Thop1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000019924 0.05 0.04 2.5e-04 0.03 0.03 0.01 0.02 6.0e-04 8.4e-04 1.6e-02 3.1e-03
2 IL mRNA stability ENSRNOG00000019924 0.2 0.14 1.4e-03 0.06 0.02 0.03 0.03 1.6e-02 1.2e-01 5.4e-02 7.1e-02
3 PL mRNA stability ENSRNOG00000019924 0.07 0.05 1.7e-05 0.07 0.06 0.07 0.07 3.1e-06 1.2e-05 5.0e-06 5.4e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail6.621.423.1-4.64.54.8
BMI without tail2.75.67.5-2.41.92.7
Body weight1.25.05.4-2.32.12.2
Epididymis fat weight0.10.20.60.4-0.8-0.1
Glucose1.42.12.5-1.41.41.6
Heart weight0.20.30.70.4-0.8-0.2
Left kidney weight0.10.40.60.8-0.0-0.7
Right kidney weight1.54.44.82.2-1.9-2.2
Tail length2.88.410.92.7-3.3-2.7
Length with tail2.07.38.42.6-2.6-2.9
Length without tail0.20.51.10.70.0-1.0
Liver weight, left2.94.75.7-2.12.02.4
Liver weight, right1.72.83.1-1.51.81.7
Parametrial fat weight0.40.71.00.7-1.0-0.7
Retroperitoneal fat weight0.51.62.5-1.61.01.2
Intraocular pressure0.20.30.5-0.4-0.50.7
Extensor digitorum longus weight5.020.022.8-4.63.94.8
Soleus weight8.725.326.7-4.95.25.0
Tibialis anterior weight1.03.64.1-1.62.02.0
Tibia length0.82.32.81.4-1.7-1.5
Number of licking bursts0.30.40.6-0.8-0.20.7
Food consumed during 24 hour testing period0.60.71.1-0.80.71.0
Times rat made contact with spout0.40.50.7-0.70.30.9
Mean time between licks in bursts3.75.16.52.0-2.6-2.2
Mean num. licks in bursts0.00.00.10.20.3-0.1
Std. dev. time between licks in bursts1.21.41.81.3-0.8-1.3
Water consumed over 24 hours0.30.41.0-0.31.00.3
Indifference point 0 sec0.10.20.3-0.50.50.2
Indifference point AUC0.91.11.41.1-1.2-0.8
Indifference point function ln k0.20.30.5-0.70.60.5
Indifference point function log k0.20.30.5-0.70.60.5
Delay discounting total patch changes 0 sec0.10.20.3-0.50.40.2
Delay discounting total patch changes 12 sec0.50.71.1-0.90.41.1
Delay discounting total patch changes 18 sec1.01.31.51.1-1.2-1.1
Delay discounting total patch changes 24 sec0.10.10.20.4-0.3-0.2
Delay discounting total patch changes 6 sec0.20.30.50.3-0.6-0.7
Delay discounting time to switch 0 sec1.11.73.4-1.11.80.8
Delay discounting water rate 0 sec0.20.30.4-0.4-0.60.5
Delay discounting water rate 12 sec1.52.33.3-1.70.81.8
Delay discounting water rate 18 sec0.70.91.1-0.8-1.01.0
Delay discounting water rate 24 sec1.52.13.5-1.9-0.11.7
Delay discounting water rate 6 sec0.30.41.2-0.1-1.10.1
Locomotor activity4.26.78.42.7-2.1-2.9
Locomotor testing distance2.44.14.92.1-1.7-2.2
Locomotor testing rearing0.00.00.10.1-0.3-0.1
Light reinforcement 15.710.511.83.2-3.1-3.4
Light reinforcement 22.02.73.61.5-1.5-1.9
Reaction time number correct0.91.41.9-1.40.51.4
Reaction time mean minus median0.81.11.51.2-1.1-0.8
Reaction time mean minus median AUC0.30.40.90.90.2-0.5
Reaction time num false alarms0.10.10.3-0.30.00.5
Reaction time num false alarms AUC0.20.30.6-0.60.10.8
Reaction time trials correct on left0.91.41.9-1.40.51.4
Reaction time trials on left0.91.31.8-1.30.51.4
Reaction time mean0.10.10.30.50.2-0.2
Reaction time mean AUC0.10.10.20.40.3-0.2
Median of all reaction times0.20.20.6-0.00.70.2
Reaction time omissions0.40.50.50.7-0.6-0.7
Reaction time false alarm rate0.00.00.00.10.10.1
Reaction time premature initiation rate0.81.12.00.6-1.4-0.9
Reaction time premature initiations0.40.51.5-0.1-1.2-0.3
Std. dev. reaction times0.40.51.01.0-0.5-0.6
Reaction time trials completed0.91.31.8-1.30.51.4
Reaction time trials AUC1.01.42.0-1.40.41.4
Social response proportion0.70.81.11.1-0.6-1.0
Social responses8.310.713.33.6-2.8-3.3
Social time0.81.01.2-1.10.91.0
Conditioned locomotion2.22.73.9-2.01.11.7
Cocaine response after cond. corrected6.47.28.8-3.02.02.9
Cocaine response after cond. not corrected6.97.79.5-3.12.13.0
Cocaine response before conditioning0.60.70.91.0-0.6-1.0
Saline control response0.10.10.2-0.40.20.4
Condit. Reinf. active minus inactive responses1.82.23.81.2-1.9-1.2
Condit. Reinf. active-inactive response ratio0.30.30.4-0.4-0.70.4
Condit. Reinf. active responses2.23.03.51.7-1.9-1.7
Condit. Reinf. inactive responses1.62.02.41.5-1.1-1.6
Condit. Reinf. lever presses2.02.73.91.5-2.0-1.4
Condit. Reinf. lever reinforcers received1.52.12.91.3-1.7-1.3
Pavlov. Cond. lever latency1.11.51.8-1.21.01.4
Pavlov. Cond. magazine entry latency0.70.81.01.0-0.7-0.9
Pavlov. Cond. change in total contacts0.91.21.31.1-1.1-1.1
Pavlov. Cond. index score1.11.41.51.2-1.1-1.2
Pavlov. Cond. latency score1.11.41.71.2-1.0-1.3
Pavlov. Cond. lever contacts0.81.11.21.0-1.1-1.1
Pavlov. Cond. magazine entry number1.11.31.7-1.31.01.1
Pavlov. Cond. intertrial magazine entries0.60.81.4-1.20.40.9
Pavlov. Cond. lever-magazine prob. diff.1.21.51.71.3-1.1-1.3
Pavlov. Cond. response bias1.82.52.91.5-1.7-1.5
Conditioned reinforcement - actives2.52.52.71.6-1.5-1.5
Conditioned reinforcement - inactives1.01.22.1-1.50.61.0
Conditioned locomotion7.59.010.42.9-3.2-2.8
Intermittent access intake day 1-15 change5.95.97.82.2-2.8-2.3
Intermittent access intake escalation4.84.78.31.6-2.9-1.8
Intermittent access intake escalation 26.26.110.02.0-3.2-2.1
Intermitt. access day 1 inactive lever presses0.20.20.60.2-0.70.1
Intermitt. access day 15 inactive lever presses0.30.40.80.2-0.9-0.5
Intermitt. access escalation Index0.20.10.30.30.6-0.1
Intermittent access day 1 total infusions0.10.10.1-0.40.30.2
Intermittent access day 15 total infusions1.41.62.90.8-1.7-1.1
Intermittent access terminal intake (last 3 days)1.01.11.60.9-1.3-0.9
Intermittent access total infusions0.20.20.50.0-0.7-0.3
Intermittent access day 1 locomotion0.20.20.40.1-0.7-0.5
Intermittent access day 15 total locomotion2.93.04.51.4-2.1-1.6
Intermittent access total locomotion0.91.11.70.8-1.3-1.0
Intermittent access standard deviation2.62.84.61.4-2.1-1.4
Cocaine induced anxiety1.31.52.21.5-0.6-1.4
Post-drug Anxiety1.21.32.21.5-0.2-1.3
Baseline Anxiety0.00.00.1-0.2-0.30.1
Lifetime Intake0.10.10.20.0-0.4-0.2
Incentive Sensitization - Responses0.30.30.80.4-0.90.1
Incentive Sensitization - Breakpoint0.40.40.80.5-0.90.0
Progressive ratio test 1 active lever presses0.30.30.5-0.70.30.4
Progressive ratio test 1 breakpoint0.30.30.5-0.70.40.5
Progressive ratio test 1 inactive lever presses0.00.00.0-0.0-0.1-0.2
Progressive ratio test 2 active lever presses0.20.20.50.1-0.70.0
Progressive ratio test 2 breakpoint0.30.30.50.5-0.7-0.3
Progressive ratio test 2 inactive lever presses0.00.10.10.2-0.3-0.2
Total sessions with >9 infusions0.10.10.20.50.1-0.3
Short access day 1 total inactive lever presses0.00.00.10.1-0.2-0.3
Short access day 10 total inactive lever presses0.10.10.2-0.2-0.40.2
Short access day 1 total infusions0.40.40.80.7-0.1-0.9
Short access day 10 total infusions0.00.00.1-0.1-0.20.0
Short access total infusions0.00.00.10.2-0.0-0.2
Short access day 1 locomotion1.11.12.10.8-0.8-1.4
Short access day 10 total locomotion3.74.16.01.6-2.4-1.9
Short access total locomotion1.11.11.30.9-1.1-1.1
Compulsive drug intake0.80.81.3-0.71.10.7
One hour access (0.3 mA shock)0.30.30.6-0.80.40.5
One hour access (shock baseline)0.10.10.2-0.4-0.40.1
Number of responses in last shaping day0.10.10.20.4-0.2-0.4
Context. condit. distance diff. score0.30.40.4-0.60.60.6
Locomotion velocity, session 11.11.21.71.3-0.4-1.3
Locomotion distance, session 10.50.71.10.90.2-1.1
Locomotion velocity, session 24.55.27.02.6-1.5-2.5
Locomotion distance, session 22.13.14.22.0-0.9-2.0
Locomotion velocity, session 35.76.67.22.6-2.7-2.5
Locomotion distance, session 30.00.00.00.0-0.00.2
Stereotopy head waving bouts, day 34.95.96.42.5-2.2-2.5
Stereotopy head waving duration, day 35.66.87.12.6-2.5-2.7
Locomotion velocity, session 70.91.01.21.0-0.8-1.1
Locomotion distance, session 70.20.20.4-0.50.10.6
Stereotopy head waving bouts, day 70.20.20.30.60.3-0.5
Stereotopy head waving duration, day 70.50.71.01.0-0.1-1.0
Locomotion velocity, session 81.21.42.11.4-0.3-1.4
Locomotion distance, session 80.10.20.30.5-0.2-0.5
Degree of sensitization distance0.30.30.4-0.60.60.5
Degree of sensitization stereotypy1.31.42.7-0.91.60.9
Condit. Reinf. active minus inactive responses3.94.34.62.1-2.1-2.0
Condit. Reinf. active-inactive response ratio1.71.82.71.2-1.6-1.1
Condit. Reinf. active responses3.94.75.62.4-1.9-2.2
Condit. Reinf. inactive responses1.21.42.01.4-0.6-1.4
Incentive salience index mean2.42.93.71.9-1.4-1.7
Condit. Reinf. lever presses0.40.50.90.90.4-0.7
Time in familiar zone, hab. session 11.81.72.41.2-1.6-1.1
Time in novel zone, hab. session 10.60.61.4-0.51.20.4
Total zone transitions, hab. session 11.31.82.51.6-0.7-1.6
Total locomotion distance, hab. session 12.02.84.02.0-0.6-2.0
Locomotion velocity, hab. session 12.23.14.22.1-1.0-2.1
Time in familiar zone, hab. session 24.95.27.62.1-2.8-1.9
Time in novel zone, hab. session 23.43.55.7-1.62.41.4
Total zone transitions, hab. session 20.20.30.70.20.8-0.4
Total locomotion distance, hab. session 21.21.62.31.4-0.7-1.5
Locomotion velocity, hab. session 21.31.82.71.5-0.6-1.6
Novel to familiar place preference ratio2.83.05.5-1.32.31.3
Novelty place preference1.61.73.4-0.91.90.9
Time in novel zone, NPP test1.92.03.9-1.02.01.1
Total zone transitions, NPP test0.00.10.10.20.3-0.2
Total locomotion distance, NPP test0.10.20.20.30.5-0.3
Locomotion velocity, NPP test0.20.30.40.60.2-0.6
Pavlov. Cond. lever latency0.10.20.2-0.5-0.40.4
Pavlov. Cond. magazine entry latency2.53.24.11.7-2.0-1.7
Pavlov. Cond. change in total contacts0.10.10.10.3-0.2-0.3
Pavlov. Cond. index score0.50.60.90.9-0.5-0.9
Pavlov. Cond. latency score0.60.81.21.1-0.4-1.0
Pavlov. Cond. lever contacts0.30.40.60.80.2-0.7
Pavlov. Cond. magazine entry number0.60.70.8-0.80.90.8
Pavlov. Cond. intertrial magazine entries0.10.10.3-0.1-0.60.1
Pavlov. Cond. lever-magazine prob. diff.0.91.11.41.2-0.8-1.1
Pavlov. Cond. response bias1.01.21.31.1-1.1-1.1
Bone: apparent density0.50.91.31.20.6-1.0
Bone surface1.62.84.72.20.3-1.9
Bone volume1.72.94.72.20.3-2.0
Bone: connectivity density0.30.40.90.51.0-0.3
Bone: cortical apparent density0.81.11.3-1.11.01.0
Bone: cortical area0.30.41.3-0.11.10.1
Bone: cortical porosity0.80.91.31.0-0.6-1.1
Bone: cortical porosity0.30.30.60.60.1-0.8
Bone: cortical thickness0.81.32.1-1.01.50.9
Bone: cortical thickness0.10.10.1-0.3-0.30.3
Bone: cortical tissue density0.60.80.9-1.00.80.8
Bone: elastic displacement0.30.40.40.7-0.5-0.6
Bone: elastic work0.10.10.4-0.10.60.1
Bone: endosteal estimation0.10.30.6-0.20.80.4
Bone: endosteal perimeter0.51.01.61.3-0.4-1.1
Bone: final force0.71.22.6-0.71.60.7
Bone: final moment0.60.92.1-0.61.40.6
Bone: marrow area0.10.30.7-0.20.80.4
Bone: maximum diameter1.12.12.91.7-0.8-1.7
Bone: maximum force0.81.42.6-0.91.60.8
Bone: maximum moment0.61.12.1-0.81.50.7
Bone: minimum diameter0.10.10.20.40.3-0.4
Bone: periosteal estimation0.20.41.1-0.01.10.1
Bone: periosteal perimeter0.40.60.91.00.0-0.9
Bone: post-yield work0.60.80.9-0.90.80.9
Bone: stiffness2.43.85.5-1.82.31.7
Bone: tissue strength1.51.41.8-1.11.41.1
Bone: trabecular number1.32.13.11.8-0.6-1.7
Bone: trabecular spacing1.62.03.1-1.70.11.8
Bone: trabecular thickness1.51.82.61.60.7-1.5
Bone: trabecular tissue density2.43.44.9-2.21.41.9
Breakpoint value in progressive ratio session4.34.86.92.0-2.6-1.9
Distance traveled before self-admin0.20.20.2-0.20.50.5
Distance traveled after self-admin0.91.01.21.1-1.0-0.9
Delta time in closed arm before/after self-admin1.71.72.9-1.40.31.7
Delta time in open arm before/after self-admin1.01.01.3-1.01.20.7
Diff in mean of infusions in LGA sessions1.41.61.91.1-1.4-1.3
Extinction: sum of active levers before priming0.80.81.90.5-1.4-0.5
Active lever presses in extinction session 63.02.93.11.7-1.8-1.6
Delta distance traveled before/after self-admin1.61.72.01.2-1.3-1.4
Delta ambulatory time before/after self-admin1.92.12.31.5-1.3-1.5
Time in closed arm before self-admin0.50.61.6-0.51.30.2
Time in closed arm after self-admin0.00.00.00.1-0.10.0
Time in open arm before self-admin0.91.01.51.0-1.2-0.7
Time in open arm after self-admin0.80.81.1-1.00.80.9
Sum of active levers in priming session hrs 5-60.00.00.0-0.2-0.10.0
Time to tail flick, vehicle, before self-admin1.11.11.81.3-0.4-1.1
Time to tail flick, vehicle, after self-admin0.10.10.2-0.0-0.40.2
Time to tail flick, test, before self-admin0.50.50.80.9-0.0-0.9
Time to tail flick, test, after self-admin0.40.40.70.9-0.3-0.7
Delta time to tail flick, vehicle, before/after SA1.11.11.7-1.20.41.3
Delta time to tail flick, test, before/after SA0.10.10.3-0.0-0.50.0
Ambulatory time before self-admin0.20.20.2-0.30.40.5
Ambulatory time after self-admin0.50.50.60.8-0.8-0.7
Total heroin consumption1.82.22.61.6-1.5-1.3
Area under the delay curve1.81.92.6-1.21.61.3
Delay disc. indifference point, 0s delay5.45.910.1-2.03.21.9
Delay disc. indifference point, 16s delay0.10.10.1-0.30.40.2
Delay disc. indifference point, 2s delay4.85.47.6-2.12.82.1
Delay disc. indifference point, 24s delay0.50.50.5-0.70.70.7
Delay disc. indifference point, 4s delay0.70.71.5-0.51.20.6
Delay disc. indifference point, 8s delay1.21.31.6-1.11.01.3
Delay discount exponential model param1.71.82.31.2-1.5-1.3
Delay discount hyperbolic model param2.42.53.41.4-1.8-1.5
Fecal boli incidents, locomotor time 12.22.43.2-1.81.21.6
Change in fecal boli incidents, locomotor task0.60.61.11.1-0.3-0.7
Time >=10cm from walls, locomotor time 10.20.20.5-0.20.7-0.0
Bouts of movement, locomotor time 10.10.10.20.2-0.5-0.3
Total resting periods, locomotor time 10.20.20.30.4-0.5-0.5
Rest time, locomotor task time 10.20.20.30.4-0.4-0.6
Distance moved, locomotor task time 10.20.20.7-0.20.80.1
Vertical activity count, locomotor time 10.10.10.1-0.30.20.4
Time >=10cm from walls, locomotor time 21.21.31.7-1.30.91.2
Bouts of movement, locomotor time 20.80.91.41.1-0.4-1.2
Total resting periods, locomotor time 20.80.91.51.1-0.3-1.2
Rest time, locomotor task time 20.80.91.41.0-0.6-1.2
Distance moved, locomotor task time 21.01.21.6-1.30.81.2
Vertical activity count, locomotor time 21.31.42.1-1.40.61.3
Weight adjusted by age0.50.50.9-0.80.40.9
Seeking ratio, delayed vs. immediate footshock5.25.97.02.6-2.2-2.5
Locomotion in novel chamber0.30.30.60.6-0.8-0.1
Locomotion in novel chamber post-restriction0.70.91.01.0-0.9-0.9
Progressive ratio0.40.51.0-0.50.41.0
Food seeking constrained by brief footshock0.10.10.10.3-0.3-0.2
Seeking ratio, punishment vs. effort0.30.30.70.3-0.4-0.9
Run reversals in cocaine runway, females0.70.71.31.1-0.5-0.7
Run reversals in cocaine runway, males1.41.41.91.4-0.9-1.2
Latency to leave start box in cocaine runway1.61.72.21.5-0.9-1.5
Latency to leave start box in cocaine runway, F0.40.40.60.80.2-0.7
Latency to leave start box in cocaine runway, M2.32.24.01.2-2.0-1.1
Cd content in liver0.10.20.3-0.30.50.3
Co content in liver0.40.50.90.5-0.9-0.6
Cu content in liver0.10.10.30.20.5-0.2
Fe content in liver0.00.00.0-0.2-0.20.1
K content in liver0.20.20.30.50.2-0.4
Mg content in liver0.20.20.40.60.3-0.4
Mn content in liver2.32.64.02.0-0.5-1.9
Na content in liver0.70.81.5-0.71.20.6
Rb content in liver0.20.30.80.00.90.0
Se content in liver0.20.20.30.5-0.4-0.5
Sr content in liver0.20.10.2-0.5-0.30.4
Zn content in liver1.31.43.60.6-1.9-0.4