Slc22a6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000018215 0.04 0.03 2.0e-03 0.04 0.03 0.03 0.03 2.6e-04 4.4e-04 9.9e-04 4.5e-04
2 Brain mRNA stability ENSRNOG00000018215 0.12 0.06 2.7e-09 0.1 0.1 0.1 0.1 8.4e-10 1.0e-09 2.3e-09 8.9e-10
3 PL mRNA stability ENSRNOG00000018215 0.05 0.04 3.0e-04 0.05 0.04 0.04 0.04 1.9e-04 7.8e-04 4.6e-04 3.9e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail2.06.47.1-2.42.52.7
BMI without tail1.22.43.0-1.51.51.7
Body weight3.615.417.2-3.83.84.2
Epididymis fat weight0.30.70.90.9-0.9-0.4
Glucose2.74.24.32.1-2.0-2.0
Heart weight0.30.50.60.6-0.7-0.8
Left kidney weight0.00.00.00.1-0.10.1
Right kidney weight0.00.00.00.0-0.00.1
Tail length1.23.54.2-1.81.82.1
Length with tail2.48.79.4-2.92.93.1
Length without tail1.83.94.0-1.92.02.0
Liver weight, left0.20.30.30.6-0.5-0.5
Liver weight, right0.00.10.1-0.20.30.3
Parametrial fat weight1.63.23.21.8-1.8-1.8
Retroperitoneal fat weight2.17.07.62.7-2.8-2.5
Intraocular pressure0.10.20.30.4-0.5-0.4
Extensor digitorum longus weight6.425.527.1-5.05.05.2
Soleus weight2.46.96.92.6-2.6-2.6
Tibialis anterior weight8.629.530.9-5.45.45.6
Tibia length0.41.01.2-0.90.91.1
Number of licking bursts0.00.00.00.1-0.0-0.0
Food consumed during 24 hour testing period0.20.20.30.5-0.4-0.5
Times rat made contact with spout0.40.50.6-0.70.70.7
Mean time between licks in bursts2.33.23.3-1.81.81.7
Mean num. licks in bursts0.00.00.0-0.20.10.1
Std. dev. time between licks in bursts0.20.20.3-0.50.50.3
Water consumed over 24 hours0.70.80.9-0.90.90.9
Indifference point 0 sec0.50.90.9-0.90.91.0
Indifference point AUC0.80.90.9-1.01.01.0
Indifference point function ln k0.81.21.41.0-1.0-1.2
Indifference point function log k0.81.21.41.0-1.0-1.2
Delay discounting total patch changes 0 sec0.71.21.3-1.11.11.1
Delay discounting total patch changes 12 sec4.45.85.9-2.42.42.4
Delay discounting total patch changes 18 sec0.20.20.3-0.50.50.4
Delay discounting total patch changes 24 sec6.88.68.9-3.02.92.9
Delay discounting total patch changes 6 sec1.21.92.0-1.41.41.3
Delay discounting time to switch 0 sec0.00.10.1-0.30.20.2
Delay discounting water rate 0 sec0.10.10.20.3-0.3-0.5
Delay discounting water rate 12 sec0.20.40.50.7-0.6-0.5
Delay discounting water rate 18 sec0.00.00.0-0.10.10.1
Delay discounting water rate 24 sec0.40.60.70.7-0.7-0.9
Delay discounting water rate 6 sec0.10.20.30.5-0.4-0.5
Locomotor activity0.00.00.00.2-0.2-0.2
Locomotor testing distance0.00.00.00.1-0.1-0.1
Locomotor testing rearing0.20.30.30.5-0.6-0.5
Light reinforcement 10.00.10.10.2-0.3-0.2
Light reinforcement 21.11.41.51.2-1.2-1.1
Reaction time number correct1.11.61.9-1.21.31.4
Reaction time mean minus median0.00.10.10.2-0.2-0.3
Reaction time mean minus median AUC0.00.00.10.2-0.2-0.3
Reaction time num false alarms0.00.00.1-0.20.20.1
Reaction time num false alarms AUC0.40.50.6-0.80.80.7
Reaction time trials correct on left1.11.61.9-1.21.31.4
Reaction time trials on left1.21.71.9-1.21.31.4
Reaction time mean0.30.50.70.6-0.6-0.8
Reaction time mean AUC0.50.60.80.7-0.8-0.9
Median of all reaction times0.10.10.20.2-0.3-0.4
Reaction time omissions0.00.00.1-0.30.2-0.1
Reaction time false alarm rate0.00.00.00.0-0.1-0.2
Reaction time premature initiation rate5.97.98.7-2.82.72.9
Reaction time premature initiations7.911.212.3-3.33.23.5
Std. dev. reaction times0.50.70.90.8-0.8-1.0
Reaction time trials completed1.21.71.9-1.21.31.4
Reaction time trials AUC1.01.51.7-1.11.21.3
Social response proportion0.20.20.3-0.40.40.6
Social responses0.10.20.2-0.40.40.5
Social time0.00.00.1-0.00.10.3
Conditioned locomotion0.60.70.8-0.90.90.7
Cocaine response after cond. corrected0.10.10.20.3-0.3-0.5
Cocaine response after cond. not corrected0.10.10.20.3-0.4-0.4
Cocaine response before conditioning0.00.00.1-0.20.10.3
Saline control response3.03.94.4-1.91.92.1
Condit. Reinf. active minus inactive responses0.91.11.11.1-1.1-1.0
Condit. Reinf. active-inactive response ratio2.52.62.71.6-1.6-1.6
Condit. Reinf. active responses0.00.00.00.2-0.10.0
Condit. Reinf. inactive responses0.80.91.1-0.90.91.1
Condit. Reinf. lever presses0.40.60.7-0.70.80.8
Condit. Reinf. lever reinforcers received0.00.00.0-0.10.10.2
Pavlov. Cond. lever latency0.20.30.40.5-0.6-0.6
Pavlov. Cond. magazine entry latency3.54.04.1-2.02.02.0
Pavlov. Cond. change in total contacts0.40.60.7-0.70.80.8
Pavlov. Cond. index score1.41.91.9-1.41.41.4
Pavlov. Cond. latency score1.21.51.6-1.21.31.2
Pavlov. Cond. lever contacts0.20.20.3-0.50.50.5
Pavlov. Cond. magazine entry number5.26.56.52.5-2.5-2.5
Pavlov. Cond. intertrial magazine entries1.92.52.61.6-1.6-1.5
Pavlov. Cond. lever-magazine prob. diff.1.82.32.4-1.51.51.5
Pavlov. Cond. response bias1.11.51.5-1.21.21.2
Conditioned reinforcement - actives3.23.23.41.7-1.8-1.8
Conditioned reinforcement - inactives1.31.51.51.2-1.2-1.2
Conditioned locomotion2.22.73.01.6-1.6-1.7
Intermittent access intake day 1-15 change2.02.02.11.4-1.4-1.4
Intermittent access intake escalation1.31.31.31.1-1.1-1.1
Intermittent access intake escalation 20.20.20.20.4-0.4-0.5
Intermitt. access day 1 inactive lever presses2.22.42.81.7-1.5-1.5
Intermitt. access day 15 inactive lever presses0.00.00.00.2-0.20.0
Intermitt. access escalation Index0.00.00.00.0-0.0-0.1
Intermittent access day 1 total infusions0.70.80.90.8-0.9-0.9
Intermittent access day 15 total infusions4.14.64.72.1-2.2-2.2
Intermittent access terminal intake (last 3 days)1.11.21.31.0-1.1-1.1
Intermittent access total infusions1.21.41.51.1-1.2-1.2
Intermittent access day 1 locomotion0.00.00.10.1-0.1-0.3
Intermittent access day 15 total locomotion0.30.30.30.5-0.6-0.6
Intermittent access total locomotion0.20.30.30.4-0.5-0.6
Intermittent access standard deviation1.81.92.11.3-1.4-1.4
Cocaine induced anxiety0.10.10.1-0.40.30.3
Post-drug Anxiety0.30.30.3-0.50.60.6
Baseline Anxiety1.21.31.4-1.11.21.2
Lifetime Intake1.01.11.21.0-1.1-1.1
Incentive Sensitization - Responses0.00.00.0-0.1-0.0-0.0
Incentive Sensitization - Breakpoint0.00.00.00.0-0.1-0.1
Progressive ratio test 1 active lever presses2.52.62.81.5-1.6-1.7
Progressive ratio test 1 breakpoint2.82.93.21.6-1.7-1.8
Progressive ratio test 1 inactive lever presses0.10.10.1-0.30.30.3
Progressive ratio test 2 active lever presses2.42.52.61.5-1.6-1.6
Progressive ratio test 2 breakpoint3.64.04.21.9-2.0-2.0
Progressive ratio test 2 inactive lever presses1.11.31.51.1-1.2-1.1
Total sessions with >9 infusions1.21.31.51.1-1.2-1.2
Short access day 1 total inactive lever presses0.60.60.70.8-0.8-0.8
Short access day 10 total inactive lever presses1.61.81.91.4-1.3-1.3
Short access day 1 total infusions0.60.70.80.7-0.9-0.8
Short access day 10 total infusions0.10.20.20.3-0.4-0.5
Short access total infusions0.20.30.30.4-0.5-0.6
Short access day 1 locomotion0.10.10.2-0.40.40.3
Short access day 10 total locomotion0.00.00.0-0.10.2-0.0
Short access total locomotion0.20.20.3-0.50.60.3
Compulsive drug intake2.32.32.5-1.51.51.6
One hour access (0.3 mA shock)4.65.35.42.3-2.3-2.3
One hour access (shock baseline)7.48.68.92.9-2.9-3.0
Number of responses in last shaping day0.00.00.1-0.20.20.1
Context. condit. distance diff. score0.10.10.20.3-0.3-0.4
Locomotion velocity, session 10.20.20.3-0.50.60.4
Locomotion distance, session 10.81.11.1-1.01.01.0
Locomotion velocity, session 22.32.72.9-1.61.61.7
Locomotion distance, session 20.30.50.5-0.70.70.7
Locomotion velocity, session 30.40.50.6-0.70.70.8
Locomotion distance, session 30.30.30.4-0.40.50.6
Stereotopy head waving bouts, day 30.10.10.20.4-0.3-0.5
Stereotopy head waving duration, day 30.10.10.20.3-0.3-0.4
Locomotion velocity, session 70.10.10.10.4-0.3-0.4
Locomotion distance, session 70.00.00.00.00.1-0.0
Stereotopy head waving bouts, day 70.00.00.00.2-0.2-0.2
Stereotopy head waving duration, day 71.21.51.6-1.21.21.3
Locomotion velocity, session 80.00.00.1-0.30.20.2
Locomotion distance, session 80.10.20.20.4-0.4-0.4
Degree of sensitization distance0.10.10.10.2-0.1-0.3
Degree of sensitization stereotypy0.20.20.3-0.50.40.5
Condit. Reinf. active minus inactive responses1.01.11.3-1.01.11.0
Condit. Reinf. active-inactive response ratio0.60.60.7-0.80.90.7
Condit. Reinf. active responses0.40.50.6-0.70.80.7
Condit. Reinf. inactive responses0.20.20.20.5-0.4-0.4
Incentive salience index mean1.31.51.6-1.21.31.2
Condit. Reinf. lever presses0.60.91.0-0.90.91.0
Time in familiar zone, hab. session 10.20.20.3-0.40.50.4
Time in novel zone, hab. session 10.80.80.90.9-1.0-0.9
Total zone transitions, hab. session 10.20.30.4-0.50.60.6
Total locomotion distance, hab. session 10.20.20.30.5-0.4-0.6
Locomotion velocity, hab. session 10.00.00.0-0.00.1-0.0
Time in familiar zone, hab. session 20.00.00.0-0.10.10.1
Time in novel zone, hab. session 20.20.20.3-0.50.50.4
Total zone transitions, hab. session 22.12.72.9-1.61.61.7
Total locomotion distance, hab. session 20.20.20.3-0.40.50.5
Locomotion velocity, hab. session 20.00.00.0-0.10.20.2
Novel to familiar place preference ratio1.11.11.2-1.01.11.1
Novelty place preference0.50.50.6-0.70.70.8
Time in novel zone, NPP test0.70.70.7-0.80.80.9
Total zone transitions, NPP test1.42.02.0-1.41.41.4
Total locomotion distance, NPP test0.10.10.2-0.40.40.3
Locomotion velocity, NPP test0.00.00.1-0.20.20.1
Pavlov. Cond. lever latency0.81.01.11.0-1.0-1.0
Pavlov. Cond. magazine entry latency0.40.50.6-0.70.70.8
Pavlov. Cond. change in total contacts0.00.00.00.1-0.1-0.1
Pavlov. Cond. index score0.20.30.3-0.50.50.6
Pavlov. Cond. latency score0.30.30.4-0.50.50.6
Pavlov. Cond. lever contacts0.10.20.2-0.40.40.5
Pavlov. Cond. magazine entry number0.10.20.20.4-0.4-0.4
Pavlov. Cond. intertrial magazine entries0.10.10.10.3-0.3-0.3
Pavlov. Cond. lever-magazine prob. diff.0.20.30.3-0.50.50.6
Pavlov. Cond. response bias0.20.30.3-0.50.50.6
Bone: apparent density0.20.30.3-0.60.60.4
Bone surface0.91.61.8-1.31.31.2
Bone volume0.20.40.5-0.60.70.5
Bone: connectivity density1.52.32.5-1.61.61.4
Bone: cortical apparent density0.40.60.6-0.80.80.7
Bone: cortical area0.40.60.7-0.70.70.8
Bone: cortical porosity0.10.10.10.3-0.3-0.4
Bone: cortical porosity0.00.00.0-0.10.10.0
Bone: cortical thickness3.45.66.1-2.32.32.5
Bone: cortical thickness1.01.21.3-1.11.11.1
Bone: cortical tissue density0.50.70.8-0.90.90.7
Bone: elastic displacement0.10.10.10.3-0.3-0.4
Bone: elastic work1.51.92.0-1.41.41.3
Bone: endosteal estimation1.53.23.31.8-1.8-1.8
Bone: endosteal perimeter2.96.16.22.5-2.5-2.4
Bone: final force1.62.62.7-1.61.61.6
Bone: final moment1.52.52.6-1.51.61.6
Bone: marrow area1.63.53.61.9-1.9-1.9
Bone: maximum diameter0.00.00.00.2-0.2-0.1
Bone: maximum force1.62.83.0-1.61.71.7
Bone: maximum moment1.62.72.9-1.61.61.7
Bone: minimum diameter0.91.61.71.3-1.3-1.2
Bone: periosteal estimation0.20.40.40.7-0.6-0.6
Bone: periosteal perimeter0.20.30.40.6-0.6-0.5
Bone: post-yield work0.81.11.41.0-1.0-1.2
Bone: stiffness0.20.40.4-0.60.60.7
Bone: tissue strength0.10.10.20.4-0.4-0.1
Bone: trabecular number0.50.70.8-0.90.90.8
Bone: trabecular spacing0.00.00.10.2-0.3-0.1
Bone: trabecular thickness0.60.71.00.7-0.8-1.0
Bone: trabecular tissue density4.25.96.12.4-2.4-2.5
Breakpoint value in progressive ratio session1.21.41.5-1.21.11.2
Distance traveled before self-admin1.41.51.6-1.21.31.2
Distance traveled after self-admin0.20.20.3-0.30.40.5
Delta time in closed arm before/after self-admin3.33.23.3-1.81.81.8
Delta time in open arm before/after self-admin0.50.50.6-0.70.70.7
Diff in mean of infusions in LGA sessions1.61.81.9-1.31.41.4
Extinction: sum of active levers before priming3.63.63.8-1.81.91.9
Active lever presses in extinction session 61.61.51.6-1.21.31.2
Delta distance traveled before/after self-admin0.20.20.20.4-0.5-0.3
Delta ambulatory time before/after self-admin0.40.40.40.6-0.7-0.6
Time in closed arm before self-admin0.20.20.30.4-0.5-0.4
Time in closed arm after self-admin0.20.20.30.4-0.6-0.4
Time in open arm before self-admin0.00.00.00.1-0.1-0.2
Time in open arm after self-admin0.10.10.1-0.20.30.2
Sum of active levers in priming session hrs 5-60.10.10.1-0.20.30.3
Time to tail flick, vehicle, before self-admin0.20.20.2-0.50.50.5
Time to tail flick, vehicle, after self-admin0.80.90.9-0.90.90.9
Time to tail flick, test, before self-admin0.70.70.7-0.80.80.8
Time to tail flick, test, after self-admin0.10.10.10.3-0.3-0.3
Delta time to tail flick, vehicle, before/after SA0.10.10.1-0.30.40.3
Delta time to tail flick, test, before/after SA0.30.20.20.5-0.5-0.5
Ambulatory time before self-admin0.80.91.0-0.90.91.0
Ambulatory time after self-admin0.00.00.1-0.10.20.3
Total heroin consumption3.23.84.0-1.91.92.0
Area under the delay curve0.10.10.1-0.30.30.2
Delay disc. indifference point, 0s delay0.00.00.00.0-0.0-0.1
Delay disc. indifference point, 16s delay0.00.00.0-0.20.20.1
Delay disc. indifference point, 2s delay0.10.20.20.4-0.4-0.4
Delay disc. indifference point, 24s delay0.40.40.4-0.60.60.7
Delay disc. indifference point, 4s delay0.90.91.0-1.01.00.9
Delay disc. indifference point, 8s delay0.00.00.10.2-0.2-0.2
Delay discount exponential model param0.10.10.10.3-0.2-0.2
Delay discount hyperbolic model param0.10.10.10.3-0.3-0.3
Fecal boli incidents, locomotor time 11.01.11.21.1-1.0-1.1
Change in fecal boli incidents, locomotor task0.00.00.00.1-0.1-0.1
Time >=10cm from walls, locomotor time 13.73.84.01.9-1.9-2.0
Bouts of movement, locomotor time 10.00.00.0-0.1-0.00.0
Total resting periods, locomotor time 10.00.00.0-0.0-0.0-0.0
Rest time, locomotor task time 11.51.71.71.3-1.3-1.3
Distance moved, locomotor task time 10.30.40.4-0.60.70.6
Vertical activity count, locomotor time 10.40.40.50.7-0.6-0.7
Time >=10cm from walls, locomotor time 20.50.60.60.7-0.7-0.8
Bouts of movement, locomotor time 21.11.21.3-1.11.11.1
Total resting periods, locomotor time 20.50.50.5-0.70.70.7
Rest time, locomotor task time 23.23.73.81.9-1.9-1.9
Distance moved, locomotor task time 20.40.50.5-0.70.70.7
Vertical activity count, locomotor time 20.10.10.1-0.30.20.3
Weight adjusted by age1.31.51.5-1.21.21.2
Seeking ratio, delayed vs. immediate footshock0.00.00.0-0.20.10.2
Locomotion in novel chamber2.93.63.81.9-1.9-1.9
Locomotion in novel chamber post-restriction3.03.53.71.9-1.8-1.9
Progressive ratio0.00.00.00.1-0.20.1
Food seeking constrained by brief footshock0.00.00.00.0-0.00.0
Seeking ratio, punishment vs. effort0.00.00.1-0.20.30.1
Run reversals in cocaine runway, females1.91.81.9-1.41.31.4
Run reversals in cocaine runway, males0.50.50.60.6-0.6-0.7
Latency to leave start box in cocaine runway0.20.30.30.5-0.6-0.4
Latency to leave start box in cocaine runway, F0.00.00.0-0.1-0.00.1
Latency to leave start box in cocaine runway, M2.62.52.71.6-1.6-1.5
Cd content in liver1.61.72.31.2-1.2-1.5
Co content in liver0.50.60.80.7-0.7-0.9
Cu content in liver0.50.60.7-0.80.80.8
Fe content in liver0.10.10.10.2-0.2-0.3
K content in liver0.60.61.0-0.70.71.0
Mg content in liver0.20.20.4-0.40.50.6
Mn content in liver1.51.72.1-1.21.21.5
Na content in liver0.20.20.3-0.40.40.5
Rb content in liver0.81.01.11.1-1.0-0.9
Se content in liver0.00.00.00.2-0.2-0.1
Sr content in liver4.84.44.4-2.12.12.1
Zn content in liver3.03.33.6-1.81.91.8