Mchr1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000018895 0.07 0.05 3.1e-03 0.01 0.03 -0 0.03 9.9e-02 1.7e-02 5.1e-01 1.2e-02
2 Brain gene expression ENSRNOG00000018895 0.1 0.05 7.4e-07 0.04 0.07 0.09 0.05 6.6e-05 1.8e-07 1.2e-08 2.1e-05
3 PL gene expression ENSRNOG00000018895 0.07 0.04 5.8e-05 0.03 0.04 0.07 0.04 1.2e-03 3.8e-04 5.2e-06 2.7e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.65.28.32.62.9-0.6
BMI without tail0.30.70.90.71.00.8
Body weight1.45.710.13.22.60.5
Epididymis fat weight3.68.413.72.81.93.7
Glucose0.10.10.2-0.10.20.5
Heart weight1.21.73.51.91.20.3
Left kidney weight4.914.130.85.53.01.6
Right kidney weight4.813.832.85.72.90.2
Tail length0.51.53.8-0.4-0.81.9
Length with tail0.31.31.71.30.71.3
Length without tail0.51.12.41.60.9-0.3
Liver weight, left1.52.43.71.21.41.9
Liver weight, right3.86.39.22.13.02.3
Parametrial fat weight0.10.30.50.5-0.20.7
Retroperitoneal fat weight2.89.316.34.02.72.1
Intraocular pressure1.01.42.10.5-1.41.3
Extensor digitorum longus weight0.00.10.3-0.50.4-0.1
Soleus weight0.71.93.1-1.3-1.0-1.8
Tibialis anterior weight0.41.41.8-1.3-0.7-1.3
Tibia length0.20.61.51.20.4-0.3
Number of licking bursts0.91.02.2-1.5-0.9-0.2
Food consumed during 24 hour testing period1.01.22.91.70.6-0.5
Times rat made contact with spout0.40.41.10.40.2-1.1
Mean time between licks in bursts0.40.50.9-0.90.70.5
Mean num. licks in bursts1.21.53.11.81.1-0.1
Std. dev. time between licks in bursts1.51.72.1-1.5-1.0-1.4
Water consumed over 24 hours0.50.61.50.6-0.0-1.2
Indifference point 0 sec0.40.61.5-0.4-0.3-1.2
Indifference point AUC1.92.25.0-1.1-2.2-0.7
Indifference point function ln k2.53.57.41.82.70.1
Indifference point function log k2.53.57.41.82.70.1
Delay discounting total patch changes 0 sec0.30.40.8-0.5-0.5-0.9
Delay discounting total patch changes 12 sec0.30.40.6-0.0-0.8-0.8
Delay discounting total patch changes 18 sec0.91.22.7-0.3-1.7-0.9
Delay discounting total patch changes 24 sec0.81.12.3-0.8-1.5-0.4
Delay discounting total patch changes 6 sec2.74.16.6-0.9-2.2-2.6
Delay discounting time to switch 0 sec0.20.40.60.60.40.8
Delay discounting water rate 0 sec0.81.23.4-0.2-0.4-1.8
Delay discounting water rate 12 sec0.20.30.5-0.70.5-0.4
Delay discounting water rate 18 sec0.70.91.4-1.2-0.7-0.9
Delay discounting water rate 24 sec0.20.30.60.50.8-0.1
Delay discounting water rate 6 sec0.60.81.7-1.30.7-0.5
Locomotor activity1.42.13.71.61.9-0.5
Locomotor testing distance0.50.91.7-0.30.9-1.3
Locomotor testing rearing0.60.91.71.31.00.1
Light reinforcement 10.10.10.3-0.3-0.50.1
Light reinforcement 22.12.83.41.41.81.8
Reaction time number correct0.50.81.5-1.2-0.10.9
Reaction time mean minus median0.30.50.80.20.70.9
Reaction time mean minus median AUC1.11.42.01.01.41.0
Reaction time num false alarms1.11.53.9-0.1-0.72.0
Reaction time num false alarms AUC1.21.63.9-0.4-0.92.0
Reaction time trials correct on left0.50.81.5-1.2-0.10.9
Reaction time trials on left0.60.91.7-1.3-0.21.0
Reaction time mean0.30.31.0-0.10.21.0
Reaction time mean AUC0.20.30.8-0.20.10.9
Median of all reaction times0.20.30.8-0.40.00.9
Reaction time omissions0.81.12.5-0.8-0.51.6
Reaction time false alarm rate0.50.71.70.3-0.61.3
Reaction time premature initiation rate1.11.53.10.1-1.2-1.8
Reaction time premature initiations0.50.71.2-0.3-1.1-0.9
Std. dev. reaction times0.50.71.40.50.71.2
Reaction time trials completed0.60.91.7-1.3-0.21.0
Reaction time trials AUC0.50.71.1-1.0-0.11.1
Social response proportion0.50.51.01.00.70.0
Social responses0.50.61.4-0.5-1.2-0.4
Social time1.52.02.9-1.7-1.3-1.2
Conditioned locomotion1.11.23.30.70.11.8
Cocaine response after cond. corrected0.30.40.70.2-0.8-0.7
Cocaine response after cond. not corrected0.10.10.20.2-0.5-0.4
Cocaine response before conditioning0.20.20.4-0.30.70.4
Saline control response0.20.20.6-0.20.30.8
Condit. Reinf. active minus inactive responses1.21.53.5-0.8-0.6-1.9
Condit. Reinf. active-inactive response ratio0.70.72.2-0.00.0-1.5
Condit. Reinf. active responses0.40.61.7-0.2-0.3-1.3
Condit. Reinf. inactive responses0.10.10.10.2-0.2-0.4
Condit. Reinf. lever presses0.60.81.4-0.80.5-1.2
Condit. Reinf. lever reinforcers received0.50.61.8-0.3-0.2-1.3
Pavlov. Cond. lever latency0.70.91.10.9-0.91.0
Pavlov. Cond. magazine entry latency1.61.92.4-1.5-1.1-1.4
Pavlov. Cond. change in total contacts1.52.05.6-0.40.6-2.4
Pavlov. Cond. index score1.21.52.6-1.40.3-1.6
Pavlov. Cond. latency score1.51.93.3-1.50.1-1.8
Pavlov. Cond. lever contacts0.81.21.7-0.81.3-1.0
Pavlov. Cond. magazine entry number0.81.01.91.00.31.4
Pavlov. Cond. intertrial magazine entries0.60.81.81.30.6-0.4
Pavlov. Cond. lever-magazine prob. diff.1.01.32.0-1.30.3-1.4
Pavlov. Cond. response bias0.81.12.1-0.80.8-1.4
Conditioned reinforcement - actives0.70.71.9-0.3-1.40.2
Conditioned reinforcement - inactives1.72.04.5-0.9-0.8-2.1
Conditioned locomotion1.01.32.80.9-0.4-1.7
Intermittent access intake day 1-15 change0.60.61.3-1.1-0.2-0.7
Intermittent access intake escalation0.60.61.3-1.1-0.2-0.6
Intermittent access intake escalation 20.20.20.4-0.60.2-0.3
Intermitt. access day 1 inactive lever presses1.11.23.00.7-0.3-1.7
Intermitt. access day 15 inactive lever presses2.52.88.2-0.1-0.1-2.9
Intermitt. access escalation Index0.40.40.8-0.20.5-0.9
Intermittent access day 1 total infusions0.60.61.00.8-1.00.5
Intermittent access day 15 total infusions0.80.91.5-0.5-1.2-0.9
Intermittent access terminal intake (last 3 days)0.10.10.2-0.3-0.50.1
Intermittent access total infusions0.30.30.80.4-0.9-0.3
Intermittent access day 1 locomotion1.11.12.60.8-0.4-1.6
Intermittent access day 15 total locomotion0.50.50.80.5-0.6-0.9
Intermittent access total locomotion0.70.81.00.9-0.7-1.0
Intermittent access standard deviation0.30.30.60.8-0.0-0.6
Cocaine induced anxiety1.82.13.11.81.7-0.5
Post-drug Anxiety0.60.60.70.90.7-0.8
Baseline Anxiety1.61.73.4-1.9-1.2-0.4
Lifetime Intake0.60.60.90.9-0.9-0.5
Incentive Sensitization - Responses0.70.70.9-1.0-0.6-0.9
Incentive Sensitization - Breakpoint0.50.50.6-0.8-0.5-0.8
Progressive ratio test 1 active lever presses0.40.40.90.5-0.9-0.1
Progressive ratio test 1 breakpoint0.20.30.70.3-0.8-0.1
Progressive ratio test 1 inactive lever presses0.10.10.30.6-0.0-0.1
Progressive ratio test 2 active lever presses1.01.12.6-0.5-1.6-0.7
Progressive ratio test 2 breakpoint1.01.13.0-0.2-1.7-0.6
Progressive ratio test 2 inactive lever presses1.82.04.4-1.0-2.1-0.9
Total sessions with >9 infusions0.80.91.71.3-0.5-0.9
Short access day 1 total inactive lever presses2.62.96.50.1-1.5-2.5
Short access day 10 total inactive lever presses1.01.13.00.10.7-1.7
Short access day 1 total infusions0.50.61.00.9-0.0-1.0
Short access day 10 total infusions1.71.93.51.9-1.01.1
Short access total infusions1.21.33.41.8-0.6-0.3
Short access day 1 locomotion0.10.10.10.20.3-0.2
Short access day 10 total locomotion0.40.41.10.3-0.0-1.1
Short access total locomotion0.90.92.41.5-0.3-0.5
Compulsive drug intake3.53.54.8-2.0-2.2-1.2
One hour access (0.3 mA shock)1.61.83.3-0.8-1.81.2
One hour access (shock baseline)1.01.13.00.60.11.7
Number of responses in last shaping day3.43.46.2-0.3-2.5-2.0
Context. condit. distance diff. score5.77.010.03.22.02.7
Locomotion velocity, session 10.91.01.7-0.7-1.3-0.8
Locomotion distance, session 13.95.16.6-2.5-2.6-1.6
Locomotion velocity, session 20.10.10.20.4-0.0-0.3
Locomotion distance, session 25.07.110.2-2.3-3.2-2.4
Locomotion velocity, session 30.50.60.90.21.00.9
Locomotion distance, session 31.31.42.8-1.7-0.90.7
Stereotopy head waving bouts, day 30.50.61.41.20.1-0.7
Stereotopy head waving duration, day 31.82.25.32.31.2-0.2
Locomotion velocity, session 70.20.30.50.5-0.20.7
Locomotion distance, session 71.21.54.3-0.3-2.10.4
Stereotopy head waving bouts, day 72.32.63.31.81.61.3
Stereotopy head waving duration, day 73.74.57.01.92.61.7
Locomotion velocity, session 80.60.72.01.4-0.4-0.1
Locomotion distance, session 80.60.91.31.10.11.1
Degree of sensitization distance1.61.64.82.20.20.1
Degree of sensitization stereotypy2.12.32.41.41.61.5
Condit. Reinf. active minus inactive responses0.20.20.4-0.7-0.1-0.3
Condit. Reinf. active-inactive response ratio0.40.40.60.10.80.7
Condit. Reinf. active responses0.60.82.3-1.5-0.2-0.0
Condit. Reinf. inactive responses1.11.33.6-1.9-0.50.0
Incentive salience index mean0.40.51.0-1.0-0.2-0.8
Condit. Reinf. lever presses0.50.71.2-1.1-0.4-0.9
Time in familiar zone, hab. session 10.90.81.3-0.3-1.1-1.0
Time in novel zone, hab. session 11.91.82.41.11.51.3
Total zone transitions, hab. session 12.63.79.0-3.0-1.3-0.6
Total locomotion distance, hab. session 11.52.25.9-2.4-0.70.4
Locomotion velocity, hab. session 11.82.66.6-2.6-1.10.1
Time in familiar zone, hab. session 21.31.42.9-0.31.71.1
Time in novel zone, hab. session 21.21.23.10.3-1.8-0.8
Total zone transitions, hab. session 22.53.34.0-1.7-1.7-2.0
Total locomotion distance, hab. session 21.21.62.1-1.4-1.3-1.1
Locomotion velocity, hab. session 21.92.63.4-1.8-1.8-1.1
Novel to familiar place preference ratio1.81.92.61.61.21.3
Novelty place preference2.62.73.41.81.51.6
Time in novel zone, NPP test3.23.34.12.01.71.8
Total zone transitions, NPP test3.04.49.7-3.1-1.2-1.4
Total locomotion distance, NPP test1.52.14.7-2.2-0.7-1.1
Locomotion velocity, NPP test1.82.66.2-2.5-1.0-0.9
Pavlov. Cond. lever latency0.40.51.21.10.40.5
Pavlov. Cond. magazine entry latency1.01.32.5-0.9-0.7-1.6
Pavlov. Cond. change in total contacts1.92.02.6-1.4-1.2-1.6
Pavlov. Cond. index score0.70.92.1-0.6-0.4-1.4
Pavlov. Cond. latency score0.40.61.3-0.5-0.3-1.1
Pavlov. Cond. lever contacts0.70.81.3-1.1-0.7-0.8
Pavlov. Cond. magazine entry number0.60.81.40.90.41.2
Pavlov. Cond. intertrial magazine entries1.11.32.0-1.4-0.7-1.1
Pavlov. Cond. lever-magazine prob. diff.0.70.91.9-0.8-0.3-1.4
Pavlov. Cond. response bias0.91.02.0-0.9-0.5-1.4
Bone: apparent density0.10.20.4-0.3-0.1-0.6
Bone surface0.50.81.8-0.7-0.5-1.4
Bone volume0.10.10.4-0.1-0.0-0.6
Bone: connectivity density0.10.10.4-0.1-0.1-0.6
Bone: cortical apparent density0.81.01.9-1.40.0-1.1
Bone: cortical area0.91.32.71.60.8-0.8
Bone: cortical porosity0.70.72.11.50.1-0.0
Bone: cortical porosity1.21.33.61.90.2-0.4
Bone: cortical thickness0.61.02.60.60.4-1.6
Bone: cortical thickness0.50.61.00.3-0.8-1.0
Bone: cortical tissue density0.81.01.8-1.40.0-1.1
Bone: elastic displacement0.10.10.3-0.00.5-0.2
Bone: elastic work1.31.74.22.11.0-0.0
Bone: endosteal estimation0.40.81.61.3-0.00.9
Bone: endosteal perimeter1.12.23.92.01.01.2
Bone: final force1.32.13.61.90.2-1.6
Bone: final moment1.32.23.81.90.2-1.7
Bone: marrow area0.40.81.71.3-0.00.8
Bone: maximum diameter1.62.97.92.80.9-0.3
Bone: maximum force1.52.65.62.4-0.1-1.5
Bone: maximum moment1.62.85.92.40.0-1.6
Bone: minimum diameter0.30.51.21.10.30.5
Bone: periosteal estimation0.61.33.61.90.60.1
Bone: periosteal perimeter1.83.17.22.71.30.5
Bone: post-yield work1.41.93.50.1-1.5-1.9
Bone: stiffness1.11.74.12.0-0.3-0.9
Bone: tissue strength0.20.20.40.30.3-0.6
Bone: trabecular number0.20.30.70.20.90.4
Bone: trabecular spacing0.50.61.00.9-1.0-0.4
Bone: trabecular thickness0.70.81.70.01.30.8
Bone: trabecular tissue density0.50.71.4-0.90.1-1.2
Breakpoint value in progressive ratio session0.50.51.5-0.0-0.3-1.2
Distance traveled before self-admin0.10.10.2-0.1-0.4-0.5
Distance traveled after self-admin2.12.34.4-0.1-1.6-2.1
Delta time in closed arm before/after self-admin0.30.30.90.90.0-0.3
Delta time in open arm before/after self-admin0.40.40.6-0.8-0.50.5
Diff in mean of infusions in LGA sessions0.80.91.5-0.1-1.2-1.1
Extinction: sum of active levers before priming0.50.51.1-0.3-1.1-0.4
Active lever presses in extinction session 60.30.30.30.40.6-0.5
Delta distance traveled before/after self-admin0.80.81.20.3-1.1-1.1
Delta ambulatory time before/after self-admin1.21.32.30.2-1.3-1.5
Time in closed arm before self-admin2.52.94.4-1.3-1.6-2.1
Time in closed arm after self-admin0.60.61.21.1-0.7-0.1
Time in open arm before self-admin0.80.81.60.20.91.3
Time in open arm after self-admin0.40.50.8-0.70.40.9
Sum of active levers in priming session hrs 5-60.20.20.4-0.20.60.2
Time to tail flick, vehicle, before self-admin0.10.10.20.00.4-0.2
Time to tail flick, vehicle, after self-admin0.50.50.9-0.7-0.90.4
Time to tail flick, test, before self-admin0.50.51.1-0.3-0.41.1
Time to tail flick, test, after self-admin0.90.91.6-1.3-1.0-0.3
Delta time to tail flick, vehicle, before/after SA0.20.20.7-0.1-0.8-0.1
Delta time to tail flick, test, before/after SA1.31.22.3-1.5-0.5-1.0
Ambulatory time before self-admin0.30.30.5-0.7-0.6-0.0
Ambulatory time after self-admin3.23.54.8-1.1-2.1-2.2
Total heroin consumption0.40.51.30.1-1.1-0.3
Area under the delay curve1.92.03.1-1.1-1.8-1.3
Delay disc. indifference point, 0s delay0.50.61.41.2-0.30.5
Delay disc. indifference point, 16s delay2.22.23.0-1.7-1.5-1.1
Delay disc. indifference point, 2s delay1.01.12.1-0.2-1.5-1.1
Delay disc. indifference point, 24s delay1.41.41.6-1.1-1.3-1.2
Delay disc. indifference point, 4s delay2.42.54.0-0.6-1.8-2.0
Delay disc. indifference point, 8s delay2.62.63.1-1.5-1.6-1.8
Delay discount exponential model param2.12.23.41.31.81.3
Delay discount hyperbolic model param2.22.33.41.11.81.5
Fecal boli incidents, locomotor time 11.21.32.2-0.6-1.5-1.1
Change in fecal boli incidents, locomotor task0.20.10.40.10.6-0.3
Time >=10cm from walls, locomotor time 10.50.50.70.8-0.5-0.8
Bouts of movement, locomotor time 13.23.58.71.2-0.73.0
Total resting periods, locomotor time 11.71.94.21.0-0.62.1
Rest time, locomotor task time 11.01.01.90.90.6-1.4
Distance moved, locomotor task time 10.60.71.60.50.51.3
Vertical activity count, locomotor time 10.20.20.60.0-0.30.8
Time >=10cm from walls, locomotor time 20.10.10.10.1-0.4-0.3
Bouts of movement, locomotor time 21.11.12.70.80.2-1.6
Total resting periods, locomotor time 21.21.33.60.6-0.1-1.9
Rest time, locomotor task time 21.11.33.4-0.6-0.5-1.8
Distance moved, locomotor task time 21.51.83.51.00.91.9
Vertical activity count, locomotor time 20.40.50.70.8-0.30.8
Weight adjusted by age0.20.20.4-0.3-0.00.6
Seeking ratio, delayed vs. immediate footshock1.01.21.8-0.9-1.01.3
Locomotion in novel chamber1.21.54.1-2.00.50.0
Locomotion in novel chamber post-restriction0.50.60.9-0.8-1.0-0.6
Progressive ratio0.10.10.1-0.3-0.4-0.3
Food seeking constrained by brief footshock0.40.50.90.6-0.31.0
Seeking ratio, punishment vs. effort0.10.10.30.5-0.00.2
Run reversals in cocaine runway, females0.70.71.4-1.2-0.10.8
Run reversals in cocaine runway, males0.20.20.40.2-0.60.3
Latency to leave start box in cocaine runway1.61.72.91.11.71.1
Latency to leave start box in cocaine runway, F0.50.61.00.00.91.0
Latency to leave start box in cocaine runway, M3.23.16.01.72.5-0.3
Cd content in liver0.70.81.21.00.61.1
Co content in liver0.20.30.40.6-0.20.6
Cu content in liver1.61.93.9-2.0-1.2-0.6
Fe content in liver1.01.22.50.6-0.81.6
K content in liver1.01.02.2-0.7-0.6-1.5
Mg content in liver2.22.36.3-0.8-0.1-2.5
Mn content in liver0.10.10.40.00.60.1
Na content in liver1.21.32.1-1.5-1.1-0.6
Rb content in liver0.20.30.8-0.1-0.9-0.0
Se content in liver0.20.30.7-0.90.1-0.0
Sr content in liver0.40.41.1-1.1-0.30.0
Zn content in liver0.60.71.3-1.20.6-0.6