Pc

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000019372 0.26 0.12 2.9e-04 0.01 0.04 0.04 0.01 1.7e-02 4.4e-05 6.6e-05 1.6e-02
2 Brain gene expression ENSRNOG00000019372 0.06 0.05 1.4e-03 0.01 0.03 0.02 0.01 7.7e-02 1.8e-03 2.9e-03 2.4e-02
3 LHb intron excision ratio chr1:201799513:201879025 0.28 0.16 2.0e-03 0.1 0.13 0.09 0.1 2.8e-03 6.5e-04 3.6e-03 1.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail2.99.316.10.7-3.44.0
BMI without tail0.91.93.50.3-1.51.9
Body weight1.66.99.93.1-1.52.9
Epididymis fat weight1.12.76.8-2.6-0.0-1.1
Glucose1.92.97.0-2.6-1.30.4
Heart weight1.11.64.1-2.00.0-0.8
Left kidney weight0.51.32.2-0.91.0-1.5
Right kidney weight0.20.71.20.10.9-1.1
Tail length1.02.93.81.82.0-1.3
Length with tail1.34.612.63.61.00.4
Length without tail1.32.96.92.6-0.21.3
Liver weight, left0.30.40.7-0.50.7-0.8
Liver weight, right0.30.50.70.10.8-0.9
Parametrial fat weight1.32.57.1-2.7-0.5-0.3
Retroperitoneal fat weight2.27.418.2-4.30.3-2.0
Intraocular pressure0.60.81.10.61.1-1.0
Extensor digitorum longus weight3.313.330.35.5-0.63.0
Soleus weight2.26.39.1-2.61.7-3.0
Tibialis anterior weight5.217.848.87.00.92.0
Tibia length0.61.85.12.30.40.3
Number of licking bursts0.20.20.40.2-0.50.6
Food consumed during 24 hour testing period0.10.10.20.40.2-0.2
Times rat made contact with spout0.40.50.80.1-0.80.9
Mean time between licks in bursts0.10.10.20.40.5-0.2
Mean num. licks in bursts0.10.10.2-0.5-0.0-0.1
Std. dev. time between licks in bursts1.61.93.20.41.8-1.5
Water consumed over 24 hours0.30.30.60.3-0.50.8
Indifference point 0 sec0.10.10.3-0.3-0.50.2
Indifference point AUC2.32.77.12.7-0.11.0
Indifference point function ln k4.97.011.5-3.41.4-2.7
Indifference point function log k4.97.011.5-3.41.4-2.7
Delay discounting total patch changes 0 sec0.00.00.10.10.1-0.3
Delay discounting total patch changes 12 sec3.03.97.82.8-0.81.8
Delay discounting total patch changes 18 sec0.70.91.11.1-0.71.1
Delay discounting total patch changes 24 sec1.21.54.22.10.20.5
Delay discounting total patch changes 6 sec0.81.21.90.8-1.01.4
Delay discounting time to switch 0 sec3.24.98.20.5-2.52.9
Delay discounting water rate 0 sec4.06.310.9-1.02.7-3.3
Delay discounting water rate 12 sec7.611.419.1-2.03.4-4.4
Delay discounting water rate 18 sec2.73.55.0-1.71.6-2.2
Delay discounting water rate 24 sec4.25.79.5-1.22.5-3.1
Delay discounting water rate 6 sec4.15.99.8-0.72.7-3.1
Locomotor activity2.33.65.3-1.61.7-2.3
Locomotor testing distance3.05.07.2-2.02.0-2.7
Locomotor testing rearing1.62.55.4-2.30.6-1.3
Light reinforcement 10.20.30.5-0.20.5-0.7
Light reinforcement 20.30.40.8-0.90.1-0.6
Reaction time number correct0.71.02.01.40.9-0.4
Reaction time mean minus median1.62.13.61.0-1.31.9
Reaction time mean minus median AUC0.50.71.41.2-0.20.8
Reaction time num false alarms1.31.82.80.21.7-1.6
Reaction time num false alarms AUC0.81.11.80.71.3-1.0
Reaction time trials correct on left0.71.02.01.40.9-0.4
Reaction time trials on left0.81.12.41.51.0-0.4
Reaction time mean0.30.40.5-0.7-0.60.4
Reaction time mean AUC0.40.50.8-0.9-0.80.5
Median of all reaction times0.40.61.4-1.2-0.60.2
Reaction time omissions0.60.91.91.4-0.10.8
Reaction time false alarm rate0.50.71.0-0.11.0-1.0
Reaction time premature initiation rate0.40.51.21.10.40.3
Reaction time premature initiations1.31.84.62.10.90.1
Std. dev. reaction times0.50.61.10.2-0.91.1
Reaction time trials completed0.81.12.41.51.0-0.4
Reaction time trials AUC0.60.91.61.30.9-0.4
Social response proportion1.21.32.10.4-1.21.5
Social responses0.30.30.91.00.10.3
Social time0.10.20.50.70.10.2
Conditioned locomotion2.12.56.52.61.1-0.1
Cocaine response after cond. corrected0.60.60.8-0.90.6-0.9
Cocaine response after cond. not corrected0.50.61.5-1.20.1-0.5
Cocaine response before conditioning0.60.81.30.1-1.01.1
Saline control response1.31.72.41.6-0.71.5
Condit. Reinf. active minus inactive responses1.41.82.4-1.5-1.50.9
Condit. Reinf. active-inactive response ratio1.11.22.4-1.5-1.00.4
Condit. Reinf. active responses1.92.63.9-1.1-2.01.6
Condit. Reinf. inactive responses1.21.42.40.0-1.41.6
Condit. Reinf. lever presses2.02.84.60.9-1.72.2
Condit. Reinf. lever reinforcers received1.92.74.0-0.8-2.01.8
Pavlov. Cond. lever latency0.50.71.0-0.70.8-1.0
Pavlov. Cond. magazine entry latency3.13.55.81.2-1.82.4
Pavlov. Cond. change in total contacts2.63.65.70.9-2.12.4
Pavlov. Cond. index score2.22.84.51.2-1.62.1
Pavlov. Cond. latency score1.82.33.61.1-1.51.9
Pavlov. Cond. lever contacts0.30.40.70.9-0.30.6
Pavlov. Cond. magazine entry number4.55.69.1-1.62.2-3.0
Pavlov. Cond. intertrial magazine entries0.60.81.1-1.00.6-1.1
Pavlov. Cond. lever-magazine prob. diff.2.53.25.11.3-1.72.2
Pavlov. Cond. response bias1.31.82.81.0-1.21.7
Conditioned reinforcement - actives0.10.10.30.10.4-0.5
Conditioned reinforcement - inactives2.83.17.7-2.80.2-1.3
Conditioned locomotion4.75.67.7-2.61.6-2.8
Intermittent access intake day 1-15 change0.50.50.9-0.10.7-0.9
Intermittent access intake escalation0.20.20.4-0.40.3-0.6
Intermittent access intake escalation 20.40.40.8-0.10.7-0.9
Intermitt. access day 1 inactive lever presses0.80.92.5-1.6-0.3-0.3
Intermitt. access day 15 inactive lever presses0.80.82.2-1.5-0.5-0.2
Intermitt. access escalation Index1.11.01.9-1.40.4-1.0
Intermittent access day 1 total infusions6.06.816.1-4.0-1.90.6
Intermittent access day 15 total infusions4.14.612.8-3.6-0.7-0.7
Intermittent access terminal intake (last 3 days)3.53.810.3-3.2-1.1-0.1
Intermittent access total infusions3.53.88.9-3.0-1.50.5
Intermittent access day 1 locomotion4.44.59.2-3.0-1.81.0
Intermittent access day 15 total locomotion2.42.57.0-2.7-0.7-0.2
Intermittent access total locomotion5.36.014.4-3.8-1.80.6
Intermittent access standard deviation0.40.50.6-0.80.4-0.8
Cocaine induced anxiety0.00.00.00.10.1-0.1
Post-drug Anxiety1.01.13.11.80.30.3
Baseline Anxiety1.31.43.92.00.30.4
Lifetime Intake3.23.68.3-2.9-1.50.5
Incentive Sensitization - Responses0.40.40.5-0.6-0.70.4
Incentive Sensitization - Breakpoint0.30.30.6-0.8-0.60.3
Progressive ratio test 1 active lever presses1.01.13.0-1.7-0.2-0.4
Progressive ratio test 1 breakpoint0.80.92.4-1.5-0.0-0.5
Progressive ratio test 1 inactive lever presses0.50.61.6-1.3-0.3-0.1
Progressive ratio test 2 active lever presses1.61.84.9-2.2-0.5-0.3
Progressive ratio test 2 breakpoint1.82.05.1-2.20.1-1.0
Progressive ratio test 2 inactive lever presses4.55.214.5-3.8-0.7-0.7
Total sessions with >9 infusions0.80.92.3-1.5-0.60.1
Short access day 1 total inactive lever presses2.32.56.8-2.6-0.1-0.9
Short access day 10 total inactive lever presses1.61.83.8-1.90.4-1.2
Short access day 1 total infusions2.62.76.6-2.6-1.20.3
Short access day 10 total infusions4.75.16.3-2.5-2.51.8
Short access total infusions2.12.34.4-2.1-1.40.8
Short access day 1 locomotion1.92.03.4-1.8-1.40.8
Short access day 10 total locomotion1.61.72.6-1.6-1.40.9
Short access total locomotion1.71.72.6-1.6-1.40.9
Compulsive drug intake1.91.94.82.20.9-0.1
One hour access (0.3 mA shock)4.45.113.6-3.7-0.2-1.3
One hour access (shock baseline)3.54.111.3-3.4-0.5-0.8
Number of responses in last shaping day0.70.71.0-0.90.6-1.0
Context. condit. distance diff. score1.21.43.1-1.80.4-1.0
Locomotion velocity, session 10.40.50.6-0.60.6-0.8
Locomotion distance, session 11.21.52.1-0.6-1.41.4
Locomotion velocity, session 21.21.52.31.5-0.61.3
Locomotion distance, session 20.60.91.60.4-1.01.3
Locomotion velocity, session 30.81.01.9-1.4-0.90.5
Locomotion distance, session 30.10.10.3-0.6-0.1-0.0
Stereotopy head waving bouts, day 31.01.23.3-1.8-0.5-0.1
Stereotopy head waving duration, day 30.81.02.7-1.6-0.5-0.1
Locomotion velocity, session 70.70.81.2-1.1-0.90.6
Locomotion distance, session 70.00.00.0-0.0-0.10.1
Stereotopy head waving bouts, day 71.11.31.7-1.2-1.30.9
Stereotopy head waving duration, day 72.22.74.4-0.0-1.92.1
Locomotion velocity, session 80.20.20.50.70.30.1
Locomotion distance, session 80.30.41.1-1.1-0.3-0.0
Degree of sensitization distance0.10.10.20.0-0.40.5
Degree of sensitization stereotypy1.21.32.10.1-1.31.5
Condit. Reinf. active minus inactive responses0.50.60.9-0.2-0.90.9
Condit. Reinf. active-inactive response ratio0.40.40.6-0.4-0.80.6
Condit. Reinf. active responses0.20.30.40.1-0.70.6
Condit. Reinf. inactive responses0.00.00.10.2-0.20.2
Incentive salience index mean0.60.71.10.1-1.01.0
Condit. Reinf. lever presses0.30.40.70.8-0.40.6
Time in familiar zone, hab. session 10.40.40.6-0.6-0.80.4
Time in novel zone, hab. session 10.90.81.3-0.41.1-1.1
Total zone transitions, hab. session 10.30.40.70.5-0.60.9
Total locomotion distance, hab. session 10.20.30.8-0.9-0.2-0.2
Locomotion velocity, hab. session 10.00.00.1-0.3-0.20.1
Time in familiar zone, hab. session 20.90.91.40.81.2-0.9
Time in novel zone, hab. session 21.21.31.8-0.8-1.41.1
Total zone transitions, hab. session 23.64.77.3-0.4-2.62.7
Total locomotion distance, hab. session 21.01.41.9-0.9-1.41.1
Locomotion velocity, hab. session 21.11.42.0-1.1-1.41.1
Novel to familiar place preference ratio1.51.62.50.4-1.41.6
Novelty place preference1.21.21.90.0-1.41.4
Time in novel zone, NPP test1.01.01.6-0.1-1.21.2
Total zone transitions, NPP test1.21.73.00.4-1.41.7
Total locomotion distance, NPP test0.20.30.4-0.6-0.60.4
Locomotion velocity, NPP test0.20.20.3-0.4-0.50.4
Pavlov. Cond. lever latency0.20.20.4-0.40.4-0.6
Pavlov. Cond. magazine entry latency1.21.62.4-0.6-1.61.4
Pavlov. Cond. change in total contacts0.80.81.3-0.4-1.21.0
Pavlov. Cond. index score0.10.20.20.2-0.40.5
Pavlov. Cond. latency score0.10.20.2-0.1-0.50.5
Pavlov. Cond. lever contacts0.00.00.0-0.0-0.10.2
Pavlov. Cond. magazine entry number0.20.20.2-0.50.4-0.5
Pavlov. Cond. intertrial magazine entries0.30.30.50.20.7-0.7
Pavlov. Cond. lever-magazine prob. diff.0.20.30.40.3-0.60.7
Pavlov. Cond. response bias0.10.10.10.2-0.40.4
Bone: apparent density2.84.76.9-0.7-2.62.5
Bone surface4.68.113.80.9-3.13.7
Bone volume3.35.68.90.0-2.83.0
Bone: connectivity density3.85.910.00.3-2.83.2
Bone: cortical apparent density0.20.30.60.80.4-0.1
Bone: cortical area0.50.72.11.40.40.2
Bone: cortical porosity0.40.40.60.0-0.80.8
Bone: cortical porosity0.40.50.70.5-0.60.9
Bone: cortical thickness2.74.410.73.31.6-0.2
Bone: cortical thickness1.21.52.11.31.5-0.8
Bone: cortical tissue density0.30.30.70.90.5-0.1
Bone: elastic displacement3.03.45.20.52.3-2.2
Bone: elastic work1.52.02.71.71.6-0.9
Bone: endosteal estimation1.12.44.9-2.2-1.50.5
Bone: endosteal perimeter2.34.77.8-2.8-2.31.0
Bone: final force0.91.52.01.4-0.71.4
Bone: final moment0.81.31.81.3-0.71.3
Bone: marrow area1.12.45.0-2.2-1.40.5
Bone: maximum diameter0.10.10.10.3-0.30.3
Bone: maximum force2.54.47.60.8-2.32.8
Bone: maximum moment2.23.86.40.7-2.12.5
Bone: minimum diameter1.63.04.0-2.0-1.91.1
Bone: periosteal estimation0.10.20.3-0.3-0.60.4
Bone: periosteal perimeter0.50.81.4-0.3-1.21.0
Bone: post-yield work9.212.519.8-1.6-4.53.9
Bone: stiffness2.84.57.50.5-2.42.7
Bone: tissue strength0.40.40.7-0.2-0.80.7
Bone: trabecular number2.94.56.9-0.3-2.62.6
Bone: trabecular spacing0.70.91.40.01.2-1.2
Bone: trabecular thickness1.61.92.4-1.5-1.61.0
Bone: trabecular tissue density1.92.64.4-1.41.2-2.1
Breakpoint value in progressive ratio session1.82.03.51.9-0.61.4
Distance traveled before self-admin0.10.20.30.3-0.40.5
Distance traveled after self-admin0.10.20.20.4-0.40.4
Delta time in closed arm before/after self-admin0.70.70.90.91.0-0.6
Delta time in open arm before/after self-admin0.10.10.1-0.2-0.30.2
Diff in mean of infusions in LGA sessions0.50.61.61.30.30.2
Extinction: sum of active levers before priming3.33.34.32.1-1.22.1
Active lever presses in extinction session 62.32.26.32.50.40.3
Delta distance traveled before/after self-admin0.00.00.00.10.1-0.2
Delta ambulatory time before/after self-admin0.10.10.10.30.3-0.3
Time in closed arm before self-admin0.30.30.6-0.4-0.70.5
Time in closed arm after self-admin0.00.00.10.30.10.0
Time in open arm before self-admin0.60.61.0-0.21.0-0.9
Time in open arm after self-admin0.30.40.6-0.20.7-0.8
Sum of active levers in priming session hrs 5-62.32.26.02.40.9-0.2
Time to tail flick, vehicle, before self-admin0.80.81.1-0.3-1.11.0
Time to tail flick, vehicle, after self-admin0.91.01.41.1-0.61.2
Time to tail flick, test, before self-admin1.61.63.6-1.9-0.90.5
Time to tail flick, test, after self-admin0.10.10.20.40.10.1
Delta time to tail flick, vehicle, before/after SA0.60.61.01.0-0.40.8
Delta time to tail flick, test, before/after SA3.22.96.52.51.3-0.6
Ambulatory time before self-admin0.40.50.80.2-0.70.9
Ambulatory time after self-admin0.91.01.7-0.8-1.30.9
Total heroin consumption2.53.06.52.6-0.51.5
Area under the delay curve1.11.12.4-1.5-0.80.5
Delay disc. indifference point, 0s delay2.02.26.5-2.5-0.4-0.2
Delay disc. indifference point, 16s delay0.70.71.1-1.0-0.90.4
Delay disc. indifference point, 2s delay0.80.92.4-1.6-0.40.0
Delay disc. indifference point, 24s delay0.30.30.5-0.00.7-0.7
Delay disc. indifference point, 4s delay0.50.51.5-1.2-0.2-0.0
Delay disc. indifference point, 8s delay0.60.61.6-1.3-0.30.1
Delay discount exponential model param0.80.81.91.40.7-0.4
Delay discount hyperbolic model param0.80.81.91.40.6-0.4
Fecal boli incidents, locomotor time 10.30.30.60.8-0.40.5
Change in fecal boli incidents, locomotor task0.10.10.3-0.6-0.20.1
Time >=10cm from walls, locomotor time 13.43.44.5-1.9-2.11.4
Bouts of movement, locomotor time 11.61.74.32.1-0.20.9
Total resting periods, locomotor time 11.51.63.81.9-0.41.0
Rest time, locomotor task time 10.91.01.6-0.80.9-1.3
Distance moved, locomotor task time 10.70.81.2-0.3-1.11.0
Vertical activity count, locomotor time 10.80.81.8-1.40.2-0.7
Time >=10cm from walls, locomotor time 20.10.10.1-0.1-0.30.3
Bouts of movement, locomotor time 20.50.50.90.9-0.30.8
Total resting periods, locomotor time 20.30.40.60.6-0.50.7
Rest time, locomotor task time 21.82.15.1-2.20.1-1.0
Distance moved, locomotor task time 20.70.92.31.50.10.5
Vertical activity count, locomotor time 21.92.13.11.11.8-1.4
Weight adjusted by age1.31.53.71.9-0.20.9
Seeking ratio, delayed vs. immediate footshock0.70.80.9-0.9-1.00.8
Locomotion in novel chamber3.64.411.2-3.40.1-1.4
Locomotion in novel chamber post-restriction1.82.14.3-2.10.5-1.3
Progressive ratio3.23.86.2-0.1-2.22.5
Food seeking constrained by brief footshock0.10.10.10.30.3-0.1
Seeking ratio, punishment vs. effort2.93.55.9-0.22.2-2.4
Run reversals in cocaine runway, females0.80.81.2-0.2-1.01.1
Run reversals in cocaine runway, males2.32.33.60.31.9-1.8
Latency to leave start box in cocaine runway1.11.21.7-0.9-1.31.0
Latency to leave start box in cocaine runway, F0.60.70.8-0.9-0.90.7
Latency to leave start box in cocaine runway, M0.10.10.1-0.1-0.40.3
Cd content in liver0.80.81.3-0.90.7-1.1
Co content in liver2.83.35.4-0.32.1-2.3
Cu content in liver0.20.30.40.6-0.30.6
Fe content in liver0.00.00.00.20.2-0.0
K content in liver2.32.33.80.5-1.62.0
Mg content in liver3.53.65.6-0.9-2.42.1
Mn content in liver2.02.33.11.7-1.01.8
Na content in liver0.30.30.91.00.4-0.0
Rb content in liver1.82.25.2-2.3-1.10.2
Se content in liver1.21.42.0-0.7-1.41.3
Sr content in liver1.71.64.42.10.60.3
Zn content in liver0.91.01.71.3-0.51.0