Tut1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000020047 0.07 0.05 1.8e-03 0 0.01 0 0.01 8.1e-02 5.0e-02 1.0e-01 3.8e-02
2 Brain gene expression ENSRNOG00000020047 0.07 0.04 1.4e-09 0.12 0.1 0.11 0.1 2.0e-11 6.9e-10 4.1e-10 5.7e-10
3 OFC gene expression ENSRNOG00000020047 0.19 0.13 5.4e-03 0.09 0.04 0.04 0.06 3.5e-03 4.3e-02 4.1e-02 1.4e-02
4 PL gene expression ENSRNOG00000020047 0.05 0.03 3.6e-05 0.06 0.06 0.06 0.05 1.6e-05 4.9e-05 4.3e-05 6.4e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.89.216.34.0-2.5-2.7-2.7
BMI without tail1.12.32.31.5-1.5-1.5-1.5
Body weight3.314.117.62.8-4.0-3.9-4.2
Epididymis fat weight0.41.01.71.31.10.90.5
Glucose2.33.55.30.62.32.12.0
Heart weight0.50.71.50.30.90.71.2
Left kidney weight0.10.41.51.20.10.1-0.3
Right kidney weight0.20.72.41.6-0.20.0-0.6
Tail length0.92.73.8-0.8-1.9-1.7-1.9
Length with tail1.97.110.30.7-3.1-2.8-3.2
Length without tail1.73.75.01.2-2.1-2.0-2.2
Liver weight, left0.30.40.6-0.60.60.50.8
Liver weight, right0.10.10.40.7-0.1-0.10.0
Parametrial fat weight1.32.53.51.11.71.91.6
Retroperitoneal fat weight1.85.98.00.62.72.72.8
Intraocular pressure0.30.40.6-0.80.60.70.2
Extensor digitorum longus weight5.722.929.52.9-5.3-5.1-5.4
Soleus weight2.05.99.1-0.92.52.73.0
Tibialis anterior weight8.127.937.92.3-6.1-5.6-6.2
Tibia length1.02.94.91.9-1.4-1.0-2.2
Number of licking bursts0.00.00.00.2-0.20.10.0
Food consumed during 24 hour testing period0.20.20.5-0.10.60.70.2
Times rat made contact with spout0.40.40.8-0.9-0.7-0.6-0.3
Mean time between licks in bursts0.81.12.5-0.4-1.0-1.6-0.8
Mean num. licks in bursts0.20.20.8-0.90.1-0.10.2
Std. dev. time between licks in bursts0.20.30.7-0.80.3-0.30.5
Water consumed over 24 hours0.40.50.6-0.5-0.8-0.7-0.8
Indifference point 0 sec0.50.81.20.5-1.1-0.9-0.9
Indifference point AUC1.31.53.30.8-1.1-1.0-1.8
Indifference point function ln k1.72.56.3-0.71.41.12.5
Indifference point function log k1.72.56.3-0.71.41.12.5
Delay discounting total patch changes 0 sec0.50.91.40.0-1.2-1.1-0.9
Delay discounting total patch changes 12 sec4.66.19.00.8-2.9-2.5-3.0
Delay discounting total patch changes 18 sec0.30.40.7-0.1-0.8-0.6-0.8
Delay discounting total patch changes 24 sec6.58.211.11.6-3.3-3.0-3.1
Delay discounting total patch changes 6 sec1.01.52.10.8-1.4-1.4-1.2
Delay discounting time to switch 0 sec0.50.82.41.5-0.5-0.4-0.6
Delay discounting water rate 0 sec0.40.61.1-1.10.60.40.8
Delay discounting water rate 12 sec1.01.52.4-1.51.00.71.5
Delay discounting water rate 18 sec0.20.31.0-0.50.2-0.11.0
Delay discounting water rate 24 sec0.81.12.1-1.11.00.51.4
Delay discounting water rate 6 sec0.81.11.9-1.30.70.51.4
Locomotor activity0.61.02.4-1.60.50.31.1
Locomotor testing distance0.60.91.9-1.40.40.11.3
Locomotor testing rearing0.71.01.7-1.11.00.61.3
Light reinforcement 10.20.30.9-1.00.30.20.2
Light reinforcement 20.60.81.11.01.01.00.2
Reaction time number correct0.50.81.3-0.2-0.8-1.1-1.1
Reaction time mean minus median0.10.10.4-0.10.10.3-0.6
Reaction time mean minus median AUC0.20.31.0-1.00.10.2-0.3
Reaction time num false alarms0.50.62.0-1.40.2-0.20.7
Reaction time num false alarms AUC0.50.72.2-1.5-0.5-0.70.1
Reaction time trials correct on left0.50.81.3-0.2-0.8-1.1-1.1
Reaction time trials on left0.60.81.4-0.3-0.8-1.2-1.1
Reaction time mean0.20.30.4-0.40.60.60.2
Reaction time mean AUC0.30.40.7-0.40.80.80.3
Median of all reaction times0.00.00.1-0.00.20.20.1
Reaction time omissions0.30.51.7-1.3-0.2-0.2-0.0
Reaction time false alarm rate0.30.41.0-1.00.10.00.7
Reaction time premature initiation rate4.05.37.41.0-2.6-2.7-2.4
Reaction time premature initiations4.96.910.20.5-3.0-3.2-2.9
Std. dev. reaction times0.40.61.2-1.10.70.80.3
Reaction time trials completed0.60.81.4-0.3-0.8-1.2-1.1
Reaction time trials AUC0.50.71.2-0.2-0.8-1.1-0.9
Social response proportion0.10.10.20.1-0.0-0.4-0.5
Social responses0.30.41.2-1.1-0.3-0.5-0.3
Social time0.30.41.3-1.1-0.4-0.1-0.0
Conditioned locomotion0.50.61.00.3-1.0-0.8-0.7
Cocaine response after cond. corrected0.40.51.5-0.40.10.41.2
Cocaine response after cond. not corrected0.30.31.0-0.20.40.41.0
Cocaine response before conditioning0.20.30.70.30.5-0.2-0.9
Saline control response2.12.83.80.2-2.0-1.9-1.9
Condit. Reinf. active minus inactive responses0.40.61.2-0.00.91.10.5
Condit. Reinf. active-inactive response ratio1.41.42.61.11.21.60.7
Condit. Reinf. active responses0.00.00.0-0.10.10.2-0.2
Condit. Reinf. inactive responses0.40.50.8-0.9-0.5-0.9-0.5
Condit. Reinf. lever presses0.60.81.60.9-0.6-0.7-1.3
Condit. Reinf. lever reinforcers received0.10.10.3-0.0-0.1-0.0-0.5
Pavlov. Cond. lever latency0.40.61.1-1.10.40.50.8
Pavlov. Cond. magazine entry latency2.73.15.70.6-1.6-2.0-2.4
Pavlov. Cond. change in total contacts0.81.22.61.1-0.6-0.7-1.6
Pavlov. Cond. index score1.62.14.01.3-1.0-1.4-2.0
Pavlov. Cond. latency score1.51.93.51.4-0.9-1.2-1.9
Pavlov. Cond. lever contacts0.20.20.60.3-0.1-0.4-0.8
Pavlov. Cond. magazine entry number4.75.810.2-1.22.22.53.2
Pavlov. Cond. intertrial magazine entries1.31.62.4-0.81.21.61.5
Pavlov. Cond. lever-magazine prob. diff.1.92.44.61.2-1.1-1.5-2.1
Pavlov. Cond. response bias0.91.32.70.7-0.8-1.2-1.6
Conditioned reinforcement - actives2.32.23.2-0.51.81.81.5
Conditioned reinforcement - inactives1.01.11.70.71.31.30.9
Conditioned locomotion1.72.02.60.51.61.61.6
Intermittent access intake day 1-15 change1.91.92.5-1.21.61.61.1
Intermittent access intake escalation1.21.21.6-1.01.31.30.8
Intermittent access intake escalation 20.20.20.3-0.50.40.50.0
Intermitt. access day 1 inactive lever presses1.51.62.1-0.01.41.51.4
Intermitt. access day 15 inactive lever presses0.60.72.41.60.20.2-0.4
Intermitt. access escalation Index0.10.10.20.10.10.10.4
Intermittent access day 1 total infusions1.71.94.62.11.01.01.0
Intermittent access day 15 total infusions3.33.75.50.62.32.31.9
Intermittent access terminal intake (last 3 days)1.41.52.41.61.21.20.7
Intermittent access total infusions1.51.62.11.41.31.31.0
Intermittent access day 1 locomotion1.31.45.22.30.20.20.4
Intermittent access day 15 total locomotion0.70.72.01.40.60.70.4
Intermittent access total locomotion1.92.17.82.80.50.50.3
Intermittent access standard deviation1.71.82.4-1.01.51.51.2
Cocaine induced anxiety0.10.20.30.4-0.3-0.3-0.5
Post-drug Anxiety0.30.40.80.3-0.6-0.6-0.9
Baseline Anxiety0.91.01.40.0-1.2-1.2-1.1
Lifetime Intake1.21.41.61.31.21.21.0
Incentive Sensitization - Responses0.30.31.21.10.10.1-0.3
Incentive Sensitization - Breakpoint0.30.31.31.10.20.2-0.2
Progressive ratio test 1 active lever presses1.92.02.6-0.31.61.61.6
Progressive ratio test 1 breakpoint2.22.23.0-0.41.71.71.7
Progressive ratio test 1 inactive lever presses0.10.10.40.6-0.2-0.2-0.1
Progressive ratio test 2 active lever presses1.82.02.90.51.71.71.4
Progressive ratio test 2 breakpoint2.73.04.5-0.02.12.11.8
Progressive ratio test 2 inactive lever presses1.21.31.61.21.31.30.8
Total sessions with >9 infusions1.51.62.10.61.41.41.5
Short access day 1 total inactive lever presses0.70.80.90.80.90.91.0
Short access day 10 total inactive lever presses1.61.72.8-0.71.31.31.7
Short access day 1 total infusions0.80.91.10.61.01.01.0
Short access day 10 total infusions1.11.23.71.90.60.60.5
Short access total infusions0.70.71.51.20.70.60.8
Short access day 1 locomotion0.70.82.91.7-0.2-0.2-0.1
Short access day 10 total locomotion0.50.62.31.5-0.2-0.20.0
Short access total locomotion1.01.03.81.9-0.4-0.4-0.2
Compulsive drug intake1.61.62.2-1.0-1.4-1.5-1.1
One hour access (0.3 mA shock)3.33.95.40.22.32.32.2
One hour access (shock baseline)4.85.58.00.12.82.82.5
Number of responses in last shaping day0.00.00.1-0.2-0.1-0.10.2
Context. condit. distance diff. score0.20.30.80.40.20.40.9
Locomotion velocity, session 10.10.10.3-0.0-0.6-0.40.2
Locomotion distance, session 10.71.02.10.9-1.5-0.9-0.5
Locomotion velocity, session 22.32.74.31.0-2.1-1.5-1.8
Locomotion distance, session 20.30.41.20.0-1.1-0.6-0.4
Locomotion velocity, session 31.01.13.01.7-0.8-0.7-0.5
Locomotion distance, session 30.10.10.20.1-0.4-0.3-0.3
Stereotopy head waving bouts, day 30.70.93.01.7-0.30.20.5
Stereotopy head waving duration, day 30.30.40.91.0-0.40.20.7
Locomotion velocity, session 70.20.20.70.8-0.10.10.3
Locomotion distance, session 70.10.10.20.5-0.1-0.10.5
Stereotopy head waving bouts, day 70.30.31.01.0-0.60.1-0.3
Stereotopy head waving duration, day 71.61.92.61.2-1.5-1.2-1.6
Locomotion velocity, session 80.20.30.7-0.8-0.5-0.20.4
Locomotion distance, session 80.30.40.90.9-0.00.60.7
Degree of sensitization distance0.60.62.21.50.10.00.4
Degree of sensitization stereotypy0.70.81.20.9-1.0-0.4-1.1
Condit. Reinf. active minus inactive responses0.80.91.30.5-1.1-1.0-1.1
Condit. Reinf. active-inactive response ratio0.40.40.6-0.4-0.7-0.8-0.6
Condit. Reinf. active responses0.81.01.61.2-0.9-0.7-1.1
Condit. Reinf. inactive responses0.50.62.11.40.40.6-0.1
Incentive salience index mean1.21.51.81.2-1.2-1.2-1.3
Condit. Reinf. lever presses0.91.22.01.4-0.9-0.8-1.1
Time in familiar zone, hab. session 10.10.10.30.60.1-0.4-0.3
Time in novel zone, hab. session 11.11.11.4-1.11.00.91.2
Total zone transitions, hab. session 10.30.41.20.0-1.1-0.4-0.6
Total locomotion distance, hab. session 10.30.41.01.0-0.20.60.4
Locomotion velocity, hab. session 10.20.30.80.9-0.70.1-0.2
Time in familiar zone, hab. session 20.70.72.1-1.40.70.10.4
Time in novel zone, hab. session 20.70.71.71.3-0.8-0.5-0.6
Total zone transitions, hab. session 21.41.92.91.0-1.7-1.3-1.3
Total locomotion distance, hab. session 20.30.40.90.9-0.7-0.2-0.3
Locomotion velocity, hab. session 20.30.41.31.1-0.60.1-0.1
Novel to familiar place preference ratio1.61.72.61.2-1.2-1.1-1.6
Novelty place preference0.91.01.61.1-0.8-0.8-1.3
Time in novel zone, NPP test1.01.11.71.1-0.8-0.9-1.3
Total zone transitions, NPP test1.11.53.30.4-1.8-1.2-1.2
Total locomotion distance, NPP test0.10.20.60.4-0.8-0.2-0.0
Locomotion velocity, NPP test0.10.10.50.1-0.7-0.00.1
Pavlov. Cond. lever latency1.21.62.5-1.61.01.01.3
Pavlov. Cond. magazine entry latency1.01.32.61.6-0.5-0.8-1.3
Pavlov. Cond. change in total contacts0.40.51.51.20.10.0-0.5
Pavlov. Cond. index score0.40.61.00.9-0.4-0.6-1.0
Pavlov. Cond. latency score0.40.61.01.0-0.4-0.6-0.9
Pavlov. Cond. lever contacts0.30.40.80.9-0.3-0.4-0.6
Pavlov. Cond. magazine entry number0.30.41.1-0.50.30.51.0
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.50.10.4-0.1
Pavlov. Cond. lever-magazine prob. diff.0.60.71.21.0-0.5-0.6-1.1
Pavlov. Cond. response bias0.50.61.20.9-0.4-0.5-1.1
Bone: apparent density0.40.72.11.5-0.5-0.5-0.5
Bone surface1.73.05.32.3-1.3-1.3-1.8
Bone volume0.91.64.32.1-0.7-0.7-1.1
Bone: connectivity density1.62.53.51.9-1.3-1.5-1.6
Bone: cortical apparent density0.50.71.2-0.7-1.1-0.8-0.7
Bone: cortical area0.71.11.61.2-0.9-0.8-1.3
Bone: cortical porosity0.20.20.6-0.8-0.10.20.2
Bone: cortical porosity0.30.30.8-0.9-0.4-0.3-0.1
Bone: cortical thickness2.64.25.7-0.6-2.3-2.4-2.4
Bone: cortical thickness0.70.81.3-0.8-0.9-1.1-0.7
Bone: cortical tissue density0.60.81.4-0.8-1.2-0.8-0.8
Bone: elastic displacement0.70.82.1-1.50.50.40.8
Bone: elastic work0.91.22.1-0.4-1.2-1.5-0.9
Bone: endosteal estimation1.73.66.12.51.71.71.6
Bone: endosteal perimeter2.45.06.52.62.22.41.8
Bone: final force1.93.13.61.8-1.7-1.6-1.9
Bone: final moment1.82.93.61.8-1.7-1.5-1.9
Bone: marrow area1.73.75.72.41.81.81.7
Bone: maximum diameter0.40.82.81.7-0.20.1-0.5
Bone: maximum force2.95.19.33.1-1.7-1.7-2.2
Bone: maximum moment2.74.78.42.9-1.7-1.7-2.2
Bone: minimum diameter1.32.46.12.51.21.20.9
Bone: periosteal estimation0.81.66.02.50.40.50.1
Bone: periosteal perimeter0.50.72.61.60.40.5-0.0
Bone: post-yield work2.12.99.53.11.01.00.5
Bone: stiffness0.81.32.81.7-0.7-0.6-1.2
Bone: tissue strength0.20.20.5-0.30.70.50.2
Bone: trabecular number0.91.43.31.8-0.7-0.9-1.0
Bone: trabecular spacing0.70.82.7-1.70.50.40.5
Bone: trabecular thickness0.30.40.50.50.70.70.6
Bone: trabecular tissue density3.75.27.1-1.92.12.32.7
Breakpoint value in progressive ratio session1.21.32.6-0.2-1.2-1.1-1.6
Distance traveled before self-admin1.61.72.80.8-1.3-1.3-1.7
Distance traveled after self-admin0.20.20.4-0.0-0.3-0.4-0.7
Delta time in closed arm before/after self-admin1.91.93.30.4-1.8-1.8-1.0
Delta time in open arm before/after self-admin1.00.91.70.7-0.9-0.7-1.3
Diff in mean of infusions in LGA sessions1.41.62.1-0.6-1.4-1.4-1.4
Extinction: sum of active levers before priming3.23.24.50.8-2.0-1.9-2.1
Active lever presses in extinction session 61.71.63.10.2-1.3-1.3-1.8
Delta distance traveled before/after self-admin0.40.50.7-0.80.60.50.8
Delta ambulatory time before/after self-admin0.80.91.3-1.10.80.71.0
Time in closed arm before self-admin0.20.20.30.50.50.5-0.0
Time in closed arm after self-admin0.30.30.6-0.20.60.50.8
Time in open arm before self-admin0.70.81.8-1.40.20.11.1
Time in open arm after self-admin0.30.30.9-1.0-0.4-0.3-0.1
Sum of active levers in priming session hrs 5-60.40.41.4-0.2-0.5-0.3-1.2
Time to tail flick, vehicle, before self-admin1.01.03.11.7-0.5-0.4-0.7
Time to tail flick, vehicle, after self-admin0.60.60.90.7-0.9-0.9-0.6
Time to tail flick, test, before self-admin1.01.02.31.5-0.9-0.8-0.4
Time to tail flick, test, after self-admin0.10.10.1-0.30.30.30.3
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.4-0.4-0.30.0
Delta time to tail flick, test, before/after SA0.70.62.1-1.40.50.50.1
Ambulatory time before self-admin1.21.22.50.8-1.0-0.9-1.6
Ambulatory time after self-admin0.20.20.40.6-0.1-0.1-0.6
Total heroin consumption2.73.24.7-0.5-2.1-1.9-2.2
Area under the delay curve0.10.10.30.6-0.3-0.20.0
Delay disc. indifference point, 0s delay0.20.20.50.70.0-0.10.6
Delay disc. indifference point, 16s delay0.30.31.01.0-0.1-0.1-0.3
Delay disc. indifference point, 2s delay0.30.30.70.80.50.40.5
Delay disc. indifference point, 24s delay0.20.20.3-0.0-0.6-0.6-0.2
Delay disc. indifference point, 4s delay0.50.50.90.5-1.0-0.8-0.3
Delay disc. indifference point, 8s delay0.20.20.5-0.40.10.20.7
Delay discount exponential model param0.10.10.3-0.50.30.1-0.0
Delay discount hyperbolic model param0.10.10.4-0.60.30.2-0.0
Fecal boli incidents, locomotor time 10.50.61.10.31.01.10.4
Change in fecal boli incidents, locomotor task0.30.30.9-0.30.10.20.9
Time >=10cm from walls, locomotor time 12.42.53.90.91.82.01.4
Bouts of movement, locomotor time 10.70.83.0-1.7-0.10.0-0.4
Total resting periods, locomotor time 10.40.41.6-1.3-0.00.1-0.4
Rest time, locomotor task time 11.51.62.1-1.11.21.41.3
Distance moved, locomotor task time 10.40.40.60.8-0.5-0.8-0.5
Vertical activity count, locomotor time 10.40.40.7-0.10.70.50.8
Time >=10cm from walls, locomotor time 20.20.30.5-0.20.70.60.2
Bouts of movement, locomotor time 21.01.11.6-0.1-1.2-1.3-1.2
Total resting periods, locomotor time 20.50.50.7-0.0-0.8-0.8-0.8
Rest time, locomotor task time 22.63.04.4-0.81.91.92.1
Distance moved, locomotor task time 20.40.40.7-0.5-0.6-0.7-0.8
Vertical activity count, locomotor time 20.60.62.2-1.5-0.2-0.40.1
Weight adjusted by age1.41.62.21.2-1.0-1.3-1.5
Seeking ratio, delayed vs. immediate footshock0.00.00.00.2-0.1-0.0-0.0
Locomotion in novel chamber2.32.84.60.52.12.11.5
Locomotion in novel chamber post-restriction2.12.53.9-0.71.61.72.0
Progressive ratio0.20.20.80.90.00.3-0.3
Food seeking constrained by brief footshock0.10.10.2-0.4-0.10.10.4
Seeking ratio, punishment vs. effort0.30.30.9-1.0-0.2-0.30.5
Run reversals in cocaine runway, females1.51.52.11.2-1.4-1.3-0.8
Run reversals in cocaine runway, males0.50.50.7-0.80.60.70.8
Latency to leave start box in cocaine runway0.40.50.90.90.60.60.5
Latency to leave start box in cocaine runway, F0.10.10.20.50.00.0-0.1
Latency to leave start box in cocaine runway, M2.32.23.4-0.11.71.71.8
Cd content in liver1.11.21.9-0.21.21.21.4
Co content in liver2.63.07.7-2.81.10.71.6
Cu content in liver0.30.40.6-0.5-0.7-0.8-0.4
Fe content in liver0.00.00.10.30.10.20.1
K content in liver1.41.43.01.7-0.8-0.7-1.2
Mg content in liver1.01.03.21.8-0.6-0.4-0.7
Mn content in liver1.61.93.31.0-1.3-1.2-1.8
Na content in liver0.60.61.01.0-0.5-0.5-0.9
Rb content in liver0.81.11.9-0.11.11.11.4
Se content in liver0.40.51.81.30.10.1-0.6
Sr content in liver4.44.15.90.4-2.3-2.2-2.4
Zn content in liver3.43.74.91.3-2.1-2.0-2.2