Inppl1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000019730 0.06 0.04 2.2e-05 0.03 0.03 0.02 0.03 4.7e-04 1.4e-04 8.7e-04 8.6e-04
2 Brain gene expression ENSRNOG00000019730 0.1 0.06 2.0e-07 0.06 0.08 0.08 0.08 5.3e-06 8.7e-08 4.1e-08 5.8e-08
3 IL intron excision ratio chr1:156186418:156186665 0.3 0.21 3.5e-03 0.01 0.05 0.02 0.05 1.5e-01 3.0e-02 8.8e-02 2.9e-02
4 NAcc gene expression ENSRNOG00000019730 0.08 0.06 1.1e-04 0.04 0.06 0.02 0.05 1.2e-03 5.5e-05 8.9e-03 1.5e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.13.76.22.11.9-0.82.5
BMI without tail0.40.81.30.8-1.10.90.8
Body weight0.10.51.4-0.5-1.20.4-0.5
Epididymis fat weight0.20.41.1-0.70.0-1.1-0.5
Glucose0.40.71.21.10.50.31.1
Heart weight0.50.71.90.5-0.81.40.3
Left kidney weight0.41.02.20.5-1.51.30.4
Right kidney weight0.20.51.6-0.0-1.30.7-0.1
Tail length4.212.827.9-2.1-5.33.2-2.9
Length with tail2.48.616.8-2.4-4.11.9-2.9
Length without tail0.20.30.5-0.70.4-0.7-0.5
Liver weight, left3.04.88.6-2.9-0.4-1.7-2.8
Liver weight, right3.96.411.7-3.4-0.8-1.6-3.3
Parametrial fat weight0.61.22.40.61.5-1.11.0
Retroperitoneal fat weight0.93.16.3-2.00.3-2.5-1.5
Intraocular pressure0.30.50.80.90.60.30.8
Extensor digitorum longus weight0.00.10.4-0.10.3-0.60.1
Soleus weight0.41.12.0-1.40.0-1.0-1.3
Tibialis anterior weight0.10.40.6-0.7-0.70.2-0.8
Tibia length0.30.82.30.2-0.91.5-0.1
Number of licking bursts2.42.85.8-1.21.9-2.4-0.7
Food consumed during 24 hour testing period1.82.14.71.5-0.62.21.1
Times rat made contact with spout0.30.40.6-0.80.1-0.6-0.7
Mean time between licks in bursts3.14.38.3-1.1-2.92.2-1.6
Mean num. licks in bursts1.82.24.60.9-1.82.10.5
Std. dev. time between licks in bursts1.31.52.1-1.3-1.40.6-1.5
Water consumed over 24 hours0.40.40.8-0.30.9-0.9-0.2
Indifference point 0 sec1.11.74.41.1-0.72.10.8
Indifference point AUC0.30.30.7-0.3-0.80.4-0.4
Indifference point function ln k0.30.40.50.70.40.60.6
Indifference point function log k0.30.40.50.70.40.60.6
Delay discounting total patch changes 0 sec0.91.53.51.2-0.61.90.9
Delay discounting total patch changes 12 sec0.60.81.6-0.2-1.31.1-0.4
Delay discounting total patch changes 18 sec0.40.51.40.3-0.81.20.1
Delay discounting total patch changes 24 sec0.40.51.1-0.1-1.01.1-0.3
Delay discounting total patch changes 6 sec0.30.51.00.7-0.51.00.5
Delay discounting time to switch 0 sec1.72.66.1-1.31.3-2.5-0.9
Delay discounting water rate 0 sec1.11.84.51.1-1.02.10.7
Delay discounting water rate 12 sec2.84.27.22.70.21.82.6
Delay discounting water rate 18 sec2.12.84.41.8-1.22.11.5
Delay discounting water rate 24 sec1.01.42.41.60.40.61.6
Delay discounting water rate 6 sec1.21.72.91.70.31.01.6
Locomotor activity0.40.60.80.9-0.50.80.8
Locomotor testing distance1.01.73.01.2-1.21.71.0
Locomotor testing rearing0.71.03.0-0.1-1.71.0-0.3
Light reinforcement 11.32.44.30.52.0-2.11.0
Light reinforcement 23.14.17.32.51.7-0.12.7
Reaction time number correct0.20.20.50.70.20.10.7
Reaction time mean minus median0.10.10.2-0.2-0.30.5-0.3
Reaction time mean minus median AUC0.10.10.30.0-0.40.6-0.1
Reaction time num false alarms2.02.84.9-1.90.7-2.2-1.5
Reaction time num false alarms AUC1.62.34.4-1.60.9-2.1-1.2
Reaction time trials correct on left0.20.20.50.70.20.10.7
Reaction time trials on left0.20.30.50.70.20.00.7
Reaction time mean1.82.53.8-2.00.3-1.8-1.7
Reaction time mean AUC2.02.63.9-2.00.4-1.9-1.7
Median of all reaction times2.33.14.8-2.10.4-2.2-1.7
Reaction time omissions0.30.51.6-0.30.3-1.3-0.0
Reaction time false alarm rate1.62.34.3-1.60.9-2.1-1.3
Reaction time premature initiation rate1.01.32.7-0.2-1.61.5-0.5
Reaction time premature initiations0.50.71.50.3-1.11.20.1
Std. dev. reaction times1.11.52.7-1.6-0.6-0.5-1.6
Reaction time trials completed0.20.30.50.70.20.00.7
Reaction time trials AUC0.10.20.30.50.00.00.6
Social response proportion0.40.41.0-0.30.6-1.0-0.1
Social responses0.70.91.4-1.20.2-1.1-1.0
Social time1.01.33.0-0.41.4-1.7-0.1
Conditioned locomotion0.70.81.5-1.20.1-0.7-1.1
Cocaine response after cond. corrected0.70.72.2-0.60.4-1.5-0.3
Cocaine response after cond. not corrected0.30.40.90.30.5-0.90.5
Cocaine response before conditioning2.02.54.02.0-0.01.61.8
Saline control response1.82.44.7-0.7-2.21.8-1.1
Condit. Reinf. active minus inactive responses4.35.311.60.6-3.03.4-0.0
Condit. Reinf. active-inactive response ratio1.21.32.40.7-1.31.60.5
Condit. Reinf. active responses4.76.514.90.4-3.33.9-0.4
Condit. Reinf. inactive responses2.12.66.0-0.2-2.02.5-0.7
Condit. Reinf. lever presses7.810.826.52.0-3.45.21.1
Condit. Reinf. lever reinforcers received5.17.216.80.5-3.44.1-0.2
Pavlov. Cond. lever latency9.412.829.3-2.83.3-5.4-1.9
Pavlov. Cond. magazine entry latency4.95.68.83.0-0.42.52.7
Pavlov. Cond. change in total contacts8.912.427.62.9-3.05.32.1
Pavlov. Cond. index score7.910.321.52.9-2.54.62.2
Pavlov. Cond. latency score7.69.619.03.0-2.14.42.4
Pavlov. Cond. lever contacts9.413.129.82.6-3.65.51.7
Pavlov. Cond. magazine entry number6.07.412.0-3.11.1-3.5-2.6
Pavlov. Cond. intertrial magazine entries1.41.82.8-1.5-1.5-0.0-1.7
Pavlov. Cond. lever-magazine prob. diff.7.59.720.42.8-2.54.52.1
Pavlov. Cond. response bias10.214.031.13.1-3.25.62.2
Conditioned reinforcement - actives0.30.30.50.6-0.20.70.5
Conditioned reinforcement - inactives0.80.91.5-1.2-0.2-1.0-1.1
Conditioned locomotion1.51.82.71.60.11.51.4
Intermittent access intake day 1-15 change2.42.43.81.91.20.91.9
Intermittent access intake escalation2.52.53.81.91.30.81.9
Intermittent access intake escalation 20.60.61.20.71.1-0.20.9
Intermitt. access day 1 inactive lever presses1.71.92.8-1.60.3-1.7-1.4
Intermitt. access day 15 inactive lever presses0.10.10.30.30.00.50.2
Intermitt. access escalation Index0.10.10.3-0.4-0.10.1-0.5
Intermittent access day 1 total infusions0.91.02.1-0.4-1.51.1-0.7
Intermittent access day 15 total infusions0.30.41.00.5-0.01.00.4
Intermittent access terminal intake (last 3 days)0.20.30.90.2-0.21.00.0
Intermittent access total infusions0.20.30.6-0.1-0.60.8-0.3
Intermittent access day 1 locomotion0.30.30.5-0.6-0.70.0-0.7
Intermittent access day 15 total locomotion0.80.81.41.20.10.91.1
Intermittent access total locomotion0.30.30.70.4-0.60.80.3
Intermittent access standard deviation0.70.81.70.71.3-0.30.8
Cocaine induced anxiety2.52.95.8-1.70.8-2.4-1.4
Post-drug Anxiety1.92.13.6-1.9-0.7-0.8-1.9
Baseline Anxiety1.51.63.2-0.2-1.61.8-0.6
Lifetime Intake0.40.51.40.3-0.71.20.1
Incentive Sensitization - Responses0.60.60.9-0.5-0.90.8-0.7
Incentive Sensitization - Breakpoint0.30.30.6-0.2-0.70.8-0.4
Progressive ratio test 1 active lever presses0.00.00.1-0.0-0.20.2-0.1
Progressive ratio test 1 breakpoint0.10.10.1-0.2-0.30.2-0.2
Progressive ratio test 1 inactive lever presses0.00.00.0-0.2-0.00.1-0.2
Progressive ratio test 2 active lever presses0.30.30.5-0.6-0.60.5-0.7
Progressive ratio test 2 breakpoint0.30.40.5-0.6-0.60.5-0.7
Progressive ratio test 2 inactive lever presses0.00.00.10.00.10.3-0.1
Total sessions with >9 infusions2.72.95.11.9-0.72.31.6
Short access day 1 total inactive lever presses0.91.01.6-1.30.2-0.9-1.3
Short access day 10 total inactive lever presses0.60.61.6-0.50.7-1.3-0.3
Short access day 1 total infusions1.11.12.30.2-1.41.5-0.1
Short access day 10 total infusions0.60.71.90.2-1.01.4-0.1
Short access total infusions0.70.82.00.4-1.01.40.1
Short access day 1 locomotion1.11.22.01.40.31.01.3
Short access day 10 total locomotion0.20.20.50.60.10.00.7
Short access total locomotion0.10.10.20.50.10.30.4
Compulsive drug intake0.30.30.60.30.8-0.70.4
One hour access (0.3 mA shock)0.50.60.90.90.01.00.9
One hour access (shock baseline)0.40.41.30.2-0.51.20.1
Number of responses in last shaping day1.11.11.9-1.3-1.0-0.1-1.4
Context. condit. distance diff. score2.63.26.01.6-1.52.41.3
Locomotion velocity, session 11.21.31.91.21.4-0.41.3
Locomotion distance, session 11.31.72.81.70.31.01.6
Locomotion velocity, session 20.91.12.01.30.60.31.4
Locomotion distance, session 21.11.62.91.60.60.71.7
Locomotion velocity, session 30.50.61.40.5-0.91.20.3
Locomotion distance, session 30.80.92.01.0-0.51.40.7
Stereotopy head waving bouts, day 30.40.50.9-1.0-0.2-0.4-1.0
Stereotopy head waving duration, day 30.20.20.30.60.20.40.5
Locomotion velocity, session 70.50.51.00.80.5-0.21.0
Locomotion distance, session 70.10.20.4-0.40.3-0.6-0.3
Stereotopy head waving bouts, day 71.92.25.91.2-1.02.40.7
Stereotopy head waving duration, day 72.02.56.21.4-0.82.51.0
Locomotion velocity, session 81.01.22.90.7-1.21.70.4
Locomotion distance, session 82.33.45.62.0-0.92.41.8
Degree of sensitization distance1.01.01.8-1.3-0.3-1.0-1.2
Degree of sensitization stereotypy4.04.311.31.6-1.63.41.0
Condit. Reinf. active minus inactive responses1.21.32.6-1.0-1.60.5-1.2
Condit. Reinf. active-inactive response ratio2.32.54.5-1.4-2.10.8-1.7
Condit. Reinf. active responses0.70.91.6-1.2-0.7-0.2-1.3
Condit. Reinf. inactive responses0.40.51.3-0.21.1-0.90.0
Incentive salience index mean0.60.81.3-1.0-0.90.1-1.1
Condit. Reinf. lever presses0.10.10.1-0.20.4-0.2-0.2
Time in familiar zone, hab. session 10.20.20.40.3-0.70.50.2
Time in novel zone, hab. session 10.50.50.7-0.8-0.3-0.6-0.8
Total zone transitions, hab. session 10.40.61.01.00.40.70.9
Total locomotion distance, hab. session 10.71.01.6-1.3-0.8-0.6-1.2
Locomotion velocity, hab. session 10.40.61.0-1.0-0.2-0.6-0.9
Time in familiar zone, hab. session 21.81.94.7-0.3-2.21.5-0.6
Time in novel zone, hab. session 21.91.93.91.12.0-0.91.4
Total zone transitions, hab. session 22.02.65.01.7-0.82.21.4
Total locomotion distance, hab. session 20.50.61.6-0.6-1.30.4-0.6
Locomotion velocity, hab. session 20.50.71.6-0.7-1.20.3-0.7
Novel to familiar place preference ratio1.61.73.3-1.7-0.8-0.1-1.8
Novelty place preference1.41.52.9-1.6-0.80.0-1.7
Time in novel zone, NPP test1.51.62.9-1.5-1.00.2-1.7
Total zone transitions, NPP test1.42.03.31.81.10.61.8
Total locomotion distance, NPP test0.20.30.60.20.6-0.70.5
Locomotion velocity, NPP test0.40.61.00.30.9-1.00.6
Pavlov. Cond. lever latency0.30.40.90.30.7-0.90.5
Pavlov. Cond. magazine entry latency1.62.04.50.8-1.72.10.4
Pavlov. Cond. change in total contacts1.11.11.8-0.6-1.31.2-1.0
Pavlov. Cond. index score1.01.33.40.4-1.31.80.0
Pavlov. Cond. latency score0.91.22.90.2-1.31.7-0.2
Pavlov. Cond. lever contacts0.30.40.9-0.1-0.71.0-0.3
Pavlov. Cond. magazine entry number1.41.84.4-0.81.4-2.1-0.4
Pavlov. Cond. intertrial magazine entries0.60.71.4-0.80.7-1.2-0.6
Pavlov. Cond. lever-magazine prob. diff.0.81.02.80.4-1.11.70.0
Pavlov. Cond. response bias0.40.51.20.3-0.91.10.0
Bone: apparent density0.10.10.6-0.10.8-0.1-0.0
Bone surface0.30.61.3-0.3-0.81.2-0.6
Bone volume0.20.40.7-0.4-0.50.8-0.6
Bone: connectivity density0.71.11.51.21.20.21.2
Bone: cortical apparent density1.21.62.8-1.40.2-1.7-1.2
Bone: cortical area0.20.30.5-0.5-0.70.6-0.6
Bone: cortical porosity0.10.20.3-0.2-0.30.5-0.4
Bone: cortical porosity0.20.20.2-0.3-0.40.4-0.5
Bone: cortical thickness0.20.40.70.40.8-0.50.6
Bone: cortical thickness0.00.00.0-0.0-0.00.1-0.0
Bone: cortical tissue density1.21.52.8-1.40.2-1.7-1.1
Bone: elastic displacement1.21.32.70.51.6-1.30.8
Bone: elastic work2.53.36.91.22.6-1.51.6
Bone: endosteal estimation0.92.03.4-1.0-1.81.4-1.3
Bone: endosteal perimeter0.91.93.2-0.6-1.81.8-1.0
Bone: final force1.22.03.7-1.9-0.5-0.6-1.9
Bone: final moment1.01.62.9-1.7-0.6-0.3-1.7
Bone: marrow area0.91.92.9-1.1-1.71.2-1.4
Bone: maximum diameter1.12.03.8-0.3-1.91.9-0.7
Bone: maximum force0.61.12.2-1.4-0.5-0.1-1.5
Bone: maximum moment0.40.61.2-1.0-0.50.2-1.1
Bone: minimum diameter0.91.72.4-1.4-1.50.6-1.5
Bone: periosteal estimation0.61.21.8-0.7-1.31.2-1.0
Bone: periosteal perimeter0.60.92.1-0.2-1.21.4-0.4
Bone: post-yield work0.10.20.30.1-0.60.60.0
Bone: stiffness2.64.17.6-2.7-0.7-0.9-2.7
Bone: tissue strength2.02.03.01.61.6-0.21.7
Bone: trabecular number0.50.82.30.31.5-0.90.5
Bone: trabecular spacing1.11.42.51.60.20.91.5
Bone: trabecular thickness1.72.13.9-1.9-0.9-0.3-2.0
Bone: trabecular tissue density4.66.411.2-3.3-1.1-1.6-3.3
Breakpoint value in progressive ratio session0.40.41.00.90.2-0.21.0
Distance traveled before self-admin0.60.61.20.21.0-1.10.5
Distance traveled after self-admin0.70.81.21.10.80.51.1
Delta time in closed arm before/after self-admin1.51.52.4-1.5-0.3-1.3-1.3
Delta time in open arm before/after self-admin1.21.13.2-0.0-1.01.8-0.4
Diff in mean of infusions in LGA sessions2.32.64.3-2.1-0.2-1.5-2.0
Extinction: sum of active levers before priming0.10.10.3-0.00.3-0.50.1
Active lever presses in extinction session 61.91.82.81.70.31.41.5
Delta distance traveled before/after self-admin1.41.53.8-0.1-1.42.0-0.6
Delta ambulatory time before/after self-admin1.11.13.40.2-1.11.8-0.2
Time in closed arm before self-admin2.22.54.01.9-0.22.01.6
Time in closed arm after self-admin0.20.20.5-0.40.5-0.7-0.3
Time in open arm before self-admin2.93.18.8-0.91.7-3.0-0.4
Time in open arm after self-admin0.20.20.4-0.6-0.2-0.1-0.6
Sum of active levers in priming session hrs 5-60.30.20.50.70.10.20.7
Time to tail flick, vehicle, before self-admin0.10.10.30.30.10.50.2
Time to tail flick, vehicle, after self-admin1.01.03.30.6-0.71.80.2
Time to tail flick, test, before self-admin1.01.02.1-0.1-1.31.4-0.5
Time to tail flick, test, after self-admin1.91.93.4-1.1-1.81.1-1.4
Delta time to tail flick, vehicle, before/after SA0.30.30.70.5-0.30.80.3
Delta time to tail flick, test, before/after SA0.20.20.4-0.20.6-0.6-0.0
Ambulatory time before self-admin0.50.61.30.10.9-1.10.4
Ambulatory time after self-admin0.40.50.70.80.10.80.7
Total heroin consumption0.60.81.11.1-0.30.91.0
Area under the delay curve0.80.91.2-1.10.9-0.8-1.0
Delay disc. indifference point, 0s delay0.10.20.50.3-0.20.70.2
Delay disc. indifference point, 16s delay1.31.32.4-1.50.3-0.7-1.5
Delay disc. indifference point, 2s delay0.40.40.8-0.7-0.20.6-0.9
Delay disc. indifference point, 24s delay1.61.52.2-1.50.4-1.5-1.2
Delay disc. indifference point, 4s delay0.40.40.6-0.6-0.50.6-0.7
Delay disc. indifference point, 8s delay0.40.40.6-0.50.8-0.6-0.4
Delay discount exponential model param0.80.91.11.0-1.10.90.9
Delay discount hyperbolic model param0.70.70.91.0-0.90.70.9
Fecal boli incidents, locomotor time 10.80.91.1-0.91.0-1.1-0.8
Change in fecal boli incidents, locomotor task0.10.10.30.1-0.60.10.1
Time >=10cm from walls, locomotor time 10.30.30.7-0.0-0.50.8-0.2
Bouts of movement, locomotor time 10.40.50.9-0.8-0.40.1-1.0
Total resting periods, locomotor time 10.20.20.3-0.50.2-0.2-0.6
Rest time, locomotor task time 10.30.30.6-0.7-0.30.2-0.8
Distance moved, locomotor task time 10.10.10.10.3-0.3-0.20.3
Vertical activity count, locomotor time 10.10.10.2-0.4-0.5-0.4-0.3
Time >=10cm from walls, locomotor time 21.61.73.3-0.6-1.81.5-1.0
Bouts of movement, locomotor time 22.93.14.8-2.1-1.9-0.1-2.2
Total resting periods, locomotor time 22.52.64.1-2.0-1.5-0.6-2.0
Rest time, locomotor task time 21.11.33.4-0.51.3-1.9-0.1
Distance moved, locomotor task time 21.11.33.10.5-1.31.80.2
Vertical activity count, locomotor time 20.60.71.0-0.9-0.90.3-1.0
Weight adjusted by age0.70.82.40.2-1.51.00.1
Seeking ratio, delayed vs. immediate footshock1.21.43.30.01.8-1.50.3
Locomotion in novel chamber1.11.42.11.21.4-0.51.4
Locomotion in novel chamber post-restriction1.01.21.81.30.41.31.1
Progressive ratio0.60.70.90.90.90.30.9
Food seeking constrained by brief footshock1.01.22.70.0-1.61.5-0.3
Seeking ratio, punishment vs. effort1.11.33.7-0.7-1.90.7-0.9
Run reversals in cocaine runway, females0.10.10.5-0.1-0.70.1-0.1
Run reversals in cocaine runway, males0.20.20.4-0.40.5-0.6-0.3
Latency to leave start box in cocaine runway0.60.61.0-0.9-0.3-1.0-0.7
Latency to leave start box in cocaine runway, F1.11.21.8-1.3-0.7-0.9-1.3
Latency to leave start box in cocaine runway, M0.20.20.30.20.4-0.60.3
Cd content in liver0.40.40.8-0.70.4-0.9-0.5
Co content in liver2.42.84.8-1.3-2.21.4-1.7
Cu content in liver1.31.63.1-1.0-1.71.0-1.2
Fe content in liver0.70.81.5-1.1-0.6-0.2-1.2
K content in liver0.50.51.1-0.50.6-1.0-0.3
Mg content in liver0.10.10.10.30.20.00.3
Mn content in liver1.11.32.60.31.6-1.40.6
Na content in liver0.20.20.60.30.10.80.2
Rb content in liver0.40.50.8-0.4-0.90.8-0.6
Se content in liver2.12.55.3-1.11.7-2.3-0.7
Sr content in liver2.42.23.71.91.10.51.9
Zn content in liver2.22.44.01.8-0.32.01.5