 81.42.16.0-0.32.40.3
Degree of sensitization distance0.50.51.5-1.2-0.10.1
Degree of sensitization stereotypy0.60.61.3-0.31.2-0.7
Condit. Reinf. active minus inactive responses0.10.10.1-0.0-0.4-0.3
Condit. Reinf. active-inactive response ratio0.10.10.1-0.3-0.3-0.0
Condit. Reinf. active responses0.10.10.40.1-0.70.1
Condit. Reinf. inactive responses0.20.30.40.5-0.60.3
Incentive salience index mean0.10.10.20.3-0.5-0.3
Condit. Reinf. lever presses0.70.91.61.3-0.8-0.7
Time in familiar zone, hab. session 11.71.63.30.9-1.8-0.9
Time in novel zone, hab. session 10.60.50.8-0.60.90.7
Total zone transitions, hab. session 10.60.92.1-0.51.40.5
Total locomotion distance, hab. session 10.20.30.3-0.60.50.5
Locomotion velocity, hab. session 10.30.40.6-0.60.80.3
Time in familiar zone, hab. session 20.70.71.60.7-1.3-0.2
Time in novel zone, hab. session 20.50.51.2-0.01.1-0.4
Total zone transitions, hab. session 20.40.50.90.10.90.8
Total locomotion distance, hab. session 20.30.40.5-0.70.50.7
Locomotion velocity, hab. session 20.30.40.4-0.60.70.6
Novel to familiar place preference ratio2.32.46.0-0.82.4-0.8
Novelty place preference2.72.86.7-0.82.6-1.0
Time in novel zone, NPP test2.22.35.3-0.92.3-0.8
Total zone transitions, NPP test2.33.25.3-1.42.31.5
Total locomotion distance, NPP test1.01.42.2-1.20.71.5
Locomotion velocity, NPP test1.01.51.8-1.21.11.3
Pavlov. Cond. lever latency2.43.16.3-2.51.50.9
Pavlov. Cond. magazine entry latency3.54.68.12.8-2.1-1.1
Pavlov. Cond. change in total contacts1.71.82.71.3-1.6-1.0
Pavlov. Cond. index score4.05.17.62.8-2.6-0.9
Pavlov. Cond. latency score3.54.47.82.8-2.1-1.1
Pavlov. Cond. lever contacts1.61.93.11.8-1.5-0.5
Pavlov. Cond. magazine entry number4.35.48.4-2.92.51.4
Pavlov. Cond. intertrial magazine entries0.20.30.4-0.60.60.3
Pavlov. Cond. lever-magazine prob. diff.4.05.08.12.6-2.9-0.6
Pavlov. Cond. response bias4.25.27.82.8-2.6-0.9
Bone: apparent density0.50.92.3-0.01.5-0.6
Bone surface0.10.20.20.50.4-0.1
Bone volume0.40.61.70.31.3-0.3
Bone: connectivity density0.81.32.20.51.2-1.5
Bone: cortical apparent density0.40.51.10.40.4-1.1
Bone: cortical area0.60.91.70.6-1.30.8
Bone: cortical porosity1.61.83.20.11.5-1.8
Bone: cortical porosity1.92.03.90.31.4-2.0
Bone: cortical thickness1.22.03.2-0.2-1.81.7
Bone: cortical thickness0.00.00.1-0.0-0.4-0.1
Bone: cortical tissue density0.40.61.30.40.5-1.1
Bone: elastic displacement0.50.60.9-0.1-0.90.9
Bone: elastic work0.60.71.8-0.5-0.41.4
Bone: endosteal estimation0.20.50.7-0.20.9-0.8
Bone: endosteal perimeter0.71.52.61.60.4-1.3
Bone: final force0.91.63.5-1.0-0.51.9
Bone: final moment1.22.04.5-1.1-0.62.1
Bone: marrow area0.20.50.7-0.30.9-0.7
Bone: maximum diameter0.30.60.90.8-1.00.2
Bone: maximum force0.40.71.3-0.9-0.21.1
Bone: maximum moment0.50.91.7-1.0-0.31.3
Bone: minimum diameter0.20.41.11.1-0.0-0.2
Bone: periosteal estimation0.00.00.00.1-0.10.1
Bone: periosteal perimeter0.60.92.31.5-0.2-0.7
Bone: post-yield work0.10.10.3-0.1-0.50.3
Bone: stiffness0.00.00.1-0.30.10.1
Bone: tissue strength2.22.13.2-1.5-1.01.8
Bone: trabecular number1.32.12.61.11.5-1.6
Bone: trabecular spacing2.53.25.1-1.4-1.62.3
Bone: trabecular thickness1.11.43.6-0.11.9-0.7
Bone: trabecular tissue density0.10.20.5-0.70.10.1
Breakpoint value in progressive ratio session0.10.10.4-0.60.1-0.1
Distance traveled before self-admin0.40.50.90.90.60.4
Distance traveled after self-admin1.01.11.91.41.0-0.7
Delta time in closed arm before/after self-admin0.80.71.30.01.0-1.1
Delta time in open arm before/after self-admin0.10.10.3-0.10.5-0.1
Diff in mean of infusions in LGA sessions4.04.59.0-0.6-3.02.0
Extinction: sum of active levers before priming0.00.00.0-0.1-0.1-0.0
Active lever presses in extinction session 62.32.25.0-0.12.2-1.3
Delta distance traveled before/after self-admin0.20.20.40.30.1-0.7
Delta ambulatory time before/after self-admin0.30.30.4-0.60.7-0.2
Time in closed arm before self-admin1.01.11.8-0.7-1.31.1
Time in closed arm after self-admin0.00.00.1-0.20.1-0.2
Time in open arm before self-admin0.30.30.60.80.0-0.5
Time in open arm after self-admin2.02.23.20.71.8-1.7
Sum of active levers in priming session hrs 5-60.20.20.3-0.40.20.5
Time to tail flick, vehicle, before self-admin1.71.72.4-1.6-0.91.3
Time to tail flick, vehicle, after self-admin3.23.56.1-0.8-1.92.5
Time to tail flick, test, before self-admin0.70.71.1-0.41.1-0.9
Time to tail flick, test, after self-admin1.61.63.90.2-2.00.9
Delta time to tail flick, vehicle, before/after SA1.21.21.90.8-1.41.0
Delta time to tail flick, test, before/after SA1.41.33.20.6-1.80.5
Ambulatory time before self-admin0.90.91.41.2-1.10.3
Ambulatory time after self-admin2.22.44.31.22.1-1.2
Total heroin consumption2.02.44.3-1.0-1.42.1
Area under the delay curve1.71.93.41.20.8-1.9
Delay disc. indifference point, 0s delay0.60.61.0-0.20.9-1.0
Delay disc. indifference point, 16s delay1.11.12.00.80.7-1.4
Delay disc. indifference point, 2s delay0.50.60.90.50.8-0.9
Delay disc. indifference point, 24s delay1.01.01.71.00.6-1.3
Delay disc. indifference point, 4s delay1.31.32.81.10.3-1.7
Delay disc. indifference point, 8s delay1.41.52.11.40.7-1.4
Delay discount exponential model param1.61.73.0-1.3-0.51.7
Delay discount hyperbolic model param1.71.83.3-1.3-0.61.8
Fecal boli incidents, locomotor time 11.11.22.4-1.0-0.51.6
Change in fecal boli incidents, locomotor task0.30.30.50.00.6-0.7
Time >=10cm from walls, locomotor time 10.40.40.80.90.2-0.7
Bouts of movement, locomotor time 10.40.40.7-0.5-0.80.5
Total resting periods, locomotor time 10.20.20.3-0.4-0.60.5
Rest time, locomotor task time 10.40.41.00.50.4-1.0
Distance moved, locomotor task time 11.21.32.8-1.0-0.41.7
Vertical activity count, locomotor time 11.11.12.5-0.9-0.21.6
Time >=10cm from walls, locomotor time 20.80.91.1-1.00.90.8
Bouts of movement, locomotor time 20.10.10.10.3-0.1-0.3
Total resting periods, locomotor time 20.20.20.30.5-0.0-0.6
Rest time, locomotor task time 20.60.71.3-0.41.1-0.8
Distance moved, locomotor task time 20.70.82.2-0.4-0.21.5
Vertical activity count, locomotor time 20.20.20.60.20.20.8
Weight adjusted by age1.11.23.2-0.4-0.61.8
Seeking ratio, delayed vs. immediate footshock1.51.72.21.50.9-1.5
Locomotion in novel chamber0.20.30.40.50.6-0.3
Locomotion in novel chamber post-restriction0.70.82.1-0.61.4-0.1
Progressive ratio4.24.910.8-1.83.30.7
Food seeking constrained by brief footshock1.21.42.21.50.7-1.2
Seeking ratio, punishment vs. effort5.36.512.22.6-3.5-0.8
Run reversals in cocaine runway, females2.52.55.01.6-2.2-0.1
Run reversals in cocaine runway, males1.61.63.1-0.7-1.11.8
Latency to leave start box in cocaine runway0.70.81.3-1.10.80.6
Latency to leave start box in cocaine runway, F2.12.33.7-1.4-1.01.9
Latency to leave start box in cocaine runway, M3.83.69.00.13.0-1.4
Cd content in liver1.31.43.2-1.8-0.50.9
Co content in liver0.60.61.50.3-1.20.6
Cu content in liver2.22.66.2-2.50.51.1
Fe content in liver1.21.43.0-1.7-0.90.6
K content in liver1.21.22.1-1.10.61.5
Mg content in liver0.30.31.0-0.10.11.0
Mn content in liver1.01.23.2-0.51.8-0.2
Na content in liver0.30.30.7-0.80.2-0.5
Rb content in liver0.91.11.7-1.3-1.30.3
Se content in liver0.20.30.6-0.40.30.7
Sr content in liver0.20.20.40.10.40.6
Zn content in liver2.83.05.6-2.41.01.6