Btbd2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000018788 0.05 0.04 7.0e-07 0.05 0.05 0.05 0.05 2.3e-06 2.9e-06 4.1e-06 3.0e-06
2 Brain gene expression ENSRNOG00000018788 0.03 0.03 8.1e-03 0.02 0.02 0.01 0.02 2.7e-03 4.4e-03 9.1e-02 4.4e-03
3 PL gene expression ENSRNOG00000018788 0.28 0.22 1.8e-03 0.01 0.03 0.03 0.03 4.7e-02 1.6e-03 2.8e-03 3.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail5.718.523.1-4.64.83.3
BMI without tail3.16.59.1-2.03.02.5
Body weight1.14.56.1-2.22.51.5
Epididymis fat weight0.20.40.60.8-0.70.5
Glucose1.21.82.5-1.41.61.0
Heart weight0.20.30.70.8-0.20.4
Left kidney weight0.20.41.0-0.0-0.5-1.0
Right kidney weight1.23.43.91.9-2.0-1.6
Tail length2.06.110.33.2-2.5-1.4
Length with tail1.76.27.02.5-2.6-2.3
Length without tail0.51.02.20.0-0.9-1.5
Liver weight, left2.33.74.0-1.92.01.9
Liver weight, right1.22.03.2-1.81.40.9
Parametrial fat weight0.20.51.11.1-0.4-0.3
Retroperitoneal fat weight0.31.11.3-1.01.01.1
Intraocular pressure0.81.22.70.50.71.7
Extensor digitorum longus weight4.518.223.9-4.14.93.8
Soleus weight7.421.727.6-5.25.33.3
Tibialis anterior weight1.03.54.6-2.12.11.3
Tibia length0.71.92.91.7-1.4-0.8
Number of licking bursts0.50.61.20.20.71.1
Food consumed during 24 hour testing period0.60.71.1-0.71.10.6
Times rat made contact with spout0.60.61.1-0.30.91.0
Mean time between licks in bursts2.94.06.52.6-2.2-0.9
Mean num. licks in bursts0.00.00.1-0.30.0-0.2
Std. dev. time between licks in bursts0.91.11.70.8-1.0-1.3
Water consumed over 24 hours0.40.51.0-1.00.5-0.4
Indifference point 0 sec0.10.10.2-0.50.3-0.2
Indifference point AUC0.60.71.31.1-0.8-0.5
Indifference point function ln k0.30.40.7-0.50.80.5
Indifference point function log k0.30.40.7-0.50.80.5
Delay discounting total patch changes 0 sec0.10.10.1-0.40.3-0.0
Delay discounting total patch changes 12 sec0.50.71.1-0.40.91.1
Delay discounting total patch changes 18 sec0.91.11.61.3-1.2-0.7
Delay discounting total patch changes 24 sec0.10.10.10.3-0.4-0.3
Delay discounting total patch changes 6 sec0.30.40.50.6-0.7-0.6
Delay discounting time to switch 0 sec0.81.23.2-1.80.2-0.5
Delay discounting water rate 0 sec0.71.21.90.61.11.4
Delay discounting water rate 12 sec2.33.45.0-0.82.22.2
Delay discounting water rate 18 sec2.12.75.61.01.32.4
Delay discounting water rate 24 sec2.83.87.50.12.02.7
Delay discounting water rate 6 sec0.60.91.41.10.51.2
Locomotor activity4.26.68.32.1-2.7-2.9
Locomotor testing distance2.33.84.11.8-2.0-2.0
Locomotor testing rearing0.10.10.20.30.30.5
Light reinforcement 15.49.813.93.1-3.7-2.4
Light reinforcement 22.02.74.01.5-2.0-1.3
Reaction time number correct1.62.23.8-0.51.61.9
Reaction time mean minus median0.40.51.01.0-0.5-0.4
Reaction time mean minus median AUC0.30.41.1-0.2-0.3-1.0
Reaction time num false alarms0.50.71.2-0.11.11.0
Reaction time num false alarms AUC0.81.11.7-0.11.31.3
Reaction time trials correct on left1.62.23.8-0.51.61.9
Reaction time trials on left1.52.13.4-0.51.61.9
Reaction time mean0.10.10.4-0.2-0.1-0.6
Reaction time mean AUC0.10.20.4-0.3-0.0-0.6
Median of all reaction times0.20.30.6-0.80.3-0.4
Reaction time omissions0.40.50.60.5-0.8-0.8
Reaction time false alarm rate0.00.10.1-0.10.40.1
Reaction time premature initiation rate0.60.92.01.4-0.80.0
Reaction time premature initiations0.60.91.61.30.01.0
Std. dev. reaction times0.10.20.30.5-0.3-0.5
Reaction time trials completed1.52.13.4-0.51.61.9
Reaction time trials AUC1.72.44.2-0.41.72.1
Social response proportion1.11.22.00.6-1.4-1.1
Social responses6.78.610.52.8-3.2-2.7
Social time0.30.40.8-0.90.60.4
Conditioned locomotion2.32.83.9-1.01.92.0
Cocaine response after cond. corrected7.17.911.3-2.13.42.9
Cocaine response after cond. not corrected7.68.511.8-2.13.43.0
Cocaine response before conditioning0.50.60.70.7-0.8-0.7
Saline control response0.10.10.1-0.10.30.4
Condit. Reinf. active minus inactive responses1.31.63.71.9-1.1-0.2
Condit. Reinf. active-inactive response ratio0.50.51.00.60.31.0
Condit. Reinf. active responses1.31.93.41.8-1.3-0.8
Condit. Reinf. inactive responses0.81.01.21.1-1.0-1.0
Condit. Reinf. lever presses1.31.83.82.0-1.2-0.3
Condit. Reinf. lever reinforcers received0.91.22.81.7-0.9-0.3
Pavlov. Cond. lever latency0.50.71.1-1.10.60.8
Pavlov. Cond. magazine entry latency0.30.30.50.7-0.5-0.6
Pavlov. Cond. change in total contacts0.40.61.21.1-0.6-0.5
Pavlov. Cond. index score0.50.71.21.1-0.6-0.7
Pavlov. Cond. latency score0.60.71.01.0-0.7-0.9
Pavlov. Cond. lever contacts0.40.51.21.1-0.4-0.3
Pavlov. Cond. magazine entry number0.50.60.8-0.90.70.8
Pavlov. Cond. intertrial magazine entries0.60.71.2-0.40.91.1
Pavlov. Cond. lever-magazine prob. diff.0.60.81.11.1-0.7-0.8
Pavlov. Cond. response bias1.01.32.81.7-0.9-0.6
Conditioned reinforcement - actives2.12.13.01.7-1.4-1.2
Conditioned reinforcement - inactives0.80.91.3-0.51.11.1
Conditioned locomotion6.07.210.43.2-2.8-1.9
Intermittent access intake day 1-15 change4.84.77.62.8-2.2-1.3
Intermittent access intake escalation3.93.88.22.9-1.7-0.6
Intermittent access intake escalation 24.74.79.83.1-2.0-0.7
Intermitt. access day 1 inactive lever presses0.30.30.70.90.30.3
Intermitt. access day 15 inactive lever presses0.30.30.60.8-0.5-0.0
Intermitt. access escalation Index0.40.30.6-0.6-0.1-0.8
Intermittent access day 1 total infusions0.00.00.1-0.20.20.0
Intermittent access day 15 total infusions1.21.32.91.7-1.0-0.3
Intermittent access terminal intake (last 3 days)0.80.81.61.3-0.8-0.6
Intermittent access total infusions0.10.10.40.6-0.2-0.0
Intermittent access day 1 locomotion0.20.30.50.7-0.5-0.1
Intermittent access day 15 total locomotion2.72.94.42.1-1.8-0.9
Intermittent access total locomotion0.91.01.41.2-1.0-0.8
Intermittent access standard deviation1.71.83.92.0-1.2-0.5
Cocaine induced anxiety1.51.73.00.6-1.3-1.7
Post-drug Anxiety1.01.11.80.3-1.3-1.3
Baseline Anxiety0.30.30.80.30.00.9
Lifetime Intake0.00.10.10.4-0.1-0.1
Incentive Sensitization - Responses0.20.20.50.70.20.2
Incentive Sensitization - Breakpoint0.20.20.60.80.10.1
Progressive ratio test 1 active lever presses0.30.30.6-0.10.50.8
Progressive ratio test 1 breakpoint0.30.40.6-0.30.60.8
Progressive ratio test 1 inactive lever presses0.00.00.00.1-0.2-0.0
Progressive ratio test 2 active lever presses0.20.20.50.70.10.3
Progressive ratio test 2 breakpoint0.20.20.50.7-0.2-0.1
Progressive ratio test 2 inactive lever presses0.10.10.10.3-0.2-0.4
Total sessions with >9 infusions0.10.10.4-0.00.0-0.6
Short access day 1 total inactive lever presses0.00.10.10.2-0.3-0.1
Short access day 10 total inactive lever presses0.10.10.20.40.20.0
Short access day 1 total infusions0.40.50.80.1-0.8-0.9
Short access day 10 total infusions0.10.10.20.30.20.5
Short access total infusions0.00.00.00.1-0.0-0.2
Short access day 1 locomotion1.21.31.60.9-1.2-1.3
Short access day 10 total locomotion3.03.25.92.4-1.7-1.0
Short access total locomotion0.90.91.21.1-0.9-0.9
Compulsive drug intake0.60.61.2-1.10.8-0.1
One hour access (0.3 mA shock)0.20.20.2-0.40.50.5
One hour access (shock baseline)0.20.20.40.40.20.7
Number of responses in last shaping day0.10.10.20.5-0.2-0.3
Context. condit. distance diff. score0.40.40.6-0.60.80.6
Locomotion velocity, session 11.31.42.40.4-1.3-1.5
Locomotion distance, session 11.52.04.0-0.2-1.4-2.0
Locomotion velocity, session 25.36.29.11.5-3.0-2.7
Locomotion distance, session 23.65.27.90.9-2.6-2.8
Locomotion velocity, session 34.35.07.22.7-2.5-1.2
Locomotion distance, session 30.10.10.10.00.30.4
Stereotopy head waving bouts, day 34.55.47.52.2-2.7-1.9
Stereotopy head waving duration, day 34.85.98.12.5-2.8-1.8
Locomotion velocity, session 70.40.50.70.8-0.4-0.8
Locomotion distance, session 70.50.61.0-0.11.00.9
Stereotopy head waving bouts, day 70.40.51.0-0.3-0.6-1.0
Stereotopy head waving duration, day 70.91.12.20.1-1.0-1.5
Locomotion velocity, session 81.92.24.10.3-1.6-2.0
Locomotion distance, session 80.30.50.70.2-0.8-0.8
Degree of sensitization distance0.30.30.4-0.60.60.2
Degree of sensitization stereotypy1.11.22.7-1.61.00.0
Condit. Reinf. active minus inactive responses3.23.64.92.1-2.2-1.2
Condit. Reinf. active-inactive response ratio1.21.32.71.6-1.1-0.2
Condit. Reinf. active responses4.04.97.11.9-2.7-2.0
Condit. Reinf. inactive responses2.02.43.40.6-1.8-1.9
Incentive salience index mean2.42.94.21.4-2.1-1.6
Condit. Reinf. lever presses1.21.63.5-0.4-1.1-1.9
Time in familiar zone, hab. session 11.31.22.41.6-1.1-0.2
Time in novel zone, hab. session 10.70.71.4-1.20.6-0.5
Total zone transitions, hab. session 12.02.84.20.7-1.9-2.0
Total locomotion distance, hab. session 13.04.37.50.6-2.2-2.7
Locomotion velocity, hab. session 13.24.56.81.0-2.4-2.6
Time in familiar zone, hab. session 23.73.97.62.8-1.9-0.4
Time in novel zone, hab. session 22.82.95.7-2.41.70.2
Total zone transitions, hab. session 21.11.52.8-0.8-1.0-1.7
Total locomotion distance, hab. session 22.12.84.10.7-2.0-1.9
Locomotion velocity, hab. session 22.63.55.10.6-2.2-2.3
Novel to familiar place preference ratio2.52.65.5-2.31.5-0.2
Novelty place preference1.51.63.4-1.91.1-0.4
Time in novel zone, NPP test1.71.83.9-2.01.3-0.2
Total zone transitions, NPP test0.60.81.3-0.3-1.0-1.1
Total locomotion distance, NPP test0.60.81.7-0.5-0.8-1.3
Locomotion velocity, NPP test0.81.12.1-0.2-1.1-1.4
Pavlov. Cond. lever latency0.40.51.20.40.51.1
Pavlov. Cond. magazine entry latency2.12.84.12.0-1.9-0.8
Pavlov. Cond. change in total contacts0.10.10.20.2-0.4-0.3
Pavlov. Cond. index score0.60.81.20.5-1.1-1.0
Pavlov. Cond. latency score0.91.11.80.4-1.2-1.3
Pavlov. Cond. lever contacts0.80.92.0-0.2-0.8-1.4
Pavlov. Cond. magazine entry number0.60.71.1-0.91.10.4
Pavlov. Cond. intertrial magazine entries0.20.30.50.60.00.7
Pavlov. Cond. lever-magazine prob. diff.0.91.21.70.8-1.3-1.1
Pavlov. Cond. response bias0.91.11.71.1-1.3-0.7
Bone: apparent density1.22.04.6-0.6-1.0-2.1
Bone surface2.85.011.1-0.3-2.0-3.3
Bone volume3.05.111.7-0.3-1.9-3.4
Bone: connectivity density0.60.91.6-1.0-0.3-1.3
Bone: cortical apparent density0.60.71.0-1.00.90.6
Bone: cortical area0.40.61.3-1.10.5-0.7
Bone: cortical porosity1.01.11.70.6-1.0-1.3
Bone: cortical porosity0.70.81.9-0.1-0.7-1.4
Bone: cortical thickness0.61.12.1-1.51.00.1
Bone: cortical thickness0.30.40.70.30.60.8
Bone: cortical tissue density0.40.50.6-0.80.70.6
Bone: elastic displacement0.30.30.40.5-0.6-0.6
Bone: elastic work0.20.20.4-0.60.5-0.3
Bone: endosteal estimation0.10.30.6-0.80.4-0.0
Bone: endosteal perimeter0.40.81.50.4-0.9-1.2
Bone: final force0.81.32.6-1.61.2-0.2
Bone: final moment0.61.02.1-1.41.0-0.2
Bone: marrow area0.10.30.7-0.80.50.0
Bone: maximum diameter1.22.13.50.8-1.5-1.9
Bone: maximum force0.91.52.6-1.61.40.2
Bone: maximum moment0.71.22.1-1.51.20.1
Bone: minimum diameter0.10.20.5-0.3-0.1-0.7
Bone: periosteal estimation0.30.61.1-1.10.3-0.7
Bone: periosteal perimeter0.40.71.9-0.0-0.5-1.4
Bone: post-yield work0.60.81.1-0.81.10.7
Bone: stiffness2.23.55.5-2.32.10.8
Bone: tissue strength1.01.01.8-1.41.00.4
Bone: trabecular number1.42.23.70.6-1.6-1.9
Bone: trabecular spacing2.53.36.5-0.11.82.5
Bone: trabecular thickness3.34.09.6-0.7-1.4-3.1
Bone: trabecular tissue density1.62.22.5-1.41.61.5
Breakpoint value in progressive ratio session3.74.17.12.7-2.1-0.8
Distance traveled before self-admin0.20.20.4-0.60.5-0.3
Distance traveled after self-admin0.80.81.10.8-0.9-1.1
Delta time in closed arm before/after self-admin3.02.95.4-0.31.82.3
Delta time in open arm before/after self-admin0.70.71.5-1.20.80.2
Diff in mean of infusions in LGA sessions1.31.52.31.3-1.5-0.6
Extinction: sum of active levers before priming0.90.92.31.5-0.60.2
Active lever presses in extinction session 62.72.62.81.7-1.6-1.5
Delta distance traveled before/after self-admin1.21.31.81.2-1.4-0.9
Delta ambulatory time before/after self-admin1.41.62.31.2-1.5-1.0
Time in closed arm before self-admin0.60.71.4-1.20.1-0.7
Time in closed arm after self-admin0.00.00.10.1-0.00.3
Time in open arm before self-admin0.60.61.31.2-0.6-0.4
Time in open arm after self-admin0.60.61.0-0.81.00.5
Sum of active levers in priming session hrs 5-60.00.00.00.1-0.1-0.1
Time to tail flick, vehicle, before self-admin1.11.11.80.4-1.1-1.3
Time to tail flick, vehicle, after self-admin0.50.61.40.50.21.2
Time to tail flick, test, before self-admin0.70.71.40.2-0.8-1.2
Time to tail flick, test, after self-admin0.30.30.60.3-0.8-0.6
Delta time to tail flick, vehicle, before/after SA1.91.83.8-0.31.32.0
Delta time to tail flick, test, before/after SA0.30.20.50.4-0.00.7
Ambulatory time before self-admin0.20.20.3-0.50.5-0.3
Ambulatory time after self-admin0.50.50.70.6-0.7-0.9
Total heroin consumption1.61.92.41.6-1.6-1.0
Area under the delay curve1.71.92.6-1.61.60.6
Delay disc. indifference point, 0s delay4.04.310.1-3.21.7-0.2
Delay disc. indifference point, 16s delay0.10.10.1-0.40.30.2
Delay disc. indifference point, 2s delay3.84.27.6-2.82.10.7
Delay disc. indifference point, 24s delay0.70.71.2-0.71.10.6
Delay disc. indifference point, 4s delay0.70.71.5-1.20.80.1
Delay disc. indifference point, 8s delay1.51.52.6-1.01.61.0
Delay discount exponential model param1.71.82.51.5-1.6-0.7
Delay discount hyperbolic model param2.32.43.41.8-1.8-0.7
Fecal boli incidents, locomotor time 11.61.82.5-1.21.61.2
Change in fecal boli incidents, locomotor task0.60.51.40.3-0.4-1.2
Time >=10cm from walls, locomotor time 10.60.61.2-0.70.4-1.1
Bouts of movement, locomotor time 10.10.10.20.5-0.2-0.0
Total resting periods, locomotor time 10.10.20.30.5-0.4-0.3
Rest time, locomotor task time 10.30.30.50.4-0.7-0.5
Distance moved, locomotor task time 10.50.50.7-0.80.3-0.9
Vertical activity count, locomotor time 10.30.30.8-0.20.90.4
Time >=10cm from walls, locomotor time 21.31.42.8-0.91.70.7
Bouts of movement, locomotor time 21.01.11.70.4-1.3-1.2
Total resting periods, locomotor time 21.01.11.60.3-1.3-1.3
Rest time, locomotor task time 20.80.91.20.6-1.1-1.1
Distance moved, locomotor task time 20.81.01.2-0.81.11.0
Vertical activity count, locomotor time 21.41.62.2-0.61.51.5
Weight adjusted by age1.01.11.7-0.21.21.3
Seeking ratio, delayed vs. immediate footshock4.24.85.82.2-2.4-1.9
Locomotion in novel chamber0.20.20.60.8-0.30.0
Locomotion in novel chamber post-restriction0.40.50.91.0-0.7-0.2
Progressive ratio0.30.40.8-0.40.40.9
Food seeking constrained by brief footshock0.20.30.80.3-0.9-0.2
Seeking ratio, punishment vs. effort0.40.40.60.3-0.8-0.8
Run reversals in cocaine runway, females0.40.40.50.5-0.7-0.6
Run reversals in cocaine runway, males1.31.32.21.0-1.5-0.9
Latency to leave start box in cocaine runway2.12.34.30.8-1.4-2.1
Latency to leave start box in cocaine runway, F1.51.74.5-0.2-0.7-2.1
Latency to leave start box in cocaine runway, M1.71.63.71.9-1.0-0.0
Cd content in liver0.10.10.3-0.50.3-0.1
Co content in liver0.40.40.70.9-0.7-0.3
Cu content in liver0.40.41.0-0.6-0.2-1.0
Fe content in liver0.10.10.20.30.10.5
K content in liver0.60.61.4-0.3-0.6-1.2
Mg content in liver0.70.71.6-0.4-0.6-1.3
Mn content in liver3.13.67.00.4-1.9-2.7
Na content in liver0.60.71.6-1.30.3-0.5
Rb content in liver0.40.60.8-0.9-0.0-0.9
Se content in liver0.20.20.30.4-0.6-0.4
Sr content in liver0.40.40.90.30.40.9
Zn content in liver1.31.43.21.8-0.50.8