Nfkbie

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000019907 0.12 0.07 5.8e-04 0.06 0.06 0.07 0.06 2.6e-04 5.9e-04 1.8e-04 5.3e-04
2 IL gene expression ENSRNOG00000019907 0.26 0.12 1.6e-04 0.08 0.11 0.09 0.1 5.2e-03 1.5e-03 3.8e-03 2.1e-03
3 Liver gene expression ENSRNOG00000019907 0.04 0.03 6.5e-03 0.01 0 0 0 7.9e-03 2.4e-01 1.6e-01 1.9e-01
4 PL gene expression ENSRNOG00000019907 0.14 0.06 1.0e-07 0.11 0.07 0.08 0.1 5.7e-09 2.9e-06 1.5e-06 7.5e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail4.213.617.4-3.6-4.2-3.7-3.2
BMI without tail13.027.233.4-5.2-5.8-5.5-4.3
Body weight1.24.98.5-1.9-2.4-2.9-1.2
Epididymis fat weight1.12.53.8-1.6-1.8-1.9-0.8
Glucose1.72.73.6-1.4-1.9-1.6-1.6
Heart weight1.21.73.40.91.81.31.1
Left kidney weight0.61.72.4-1.5-1.1-1.4-1.1
Right kidney weight0.61.72.3-1.5-1.0-1.2-1.5
Tail length1.13.35.7-1.7-1.9-2.4-1.0
Length with tail0.51.93.61.31.50.31.9
Length without tail5.111.113.73.53.72.63.4
Liver weight, left0.50.81.2-1.1-1.0-0.5-0.9
Liver weight, right0.40.71.30.9-0.4-0.81.1
Parametrial fat weight3.77.313.3-1.9-3.0-3.7-1.8
Retroperitoneal fat weight0.82.84.5-1.4-2.1-1.6-1.4
Intraocular pressure0.30.40.60.70.10.80.7
Extensor digitorum longus weight0.10.20.70.1-0.5-0.80.1
Soleus weight0.10.30.70.3-0.6-0.80.2
Tibialis anterior weight0.30.91.4-0.6-1.2-1.1-0.8
Tibia length0.30.91.6-0.7-1.3-0.5-1.2
Number of licking bursts0.20.30.50.40.1-0.70.7
Food consumed during 24 hour testing period0.20.31.0-0.2-0.2-1.0-0.2
Times rat made contact with spout0.50.61.1-1.0-0.8-0.4-0.7
Mean time between licks in bursts1.01.32.11.11.41.11.0
Mean num. licks in bursts0.60.71.4-1.0-0.50.6-1.2
Std. dev. time between licks in bursts0.50.60.90.70.80.90.6
Water consumed over 24 hours1.92.32.8-1.6-1.2-1.7-1.5
Indifference point 0 sec0.61.01.5-1.2-0.8-1.0-1.0
Indifference point AUC1.31.53.5-1.0-1.2-0.1-1.9
Indifference point function ln k0.20.20.4-0.6-0.5-0.5-0.1
Indifference point function log k0.20.20.4-0.6-0.5-0.5-0.1
Delay discounting total patch changes 0 sec0.91.42.1-1.5-1.0-1.0-1.2
Delay discounting total patch changes 12 sec2.22.93.3-1.8-1.5-1.7-1.8
Delay discounting total patch changes 18 sec0.10.20.4-0.20.00.6-0.5
Delay discounting total patch changes 24 sec2.02.63.8-1.8-1.3-1.2-1.9
Delay discounting total patch changes 6 sec1.82.83.2-1.7-1.5-1.6-1.8
Delay discounting time to switch 0 sec3.04.66.71.72.61.72.4
Delay discounting water rate 0 sec1.93.05.3-1.3-1.8-1.3-2.3
Delay discounting water rate 12 sec3.14.77.5-1.4-2.7-2.1-2.1
Delay discounting water rate 18 sec1.92.53.0-1.5-1.7-1.7-1.3
Delay discounting water rate 24 sec2.63.55.6-1.2-2.3-2.4-1.3
Delay discounting water rate 6 sec0.30.40.8-0.2-0.9-0.7-0.7
Locomotor activity0.50.92.00.4-0.1-1.41.1
Locomotor testing distance0.50.81.90.40.1-1.41.0
Locomotor testing rearing0.40.71.70.2-1.0-1.30.3
Light reinforcement 10.30.61.7-0.4-0.8-1.3-0.2
Light reinforcement 20.30.41.20.3-0.4-1.10.6
Reaction time number correct1.01.44.0-1.0-0.7-0.1-2.0
Reaction time mean minus median0.70.91.30.91.10.31.2
Reaction time mean minus median AUC1.41.82.71.41.50.61.6
Reaction time num false alarms0.40.51.0-1.0-0.3-0.0-1.0
Reaction time num false alarms AUC0.71.01.7-1.3-0.6-0.4-1.3
Reaction time trials correct on left1.01.44.0-1.0-0.7-0.1-2.0
Reaction time trials on left1.01.44.1-1.1-0.7-0.1-2.0
Reaction time mean0.60.82.60.60.5-0.41.6
Reaction time mean AUC0.81.03.00.80.6-0.21.7
Median of all reaction times0.50.61.90.30.1-0.71.4
Reaction time omissions0.20.30.4-0.5-0.5-0.7-0.3
Reaction time false alarm rate0.00.10.2-0.5-0.1-0.1-0.0
Reaction time premature initiation rate0.10.20.2-0.4-0.5-0.4-0.2
Reaction time premature initiations0.50.71.2-0.9-0.8-0.5-1.1
Std. dev. reaction times0.60.92.10.90.7-0.11.5
Reaction time trials completed1.01.44.1-1.1-0.7-0.1-2.0
Reaction time trials AUC1.01.44.0-1.1-0.8-0.2-2.0
Social response proportion0.10.10.30.10.60.50.2
Social responses0.20.30.60.10.50.80.5
Social time1.41.83.6-1.4-1.2-0.4-1.9
Conditioned locomotion0.30.30.9-0.10.30.9-0.6
Cocaine response after cond. corrected0.60.71.00.90.61.00.8
Cocaine response after cond. not corrected1.01.21.91.10.91.40.9
Cocaine response before conditioning0.40.51.30.50.81.10.2
Saline control response0.00.10.2-0.00.20.40.0
Condit. Reinf. active minus inactive responses0.50.61.01.00.60.90.5
Condit. Reinf. active-inactive response ratio0.60.61.21.10.60.70.7
Condit. Reinf. active responses0.20.30.90.30.51.0-0.1
Condit. Reinf. inactive responses0.20.20.4-0.60.20.4-0.6
Condit. Reinf. lever presses0.10.10.2-0.2-0.3-0.4-0.4
Condit. Reinf. lever reinforcers received0.20.20.70.40.40.9-0.1
Pavlov. Cond. lever latency0.10.10.4-0.6-0.20.1-0.4
Pavlov. Cond. magazine entry latency0.20.30.60.1-0.6-0.8-0.4
Pavlov. Cond. change in total contacts0.10.20.6-0.1-0.4-0.8-0.2
Pavlov. Cond. index score0.40.51.3-0.1-0.7-1.1-0.5
Pavlov. Cond. latency score0.50.61.6-0.2-0.8-1.3-0.6
Pavlov. Cond. lever contacts0.10.10.30.3-0.0-0.50.2
Pavlov. Cond. magazine entry number0.10.20.5-0.20.20.70.3
Pavlov. Cond. intertrial magazine entries0.20.20.30.00.60.60.5
Pavlov. Cond. lever-magazine prob. diff.0.50.71.6-0.3-0.8-1.3-0.5
Pavlov. Cond. response bias0.20.30.50.70.6-0.00.5
Conditioned reinforcement - actives0.20.20.40.2-0.20.6-0.7
Conditioned reinforcement - inactives0.20.30.6-0.4-0.50.1-0.8
Conditioned locomotion0.00.00.00.1-0.1-0.00.1
Intermittent access intake day 1-15 change0.40.40.60.80.50.70.5
Intermittent access intake escalation1.61.62.11.51.01.21.2
Intermittent access intake escalation 20.10.10.30.20.40.60.0
Intermitt. access day 1 inactive lever presses0.60.71.51.10.2-0.31.2
Intermitt. access day 15 inactive lever presses0.20.20.7-0.2-0.3-0.8-0.1
Intermitt. access escalation Index1.00.91.6-0.8-1.3-1.0-0.6
Intermittent access day 1 total infusions0.30.30.6-0.8-0.6-0.4-0.2
Intermittent access day 15 total infusions0.40.40.80.60.40.60.9
Intermittent access terminal intake (last 3 days)0.00.00.1-0.10.00.30.2
Intermittent access total infusions0.10.20.4-0.6-0.40.2-0.3
Intermittent access day 1 locomotion0.20.20.4-0.4-0.6-0.50.1
Intermittent access day 15 total locomotion0.30.30.50.30.50.70.6
Intermittent access total locomotion0.20.20.6-0.00.50.80.3
Intermittent access standard deviation0.70.71.20.51.01.10.7
Cocaine induced anxiety0.20.20.40.60.30.50.5
Post-drug Anxiety3.33.65.21.92.01.32.3
Baseline Anxiety2.82.94.71.42.21.21.9
Lifetime Intake0.10.10.3-0.3-0.10.6-0.1
Incentive Sensitization - Responses2.22.23.2-1.4-1.8-1.1-1.6
Incentive Sensitization - Breakpoint1.91.92.7-1.3-1.6-0.9-1.6
Progressive ratio test 1 active lever presses0.30.30.90.4-0.2-0.20.9
Progressive ratio test 1 breakpoint0.30.31.10.5-0.10.01.1
Progressive ratio test 1 inactive lever presses0.20.20.40.0-0.3-0.60.4
Progressive ratio test 2 active lever presses0.20.20.6-0.1-0.8-0.2-0.1
Progressive ratio test 2 breakpoint0.40.41.1-0.4-1.0-0.5-0.4
Progressive ratio test 2 inactive lever presses0.60.71.1-0.9-0.9-0.2-1.0
Total sessions with >9 infusions0.20.20.4-0.6-0.4-0.4-0.4
Short access day 1 total inactive lever presses0.50.61.0-0.8-0.8-0.3-1.0
Short access day 10 total inactive lever presses0.50.61.1-0.5-0.6-1.0-0.8
Short access day 1 total infusions0.50.50.7-0.7-0.8-0.3-0.8
Short access day 10 total infusions0.10.10.2-0.20.00.40.3
Short access total infusions0.10.10.2-0.20.10.4-0.1
Short access day 1 locomotion0.20.20.40.70.50.20.5
Short access day 10 total locomotion0.50.50.90.40.91.00.4
Short access total locomotion0.30.30.50.40.70.70.3
Compulsive drug intake0.10.10.20.50.30.10.2
One hour access (0.3 mA shock)0.30.30.6-0.3-0.20.7-0.8
One hour access (shock baseline)0.10.10.3-0.4-0.50.1-0.3
Number of responses in last shaping day0.70.71.5-0.6-1.2-0.6-0.8
Context. condit. distance diff. score1.41.72.9-0.9-1.5-1.7-0.9
Locomotion velocity, session 10.40.40.7-0.40.20.8-0.8
Locomotion distance, session 10.20.30.5-0.3-0.6-0.5-0.7
Locomotion velocity, session 23.33.94.8-1.9-2.2-1.8-2.0
Locomotion distance, session 20.91.21.9-1.0-1.2-0.8-1.4
Locomotion velocity, session 31.01.11.8-1.0-1.2-0.5-1.3
Locomotion distance, session 30.10.10.3-0.4-0.2-0.0-0.5
Stereotopy head waving bouts, day 30.20.20.40.60.50.00.5
Stereotopy head waving duration, day 30.20.30.4-0.3-0.7-0.5-0.6
Locomotion velocity, session 70.50.50.70.80.90.80.4
Locomotion distance, session 70.20.20.6-0.3-0.20.3-0.8
Stereotopy head waving bouts, day 70.20.20.60.1-0.4-0.8-0.1
Stereotopy head waving duration, day 70.20.20.40.60.2-0.40.5
Locomotion velocity, session 80.30.40.80.90.60.40.5
Locomotion distance, session 81.31.92.5-1.1-1.6-1.4-1.4
Degree of sensitization distance0.20.20.4-0.4-0.40.0-0.6
Degree of sensitization stereotypy0.10.10.30.0-0.2-0.6-0.2
Condit. Reinf. active minus inactive responses1.71.93.51.91.11.11.2
Condit. Reinf. active-inactive response ratio1.31.42.41.50.80.91.3
Condit. Reinf. active responses0.81.02.31.50.60.71.0
Condit. Reinf. inactive responses0.30.30.6-0.4-0.7-0.8-0.4
Incentive salience index mean0.40.51.41.20.30.40.6
Condit. Reinf. lever presses0.50.71.2-0.5-1.1-1.1-0.4
Time in familiar zone, hab. session 14.64.45.3-2.3-2.2-1.8-2.0
Time in novel zone, hab. session 12.82.83.31.81.71.61.5
Total zone transitions, hab. session 11.11.52.1-0.8-1.5-1.5-1.1
Total locomotion distance, hab. session 10.91.32.0-0.5-1.4-1.3-1.1
Locomotion velocity, hab. session 10.50.71.3-0.2-1.1-1.0-0.7
Time in familiar zone, hab. session 20.10.10.3-0.10.2-0.20.6
Time in novel zone, hab. session 20.40.51.1-0.4-0.7-0.4-1.0
Total zone transitions, hab. session 20.20.20.30.60.1-0.50.5
Total locomotion distance, hab. session 20.10.10.40.2-0.3-0.60.1
Locomotion velocity, hab. session 20.10.10.20.40.1-0.30.3
Novel to familiar place preference ratio0.00.00.00.0-0.0-0.10.1
Novelty place preference0.00.00.1-0.1-0.1-0.40.0
Time in novel zone, NPP test0.10.20.3-0.4-0.3-0.5-0.3
Total zone transitions, NPP test0.50.81.3-0.6-0.9-1.1-0.8
Total locomotion distance, NPP test0.40.51.2-0.1-0.8-1.1-0.4
Locomotion velocity, NPP test0.20.30.90.4-0.4-1.00.3
Pavlov. Cond. lever latency0.81.01.21.01.00.81.1
Pavlov. Cond. magazine entry latency0.10.20.5-0.2-0.40.1-0.7
Pavlov. Cond. change in total contacts0.50.50.7-0.5-0.8-0.7-0.8
Pavlov. Cond. index score0.30.40.8-0.5-0.7-0.4-0.9
Pavlov. Cond. latency score0.30.30.8-0.4-0.6-0.3-0.9
Pavlov. Cond. lever contacts1.01.21.4-1.0-1.2-1.1-1.0
Pavlov. Cond. magazine entry number0.10.10.40.10.4-0.10.6
Pavlov. Cond. intertrial magazine entries0.20.20.5-0.5-0.4-0.7-0.3
Pavlov. Cond. lever-magazine prob. diff.0.30.40.7-0.4-0.8-0.4-0.8
Pavlov. Cond. response bias0.70.91.2-0.8-1.1-0.8-1.0
Bone: apparent density1.01.72.21.41.51.01.3
Bone surface3.25.78.22.32.92.41.8
Bone volume2.33.95.42.02.31.91.6
Bone: connectivity density1.32.13.01.41.71.31.3
Bone: cortical apparent density0.30.40.90.60.90.30.5
Bone: cortical area0.30.51.41.20.60.20.5
Bone: cortical porosity1.51.62.3-1.2-1.5-1.5-0.8
Bone: cortical porosity1.01.11.7-0.9-1.3-1.0-0.8
Bone: cortical thickness0.30.51.0-0.1-0.7-1.0-0.8
Bone: cortical thickness0.50.61.01.00.80.00.7
Bone: cortical tissue density0.30.40.80.60.90.20.5
Bone: elastic displacement0.10.10.2-0.1-0.0-0.40.3
Bone: elastic work0.50.61.20.50.0-1.11.1
Bone: endosteal estimation1.94.24.82.22.21.82.0
Bone: endosteal perimeter2.14.35.22.32.11.92.0
Bone: final force0.20.40.91.00.3-0.30.7
Bone: final moment0.10.20.60.80.2-0.40.4
Bone: marrow area2.14.45.12.22.31.82.1
Bone: maximum diameter0.81.42.11.41.21.30.7
Bone: maximum force0.61.01.81.30.6-0.31.3
Bone: maximum moment0.40.71.21.10.4-0.51.0
Bone: minimum diameter1.83.45.02.21.91.61.6
Bone: periosteal estimation1.42.84.62.11.71.31.5
Bone: periosteal perimeter1.22.03.71.91.20.61.6
Bone: post-yield work0.20.30.70.40.0-0.80.7
Bone: stiffness0.00.10.10.40.1-0.30.3
Bone: tissue strength0.80.81.4-1.2-0.9-0.9-0.5
Bone: trabecular number1.11.72.61.31.61.20.9
Bone: trabecular spacing2.33.03.8-2.0-1.8-1.4-1.8
Bone: trabecular thickness4.75.77.02.52.62.41.9
Bone: trabecular tissue density1.42.05.0-1.2-1.3-0.0-2.2
Breakpoint value in progressive ratio session0.20.20.7-0.20.10.8-0.4
Distance traveled before self-admin0.50.61.8-0.4-0.6-1.4-0.0
Distance traveled after self-admin0.20.20.50.4-0.7-0.5-0.1
Delta time in closed arm before/after self-admin0.70.71.2-1.1-0.8-0.6-0.7
Delta time in open arm before/after self-admin0.50.50.9-0.8-0.6-0.0-0.9
Diff in mean of infusions in LGA sessions0.40.50.80.90.30.70.7
Extinction: sum of active levers before priming0.30.30.40.60.60.60.5
Active lever presses in extinction session 60.20.20.4-0.3-0.60.2-0.6
Delta distance traveled before/after self-admin0.20.20.50.7-0.20.60.1
Delta ambulatory time before/after self-admin0.70.81.51.20.21.00.7
Time in closed arm before self-admin1.01.11.81.31.00.21.3
Time in closed arm after self-admin0.30.41.00.1-0.6-1.00.1
Time in open arm before self-admin0.30.30.5-0.4-0.70.1-0.7
Time in open arm after self-admin0.50.60.9-0.8-0.80.2-1.0
Sum of active levers in priming session hrs 5-62.92.98.80.41.53.0-0.2
Time to tail flick, vehicle, before self-admin0.00.00.00.00.2-0.10.2
Time to tail flick, vehicle, after self-admin1.51.62.21.21.41.50.9
Time to tail flick, test, before self-admin1.91.95.90.10.72.4-1.1
Time to tail flick, test, after self-admin0.20.20.50.7-0.2-0.2-0.1
Delta time to tail flick, vehicle, before/after SA0.60.61.30.70.81.10.2
Delta time to tail flick, test, before/after SA1.91.75.1-0.1-1.2-2.30.3
Ambulatory time before self-admin1.81.93.2-1.2-1.3-1.8-1.0
Ambulatory time after self-admin0.40.40.80.3-0.9-0.9-0.2
Total heroin consumption0.00.00.1-0.3-0.20.0-0.1
Area under the delay curve1.11.21.9-1.00.31.3-1.4
Delay disc. indifference point, 0s delay0.60.71.60.70.71.3-0.3
Delay disc. indifference point, 16s delay0.80.82.0-0.80.61.4-0.6
Delay disc. indifference point, 2s delay0.60.71.6-0.7-0.10.8-1.3
Delay disc. indifference point, 24s delay0.70.71.8-1.3-0.6-0.3-0.8
Delay disc. indifference point, 4s delay1.31.43.6-1.2-0.60.4-1.9
Delay disc. indifference point, 8s delay1.01.13.0-0.30.81.7-0.7
Delay discount exponential model param1.21.32.21.2-0.2-1.21.5
Delay discount hyperbolic model param1.21.32.31.1-0.2-1.21.5
Fecal boli incidents, locomotor time 10.10.10.3-0.2-0.10.0-0.6
Change in fecal boli incidents, locomotor task0.30.31.00.00.31.00.2
Time >=10cm from walls, locomotor time 10.10.10.1-0.2-0.2-0.0-0.3
Bouts of movement, locomotor time 10.60.70.9-0.9-1.0-0.5-0.9
Total resting periods, locomotor time 10.20.30.4-0.4-0.6-0.4-0.5
Rest time, locomotor task time 10.30.30.7-0.4-0.20.6-0.8
Distance moved, locomotor task time 10.20.30.7-0.3-0.8-0.5-0.3
Vertical activity count, locomotor time 10.20.20.4-0.2-0.4-0.40.6
Time >=10cm from walls, locomotor time 20.00.00.00.00.00.10.2
Bouts of movement, locomotor time 21.11.21.6-1.2-0.9-1.0-1.3
Total resting periods, locomotor time 21.01.01.2-1.1-0.9-1.0-1.1
Rest time, locomotor task time 20.10.10.2-0.50.00.0-0.3
Distance moved, locomotor task time 20.10.10.30.5-0.10.20.2
Vertical activity count, locomotor time 21.11.21.51.10.91.21.2
Weight adjusted by age0.30.31.00.20.31.0-0.4
Seeking ratio, delayed vs. immediate footshock0.00.00.00.10.0-0.00.2
Locomotion in novel chamber1.41.83.3-1.5-1.2-0.2-1.8
Locomotion in novel chamber post-restriction1.31.54.70.61.02.20.1
Progressive ratio2.12.43.91.32.01.01.8
Food seeking constrained by brief footshock2.73.34.22.01.81.51.9
Seeking ratio, punishment vs. effort0.10.10.30.1-0.50.0-0.4
Run reversals in cocaine runway, females1.21.21.91.40.90.71.2
Run reversals in cocaine runway, males0.50.51.0-0.6-0.6-1.0-0.6
Latency to leave start box in cocaine runway1.21.32.30.7-0.4-1.51.5
Latency to leave start box in cocaine runway, F1.11.22.91.10.3-0.71.7
Latency to leave start box in cocaine runway, M1.41.43.4-0.3-1.4-1.9-0.1
Cd content in liver0.80.91.71.00.81.30.5
Co content in liver0.60.71.6-0.8-1.2-0.8-0.3
Cu content in liver0.20.20.50.30.40.70.0
Fe content in liver0.50.61.0-1.0-0.7-0.5-0.9
K content in liver1.31.32.90.91.20.11.7
Mg content in liver0.10.10.2-0.10.4-0.10.3
Mn content in liver0.00.00.0-0.00.1-0.0-0.1
Na content in liver0.30.30.6-0.5-0.4-0.8-0.3
Rb content in liver2.22.84.11.22.01.81.5
Se content in liver0.60.81.8-1.1-0.3-0.0-1.3
Sr content in liver0.20.20.30.6-0.0-0.20.5
Zn content in liver0.70.72.00.10.81.4-0.5