Tpbgl

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000017922 0.09 0.05 3.3e-10 0.08 0.08 0.08 0.08 1.3e-09 4.3e-09 5.8e-09 3.0e-09
2 Brain gene expression ENSRNOG00000017922 0.46 0.18 0.0e+00 0.23 0.24 0.24 0.23 8.9e-21 4.6e-22 1.4e-22 9.5e-21
3 PL gene expression ENSRNOG00000017922 0.06 0.04 8.4e-05 0.03 0.06 0.05 0.01 1.2e-03 4.8e-05 5.9e-05 4.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.10.20.50.0-0.7-0.4
BMI without tail2.24.76.3-1.3-2.5-2.5
Body weight1.35.79.2-1.1-3.0-2.6
Epididymis fat weight0.71.63.10.1-1.8-1.3
Glucose0.10.10.10.10.40.4
Heart weight0.40.50.9-0.9-0.4-0.7
Left kidney weight2.15.97.2-2.0-2.6-2.7
Right kidney weight1.33.74.6-1.5-2.1-2.1
Tail length5.717.121.4-3.1-4.5-4.6
Length with tail2.59.313.2-1.8-3.6-3.4
Length without tail0.30.60.91.00.30.8
Liver weight, left0.50.71.30.4-1.2-0.9
Liver weight, right0.91.52.60.9-1.6-1.0
Parametrial fat weight0.51.01.90.8-1.4-0.8
Retroperitoneal fat weight1.54.99.11.7-3.0-1.7
Intraocular pressure0.20.20.4-0.30.70.5
Extensor digitorum longus weight0.31.42.5-0.1-1.6-1.3
Soleus weight1.13.25.5-0.4-2.3-2.0
Tibialis anterior weight0.41.31.8-0.8-1.4-1.2
Tibia length0.41.13.2-1.80.4-0.2
Number of licking bursts2.12.56.12.50.31.2
Food consumed during 24 hour testing period1.31.64.0-2.00.3-0.8
Times rat made contact with spout0.20.30.40.2-0.6-0.6
Mean time between licks in bursts7.810.912.3-3.4-3.0-3.5
Mean num. licks in bursts2.12.55.5-2.3-0.5-1.3
Std. dev. time between licks in bursts3.74.45.3-1.7-2.2-2.3
Water consumed over 24 hours1.01.21.31.11.11.0
Indifference point 0 sec3.75.99.8-3.1-1.7-2.3
Indifference point AUC0.70.91.3-0.5-1.2-1.0
Indifference point function ln k0.50.61.1-1.00.90.3
Indifference point function log k0.50.61.1-1.00.90.3
Delay discounting total patch changes 0 sec3.04.97.7-2.8-1.6-2.1
Delay discounting total patch changes 12 sec2.73.64.1-1.8-1.9-2.0
Delay discounting total patch changes 18 sec2.53.34.0-2.0-1.5-1.9
Delay discounting total patch changes 24 sec1.21.41.8-1.0-1.4-1.3
Delay discounting total patch changes 6 sec0.50.81.5-1.2-0.6-0.7
Delay discounting time to switch 0 sec3.55.47.92.81.72.3
Delay discounting water rate 0 sec2.13.36.1-2.5-1.1-1.6
Delay discounting water rate 12 sec0.81.23.2-1.8-0.1-0.7
Delay discounting water rate 18 sec0.60.91.4-1.2-0.6-0.9
Delay discounting water rate 24 sec0.40.60.8-0.90.90.4
Delay discounting water rate 6 sec0.20.30.7-0.80.3-0.0
Locomotor activity0.30.51.2-1.10.1-0.7
Locomotor testing distance1.72.84.7-2.2-0.9-1.7
Locomotor testing rearing1.72.73.4-1.6-1.5-1.8
Light reinforcement 10.81.53.21.80.60.9
Light reinforcement 20.40.50.80.50.90.7
Reaction time number correct0.91.32.60.11.61.1
Reaction time mean minus median1.11.41.7-1.0-1.3-1.3
Reaction time mean minus median AUC0.70.91.3-1.2-0.6-0.9
Reaction time num false alarms0.50.61.81.30.00.4
Reaction time num false alarms AUC0.30.51.11.10.30.5
Reaction time trials correct on left0.91.32.60.11.61.1
Reaction time trials on left0.91.32.60.11.61.1
Reaction time mean0.30.40.60.8-0.7-0.1
Reaction time mean AUC0.40.51.31.1-0.20.3
Median of all reaction times0.50.61.61.3-0.20.4
Reaction time omissions0.20.20.30.6-0.6-0.2
Reaction time false alarm rate0.30.51.21.1-0.50.1
Reaction time premature initiation rate4.66.17.6-1.9-2.8-2.7
Reaction time premature initiations2.02.83.2-1.7-1.6-1.8
Std. dev. reaction times1.31.83.0-0.6-1.7-1.4
Reaction time trials completed0.91.32.60.11.61.1
Reaction time trials AUC0.60.91.90.01.40.9
Social response proportion0.10.10.30.5-0.20.0
Social responses0.40.50.90.2-0.9-0.7
Social time3.04.04.92.21.72.0
Conditioned locomotion0.20.30.40.30.60.6
Cocaine response after cond. corrected0.50.51.41.2-0.30.4
Cocaine response after cond. not corrected0.20.20.50.7-0.10.4
Cocaine response before conditioning0.40.51.1-1.00.70.0
Saline control response2.02.73.3-1.8-1.4-1.7
Condit. Reinf. active minus inactive responses6.98.611.9-3.4-2.4-2.9
Condit. Reinf. active-inactive response ratio1.11.22.2-1.5-0.7-0.9
Condit. Reinf. active responses10.114.017.5-4.2-3.2-3.8
Condit. Reinf. inactive responses6.68.29.2-3.0-2.5-3.0
Condit. Reinf. lever presses13.819.029.3-5.4-3.2-4.1
Condit. Reinf. lever reinforcers received10.414.719.6-4.4-3.2-3.8
Pavlov. Cond. lever latency13.518.431.35.63.03.9
Pavlov. Cond. magazine entry latency2.32.65.4-2.3-0.9-1.3
Pavlov. Cond. change in total contacts8.812.222.9-4.8-2.2-3.0
Pavlov. Cond. index score10.013.022.9-4.8-2.4-3.2
Pavlov. Cond. latency score8.711.019.8-4.5-2.2-2.9
Pavlov. Cond. lever contacts13.919.432.6-5.7-3.1-4.0
Pavlov. Cond. magazine entry number3.84.710.33.21.01.7
Pavlov. Cond. intertrial magazine entries0.91.11.8-0.3-1.3-1.2
Pavlov. Cond. lever-magazine prob. diff.9.812.721.7-4.7-2.5-3.2
Pavlov. Cond. response bias13.618.732.5-5.7-2.9-3.9
Conditioned reinforcement - actives0.40.41.2-1.10.1-0.1
Conditioned reinforcement - inactives0.30.30.80.90.00.4
Conditioned locomotion0.40.50.8-0.50.90.5
Intermittent access intake day 1-15 change0.20.20.7-0.8-0.0-0.2
Intermittent access intake escalation0.30.30.9-1.00.0-0.3
Intermittent access intake escalation 20.40.40.5-0.7-0.5-0.6
Intermitt. access day 1 inactive lever presses0.20.30.70.80.00.3
Intermitt. access day 15 inactive lever presses0.40.40.60.40.80.6
Intermitt. access escalation Index0.10.10.1-0.3-0.0-0.2
Intermittent access day 1 total infusions0.60.60.9-0.9-0.6-0.8
Intermittent access day 15 total infusions0.40.51.3-1.1-0.1-0.5
Intermittent access terminal intake (last 3 days)0.50.61.2-1.1-0.4-0.7
Intermittent access total infusions0.30.30.6-0.7-0.4-0.5
Intermittent access day 1 locomotion0.10.10.20.00.50.4
Intermittent access day 15 total locomotion0.20.30.7-0.80.2-0.1
Intermittent access total locomotion0.10.20.4-0.6-0.1-0.3
Intermittent access standard deviation0.10.20.2-0.2-0.4-0.5
Cocaine induced anxiety1.11.32.21.50.81.1
Post-drug Anxiety0.10.20.40.6-0.00.3
Baseline Anxiety1.61.72.5-1.6-1.1-1.2
Lifetime Intake0.40.50.8-0.9-0.5-0.6
Incentive Sensitization - Responses2.72.73.6-1.9-1.4-1.6
Incentive Sensitization - Breakpoint2.32.33.4-1.9-1.2-1.4
Progressive ratio test 1 active lever presses0.40.40.70.80.30.6
Progressive ratio test 1 breakpoint0.20.20.50.70.10.4
Progressive ratio test 1 inactive lever presses0.20.20.3-0.2-0.5-0.4
Progressive ratio test 2 active lever presses1.01.11.3-1.2-0.9-1.0
Progressive ratio test 2 breakpoint1.11.21.5-1.2-1.0-1.1
Progressive ratio test 2 inactive lever presses0.20.20.4-0.7-0.1-0.3
Total sessions with >9 infusions0.80.82.0-1.4-0.3-0.6
Short access day 1 total inactive lever presses0.40.40.60.80.50.6
Short access day 10 total inactive lever presses0.30.30.30.50.60.5
Short access day 1 total infusions1.51.52.0-1.4-1.1-1.2
Short access day 10 total infusions0.91.01.0-0.9-1.0-1.0
Short access total infusions0.70.80.8-0.9-0.9-0.9
Short access day 1 locomotion0.30.30.8-0.90.30.1
Short access day 10 total locomotion0.20.20.4-0.6-0.3-0.4
Short access total locomotion0.00.00.1-0.3-0.10.0
Compulsive drug intake0.20.20.4-0.00.70.5
One hour access (0.3 mA shock)1.01.22.4-1.6-0.6-0.9
One hour access (shock baseline)0.80.91.5-1.2-0.7-0.9
Number of responses in last shaping day0.90.91.1-0.8-1.0-1.0
Context. condit. distance diff. score0.60.81.9-1.4-0.2-0.6
Locomotion velocity, session 11.21.32.30.51.51.2
Locomotion distance, session 10.30.40.8-0.90.60.2
Locomotion velocity, session 20.00.10.1-0.40.1-0.1
Locomotion distance, session 20.20.30.7-0.90.4-0.1
Locomotion velocity, session 30.30.30.4-0.60.70.4
Locomotion distance, session 30.40.50.7-0.70.80.4
Stereotopy head waving bouts, day 30.10.10.20.3-0.5-0.3
Stereotopy head waving duration, day 30.00.00.1-0.30.1-0.0
Locomotion velocity, session 70.30.40.50.60.50.7
Locomotion distance, session 70.00.00.10.3-0.20.1
Stereotopy head waving bouts, day 70.70.82.1-1.40.1-0.5
Stereotopy head waving duration, day 71.21.53.4-1.9-0.4-1.0
Locomotion velocity, session 80.40.51.0-1.0-0.3-0.6
Locomotion distance, session 80.81.23.0-1.7-0.2-0.7
Degree of sensitization distance1.41.42.80.2-1.7-1.2
Degree of sensitization stereotypy1.81.95.1-2.3-0.1-0.8
Condit. Reinf. active minus inactive responses0.60.71.0-0.6-0.9-1.0
Condit. Reinf. active-inactive response ratio1.51.62.2-0.9-1.3-1.5
Condit. Reinf. active responses0.10.10.2-0.3-0.3-0.4
Condit. Reinf. inactive responses0.20.20.30.20.60.5
Incentive salience index mean0.50.70.9-0.8-0.7-0.9
Condit. Reinf. lever presses0.10.20.4-0.6-0.2-0.4
Time in familiar zone, hab. session 10.10.10.20.0-0.4-0.3
Time in novel zone, hab. session 10.10.10.10.4-0.00.1
Total zone transitions, hab. session 10.30.40.80.10.90.7
Total locomotion distance, hab. session 10.30.50.90.4-1.0-0.6
Locomotion velocity, hab. session 10.20.30.60.2-0.8-0.5
Time in familiar zone, hab. session 21.41.51.8-1.3-1.0-1.3
Time in novel zone, hab. session 20.70.71.00.70.91.0
Total zone transitions, hab. session 20.40.51.5-1.20.3-0.0
Total locomotion distance, hab. session 20.81.11.7-0.6-1.3-1.2
Locomotion velocity, hab. session 20.91.32.1-0.5-1.4-1.2
Novel to familiar place preference ratio0.00.00.0-0.1-0.00.1
Novelty place preference0.00.00.0-0.10.10.1
Time in novel zone, NPP test0.00.00.1-0.20.10.0
Total zone transitions, NPP test0.20.30.6-0.30.80.5
Total locomotion distance, NPP test0.10.20.40.2-0.6-0.3
Locomotion velocity, NPP test0.10.20.30.5-0.5-0.1
Pavlov. Cond. lever latency1.01.32.11.40.71.2
Pavlov. Cond. magazine entry latency2.93.75.3-2.3-1.5-1.9
Pavlov. Cond. change in total contacts1.11.22.0-1.4-0.7-1.1
Pavlov. Cond. index score3.03.85.4-2.3-1.4-2.0
Pavlov. Cond. latency score2.83.65.2-2.3-1.3-1.9
Pavlov. Cond. lever contacts1.51.82.5-1.6-0.9-1.4
Pavlov. Cond. magazine entry number2.93.65.72.41.31.8
Pavlov. Cond. intertrial magazine entries1.61.92.21.51.31.4
Pavlov. Cond. lever-magazine prob. diff.2.43.04.2-2.1-1.2-1.8
Pavlov. Cond. response bias1.41.72.4-1.6-0.9-1.4
Bone: apparent density0.20.40.60.60.80.5
Bone surface0.61.11.5-1.2-0.7-1.2
Bone volume0.30.50.7-0.8-0.4-0.9
Bone: connectivity density0.20.30.60.10.80.4
Bone: cortical apparent density0.40.51.31.2-0.10.2
Bone: cortical area0.71.11.4-0.9-1.1-1.2
Bone: cortical porosity0.20.30.6-0.80.30.1
Bone: cortical porosity0.20.30.4-0.60.60.3
Bone: cortical thickness0.10.20.30.60.30.4
Bone: cortical thickness0.00.10.1-0.30.20.2
Bone: cortical tissue density0.40.51.41.20.00.3
Bone: elastic displacement2.32.73.51.91.41.6
Bone: elastic work2.73.53.92.01.71.9
Bone: endosteal estimation2.34.95.9-2.0-2.2-2.4
Bone: endosteal perimeter2.75.66.4-2.4-2.2-2.5
Bone: final force0.00.00.10.1-0.3-0.2
Bone: final moment0.10.10.2-0.2-0.4-0.4
Bone: marrow area2.14.45.4-1.8-2.2-2.3
Bone: maximum diameter2.54.65.0-2.2-2.0-2.2
Bone: maximum force0.10.20.2-0.3-0.5-0.5
Bone: maximum moment0.20.40.5-0.5-0.6-0.7
Bone: minimum diameter1.93.54.9-1.0-2.2-2.1
Bone: periosteal estimation2.04.24.9-1.8-2.0-2.2
Bone: periosteal perimeter2.23.64.3-1.9-1.7-2.1
Bone: post-yield work0.20.30.4-0.5-0.5-0.6
Bone: stiffness0.20.30.70.3-0.8-0.5
Bone: tissue strength1.71.62.20.81.51.4
Bone: trabecular number1.42.12.31.51.51.4
Bone: trabecular spacing0.40.51.1-1.1-0.4-0.5
Bone: trabecular thickness0.00.10.10.4-0.1-0.1
Bone: trabecular tissue density0.60.81.60.7-1.3-0.6
Breakpoint value in progressive ratio session0.30.40.50.50.60.7
Distance traveled before self-admin0.20.20.40.60.20.4
Distance traveled after self-admin3.03.43.71.71.81.9
Delta time in closed arm before/after self-admin1.51.42.8-0.1-1.7-1.2
Delta time in open arm before/after self-admin1.81.72.5-1.6-0.9-1.3
Diff in mean of infusions in LGA sessions1.51.73.41.80.61.1
Extinction: sum of active levers before priming0.10.10.10.4-0.10.0
Active lever presses in extinction session 60.60.61.3-1.10.70.3
Delta distance traveled before/after self-admin0.40.40.80.20.90.7
Delta ambulatory time before/after self-admin0.70.81.20.41.11.0
Time in closed arm before self-admin1.31.53.2-0.51.81.0
Time in closed arm after self-admin1.92.02.91.01.71.5
Time in open arm before self-admin1.01.12.91.7-0.10.6
Time in open arm after self-admin2.12.33.7-0.8-1.9-1.6
Sum of active levers in priming session hrs 5-60.10.10.10.10.30.2
Time to tail flick, vehicle, before self-admin0.10.10.30.20.50.3
Time to tail flick, vehicle, after self-admin0.70.72.0-1.4-0.0-0.5
Time to tail flick, test, before self-admin0.80.81.0-0.7-1.0-0.9
Time to tail flick, test, after self-admin1.11.11.5-0.7-1.2-1.2
Delta time to tail flick, vehicle, before/after SA0.70.61.4-1.2-0.5-0.5
Delta time to tail flick, test, before/after SA0.20.10.30.50.20.3
Ambulatory time before self-admin0.80.91.21.10.80.9
Ambulatory time after self-admin4.34.85.41.92.32.3
Total heroin consumption0.00.00.1-0.30.1-0.1
Area under the delay curve0.20.20.4-0.2-0.6-0.3
Delay disc. indifference point, 0s delay0.90.91.7-1.3-0.7-0.8
Delay disc. indifference point, 16s delay0.10.10.20.50.20.4
Delay disc. indifference point, 2s delay1.82.02.6-1.4-1.6-1.3
Delay disc. indifference point, 24s delay0.60.61.11.00.50.7
Delay disc. indifference point, 4s delay1.51.61.8-1.4-1.3-1.2
Delay disc. indifference point, 8s delay0.30.30.4-0.5-0.7-0.5
Delay discount exponential model param0.10.10.30.10.60.3
Delay discount hyperbolic model param0.40.40.70.40.80.5
Fecal boli incidents, locomotor time 10.20.20.4-0.50.60.2
Change in fecal boli incidents, locomotor task0.60.61.11.00.30.8
Time >=10cm from walls, locomotor time 10.50.51.3-1.2-0.1-0.2
Bouts of movement, locomotor time 10.10.10.2-0.40.10.0
Total resting periods, locomotor time 10.30.30.60.00.80.6
Rest time, locomotor task time 10.80.91.10.81.01.0
Distance moved, locomotor task time 11.51.62.1-0.9-1.5-1.4
Vertical activity count, locomotor time 11.92.02.4-1.2-1.6-1.4
Time >=10cm from walls, locomotor time 20.90.91.6-1.2-0.7-0.8
Bouts of movement, locomotor time 20.91.01.2-0.8-1.1-1.0
Total resting periods, locomotor time 20.60.60.9-0.6-1.0-0.8
Rest time, locomotor task time 21.72.02.91.71.01.4
Distance moved, locomotor task time 23.03.54.4-2.1-1.5-1.9
Vertical activity count, locomotor time 22.83.13.5-1.6-1.8-1.9
Weight adjusted by age1.51.72.3-1.0-1.4-1.5
Seeking ratio, delayed vs. immediate footshock2.42.73.31.51.81.6
Locomotion in novel chamber0.40.51.0-0.51.00.4
Locomotion in novel chamber post-restriction0.60.72.0-1.4-0.1-0.1
Progressive ratio0.10.10.20.20.50.4
Food seeking constrained by brief footshock2.02.42.8-1.4-1.6-1.7
Seeking ratio, punishment vs. effort2.22.73.3-1.4-1.8-1.8
Run reversals in cocaine runway, females3.53.56.4-0.2-2.5-2.0
Run reversals in cocaine runway, males0.00.00.0-0.10.10.2
Latency to leave start box in cocaine runway0.70.82.01.4-0.30.4
Latency to leave start box in cocaine runway, F0.50.50.90.7-0.9-0.3
Latency to leave start box in cocaine runway, M0.80.80.91.00.80.9
Cd content in liver0.20.20.30.4-0.6-0.3
Co content in liver2.22.62.9-1.7-1.4-1.7
Cu content in liver1.51.82.1-1.3-1.3-1.4
Fe content in liver0.00.00.10.2-0.3-0.1
K content in liver0.10.10.10.0-0.3-0.3
Mg content in liver0.20.20.3-0.6-0.4-0.5
Mn content in liver2.73.13.61.61.81.9
Na content in liver0.10.10.3-0.60.1-0.1
Rb content in liver1.01.21.6-1.3-0.8-1.2
Se content in liver3.64.35.92.41.72.1
Sr content in liver0.30.30.50.20.70.6
Zn content in liver3.84.27.3-2.7-1.3-1.9