Egr3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000017828 0.04 0.04 1.5e-03 0.03 0.02 0.03 0.03 2.1e-03 2.2e-03 2.0e-03 1.8e-03
2 Brain isoform ratio ENSRNOT00000116948 0.03 0.03 4.3e-03 0.01 0.01 0.02 0.01 1.3e-02 2.8e-02 2.7e-03 3.3e-02
3 NAcc isoform ratio ENSRNOT00000116948 0.06 0.06 1.0e-03 0.02 0.03 0.02 0.02 1.1e-02 4.1e-03 1.2e-02 6.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.41.41.5-1.21.11.2
BMI without tail0.71.41.51.2-1.2-1.2
Body weight0.41.81.8-1.31.31.3
Epididymis fat weight2.14.95.12.2-2.2-2.3
Glucose0.00.00.00.1-0.1-0.2
Heart weight0.00.00.10.3-0.2-0.1
Left kidney weight0.20.60.8-0.70.70.9
Right kidney weight0.10.40.60.7-0.6-0.6
Tail length0.82.62.61.6-1.6-1.6
Length with tail0.10.20.3-0.50.50.5
Length without tail3.78.08.4-2.82.82.9
Liver weight, left2.23.63.7-1.91.91.9
Liver weight, right0.71.21.2-1.11.11.1
Parametrial fat weight3.77.27.72.8-2.6-2.6
Retroperitoneal fat weight0.20.70.90.9-0.9-0.8
Intraocular pressure0.40.60.80.7-0.7-0.9
Extensor digitorum longus weight12.450.051.9-7.26.97.1
Soleus weight1.02.82.8-1.71.71.7
Tibialis anterior weight8.127.928.8-5.45.25.3
Tibia length1.23.43.61.9-1.8-1.8
Number of licking bursts0.00.00.0-0.10.10.1
Food consumed during 24 hour testing period0.20.30.30.5-0.5-0.5
Times rat made contact with spout0.40.50.50.7-0.7-0.7
Mean time between licks in bursts2.02.82.91.7-1.6-1.7
Mean num. licks in bursts0.40.50.50.7-0.7-0.7
Std. dev. time between licks in bursts1.41.71.71.3-1.3-1.3
Water consumed over 24 hours1.41.61.7-1.31.21.3
Indifference point 0 sec2.03.33.41.8-1.8-1.9
Indifference point AUC0.60.70.8-0.90.90.8
Indifference point function ln k0.00.00.00.2-0.2-0.1
Indifference point function log k0.00.00.00.2-0.2-0.1
Delay discounting total patch changes 0 sec1.72.72.91.6-1.6-1.7
Delay discounting total patch changes 12 sec0.60.80.90.9-0.9-1.0
Delay discounting total patch changes 18 sec1.72.22.51.4-1.4-1.6
Delay discounting total patch changes 24 sec0.00.00.0-0.10.0-0.1
Delay discounting total patch changes 6 sec0.30.40.50.6-0.6-0.7
Delay discounting time to switch 0 sec0.71.11.21.0-1.0-1.1
Delay discounting water rate 0 sec0.30.50.6-0.70.70.8
Delay discounting water rate 12 sec0.60.81.0-0.90.91.0
Delay discounting water rate 18 sec2.93.84.1-1.91.92.0
Delay discounting water rate 24 sec0.00.00.1-0.10.10.3
Delay discounting water rate 6 sec2.02.93.1-1.71.71.7
Locomotor activity1.32.12.3-1.41.41.5
Locomotor testing distance0.00.00.00.1-0.1-0.0
Locomotor testing rearing0.20.30.30.6-0.6-0.6
Light reinforcement 13.36.16.32.5-2.4-2.5
Light reinforcement 21.31.71.81.3-1.3-1.4
Reaction time number correct0.50.80.9-0.80.90.9
Reaction time mean minus median0.20.20.3-0.50.50.4
Reaction time mean minus median AUC0.10.20.2-0.50.40.4
Reaction time num false alarms0.00.00.1-0.10.10.2
Reaction time num false alarms AUC0.00.00.00.1-0.10.0
Reaction time trials correct on left0.50.80.9-0.80.90.9
Reaction time trials on left0.40.60.6-0.70.70.8
Reaction time mean0.20.30.5-0.70.50.5
Reaction time mean AUC0.40.60.7-0.90.70.7
Median of all reaction times0.10.10.2-0.40.30.2
Reaction time omissions2.12.83.11.6-1.6-1.8
Reaction time false alarm rate0.20.20.30.5-0.5-0.4
Reaction time premature initiation rate1.41.92.1-1.41.41.3
Reaction time premature initiations2.13.03.1-1.81.71.7
Std. dev. reaction times0.20.30.4-0.60.50.5
Reaction time trials completed0.40.60.6-0.70.70.8
Reaction time trials AUC0.40.50.6-0.70.70.8
Social response proportion0.10.10.1-0.20.20.3
Social responses1.01.31.41.2-1.1-1.2
Social time0.40.50.60.8-0.7-0.7
Conditioned locomotion0.00.00.00.2-0.2-0.2
Cocaine response after cond. corrected0.30.30.3-0.60.50.5
Cocaine response after cond. not corrected0.20.20.2-0.50.40.4
Cocaine response before conditioning0.10.20.20.4-0.4-0.4
Saline control response0.20.30.30.5-0.5-0.5
Condit. Reinf. active minus inactive responses0.30.30.40.6-0.6-0.6
Condit. Reinf. active-inactive response ratio0.10.10.2-0.40.40.4
Condit. Reinf. active responses0.81.21.21.1-1.1-1.1
Condit. Reinf. inactive responses2.32.82.91.7-1.6-1.7
Condit. Reinf. lever presses0.10.10.10.3-0.3-0.3
Condit. Reinf. lever reinforcers received0.50.80.80.9-0.9-0.9
Pavlov. Cond. lever latency0.30.50.50.7-0.7-0.7
Pavlov. Cond. magazine entry latency0.10.10.10.3-0.2-0.3
Pavlov. Cond. change in total contacts1.62.22.3-1.51.51.5
Pavlov. Cond. index score0.50.60.7-0.80.80.8
Pavlov. Cond. latency score0.30.40.4-0.60.60.6
Pavlov. Cond. lever contacts0.40.50.5-0.70.70.7
Pavlov. Cond. magazine entry number0.00.10.1-0.20.20.3
Pavlov. Cond. intertrial magazine entries6.17.88.22.9-2.7-2.8
Pavlov. Cond. lever-magazine prob. diff.0.60.70.8-0.90.90.9
Pavlov. Cond. response bias0.40.60.6-0.80.80.8
Conditioned reinforcement - actives2.72.72.81.7-1.6-1.6
Conditioned reinforcement - inactives3.03.43.41.9-1.8-1.8
Conditioned locomotion1.01.21.21.1-1.1-1.1
Intermittent access intake day 1-15 change2.12.02.11.4-1.4-1.4
Intermittent access intake escalation1.31.31.31.2-1.1-1.2
Intermittent access intake escalation 20.40.40.40.6-0.6-0.6
Intermitt. access day 1 inactive lever presses0.10.10.10.3-0.2-0.3
Intermitt. access day 15 inactive lever presses0.00.00.00.1-0.1-0.1
Intermitt. access escalation Index0.50.40.4-0.60.60.6
Intermittent access day 1 total infusions0.00.00.00.2-0.2-0.2
Intermittent access day 15 total infusions1.01.11.11.0-1.0-1.0
Intermittent access terminal intake (last 3 days)0.20.20.20.5-0.5-0.5
Intermittent access total infusions0.40.50.50.7-0.7-0.7
Intermittent access day 1 locomotion0.30.30.40.6-0.6-0.6
Intermittent access day 15 total locomotion1.51.51.61.3-1.2-1.3
Intermittent access total locomotion0.50.50.50.7-0.7-0.7
Intermittent access standard deviation1.21.31.31.1-1.1-1.1
Cocaine induced anxiety0.10.10.1-0.40.40.4
Post-drug Anxiety0.50.50.50.7-0.7-0.7
Baseline Anxiety0.80.80.90.9-0.9-0.9
Lifetime Intake0.40.50.50.7-0.7-0.7
Incentive Sensitization - Responses1.01.01.01.0-1.0-1.0
Incentive Sensitization - Breakpoint1.41.41.51.2-1.1-1.2
Progressive ratio test 1 active lever presses0.20.20.2-0.50.40.4
Progressive ratio test 1 breakpoint0.10.10.1-0.30.20.3
Progressive ratio test 1 inactive lever presses1.61.71.81.3-1.3-1.3
Progressive ratio test 2 active lever presses0.20.20.20.5-0.4-0.5
Progressive ratio test 2 breakpoint0.20.30.30.5-0.5-0.5
Progressive ratio test 2 inactive lever presses0.40.40.50.7-0.6-0.7
Total sessions with >9 infusions0.00.00.00.1-0.2-0.1
Short access day 1 total inactive lever presses0.50.60.60.8-0.7-0.8
Short access day 10 total inactive lever presses0.40.40.40.7-0.6-0.6
Short access day 1 total infusions0.10.10.1-0.30.30.3
Short access day 10 total infusions0.00.00.00.2-0.1-0.2
Short access total infusions0.20.20.20.5-0.5-0.5
Short access day 1 locomotion0.20.20.2-0.50.40.4
Short access day 10 total locomotion0.60.60.70.8-0.8-0.8
Short access total locomotion0.80.80.80.9-0.9-0.9
Compulsive drug intake0.00.00.0-0.10.10.1
One hour access (0.3 mA shock)0.30.30.30.6-0.5-0.6
One hour access (shock baseline)0.00.00.0-0.0-0.0-0.0
Number of responses in last shaping day0.00.00.0-0.00.10.0
Context. condit. distance diff. score0.81.01.01.0-1.0-1.0
Locomotion velocity, session 10.20.20.2-0.40.40.4
Locomotion distance, session 10.00.00.00.0-0.1-0.1
Locomotion velocity, session 20.00.00.10.2-0.3-0.2
Locomotion distance, session 20.00.00.00.2-0.2-0.2
Locomotion velocity, session 30.50.60.6-0.80.80.7
Locomotion distance, session 30.00.00.00.1-0.1-0.2
Stereotopy head waving bouts, day 30.70.90.9-1.00.90.9
Stereotopy head waving duration, day 32.63.23.3-1.81.81.8
Locomotion velocity, session 74.44.84.92.2-2.2-2.2
Locomotion distance, session 73.44.34.52.1-2.1-2.1
Stereotopy head waving bouts, day 71.61.81.9-1.31.31.4
Stereotopy head waving duration, day 72.32.83.0-1.71.61.7
Locomotion velocity, session 80.00.00.00.1-0.1-0.1
Locomotion distance, session 80.60.90.90.9-0.9-1.0
Degree of sensitization distance4.84.95.12.3-2.2-2.2
Degree of sensitization stereotypy1.01.11.3-1.01.01.1
Condit. Reinf. active minus inactive responses0.60.60.7-0.90.80.7
Condit. Reinf. active-inactive response ratio2.42.62.9-1.71.61.5
Condit. Reinf. active responses0.00.00.0-0.10.10.0
Condit. Reinf. inactive responses2.93.43.51.9-1.8-1.8
Incentive salience index mean0.81.01.1-1.11.00.9
Condit. Reinf. lever presses0.30.40.4-0.60.60.6
Time in familiar zone, hab. session 10.00.00.0-0.10.10.1
Time in novel zone, hab. session 11.31.31.4-1.21.11.1
Total zone transitions, hab. session 10.20.30.4-0.60.60.5
Total locomotion distance, hab. session 10.00.00.0-0.00.0-0.1
Locomotion velocity, hab. session 10.10.10.10.3-0.3-0.4
Time in familiar zone, hab. session 21.92.02.1-1.41.41.5
Time in novel zone, hab. session 20.70.70.80.9-0.8-0.9
Total zone transitions, hab. session 21.51.92.0-1.41.41.4
Total locomotion distance, hab. session 20.30.30.4-0.60.60.5
Locomotion velocity, hab. session 20.60.80.9-0.90.90.9
Novel to familiar place preference ratio1.51.61.71.3-1.2-1.3
Novelty place preference1.21.21.31.1-1.1-1.1
Time in novel zone, NPP test0.60.60.60.8-0.8-0.8
Total zone transitions, NPP test0.10.20.20.4-0.4-0.5
Total locomotion distance, NPP test2.53.43.61.8-1.8-1.9
Locomotion velocity, NPP test2.43.43.61.8-1.8-1.9
Pavlov. Cond. lever latency0.00.00.0-0.00.00.0
Pavlov. Cond. magazine entry latency0.00.10.10.2-0.2-0.2
Pavlov. Cond. change in total contacts1.01.01.1-1.01.01.0
Pavlov. Cond. index score0.00.10.1-0.20.20.3
Pavlov. Cond. latency score0.00.00.0-0.10.10.1
Pavlov. Cond. lever contacts0.00.00.00.1-0.1-0.1
Pavlov. Cond. magazine entry number0.40.50.50.7-0.7-0.7
Pavlov. Cond. intertrial magazine entries0.10.10.10.3-0.3-0.3
Pavlov. Cond. lever-magazine prob. diff.0.10.20.2-0.40.40.4
Pavlov. Cond. response bias0.10.10.2-0.40.40.4
Bone: apparent density1.52.62.71.7-1.6-1.6
Bone surface0.61.11.21.1-1.0-1.0
Bone volume0.81.31.31.2-1.1-1.1
Bone: connectivity density3.04.74.92.2-2.1-2.1
Bone: cortical apparent density0.00.00.00.2-0.2-0.2
Bone: cortical area0.00.00.00.1-0.1-0.1
Bone: cortical porosity1.41.51.6-1.21.21.2
Bone: cortical porosity0.60.60.6-0.80.80.8
Bone: cortical thickness0.00.00.00.2-0.2-0.2
Bone: cortical thickness0.00.00.00.2-0.2-0.2
Bone: cortical tissue density0.00.00.00.2-0.1-0.2
Bone: elastic displacement0.50.60.60.7-0.7-0.8
Bone: elastic work0.30.30.40.6-0.5-0.6
Bone: endosteal estimation0.10.20.3-0.50.40.5
Bone: endosteal perimeter0.10.10.1-0.30.30.4
Bone: final force0.10.20.2-0.40.40.4
Bone: final moment0.10.10.1-0.40.30.4
Bone: marrow area0.10.10.1-0.30.30.4
Bone: maximum diameter0.30.60.6-0.80.70.8
Bone: maximum force0.20.40.4-0.70.60.6
Bone: maximum moment0.10.20.2-0.50.40.5
Bone: minimum diameter0.10.20.3-0.50.40.5
Bone: periosteal estimation0.00.00.1-0.20.20.3
Bone: periosteal perimeter0.00.00.0-0.10.00.1
Bone: post-yield work0.20.20.20.5-0.5-0.4
Bone: stiffness0.60.90.9-1.00.91.0
Bone: tissue strength0.10.10.10.3-0.3-0.3
Bone: trabecular number2.74.34.52.1-2.1-2.0
Bone: trabecular spacing2.43.13.2-1.81.71.8
Bone: trabecular thickness1.21.51.51.2-1.2-1.2
Bone: trabecular tissue density1.41.92.1-1.41.41.4
Breakpoint value in progressive ratio session0.10.10.2-0.50.30.2
Distance traveled before self-admin1.01.01.1-1.01.01.0
Distance traveled after self-admin2.12.42.5-1.51.51.6
Delta time in closed arm before/after self-admin2.12.02.11.5-1.4-1.5
Delta time in open arm before/after self-admin0.00.00.00.2-0.2-0.2
Diff in mean of infusions in LGA sessions2.83.13.5-1.91.71.7
Extinction: sum of active levers before priming2.42.42.51.5-1.5-1.6
Active lever presses in extinction session 60.20.20.30.3-0.4-0.6
Delta distance traveled before/after self-admin2.32.52.6-1.51.61.6
Delta ambulatory time before/after self-admin2.12.32.5-1.51.51.6
Time in closed arm before self-admin1.71.92.2-1.31.31.5
Time in closed arm after self-admin0.50.50.6-0.60.70.8
Time in open arm before self-admin0.10.10.1-0.40.40.3
Time in open arm after self-admin0.00.00.10.2-0.2-0.3
Sum of active levers in priming session hrs 5-60.00.00.1-0.0-0.1-0.2
Time to tail flick, vehicle, before self-admin0.80.80.90.8-0.9-0.9
Time to tail flick, vehicle, after self-admin1.92.12.3-1.51.41.4
Time to tail flick, test, before self-admin0.90.80.90.9-0.9-1.0
Time to tail flick, test, after self-admin3.43.53.61.9-1.8-1.9
Delta time to tail flick, vehicle, before/after SA0.40.30.4-0.60.60.6
Delta time to tail flick, test, before/after SA0.30.30.30.5-0.5-0.5
Ambulatory time before self-admin0.70.70.7-0.90.80.8
Ambulatory time after self-admin3.53.84.1-1.91.92.0
Total heroin consumption0.30.40.4-0.70.50.6
Area under the delay curve0.00.00.1-0.20.20.2
Delay disc. indifference point, 0s delay0.30.30.40.5-0.5-0.6
Delay disc. indifference point, 16s delay0.20.20.20.4-0.4-0.5
Delay disc. indifference point, 2s delay1.51.61.7-1.31.31.3
Delay disc. indifference point, 24s delay0.30.20.3-0.50.50.4
Delay disc. indifference point, 4s delay1.61.71.7-1.31.31.3
Delay disc. indifference point, 8s delay0.00.00.00.1-0.1-0.2
Delay discount exponential model param0.20.30.30.5-0.5-0.5
Delay discount hyperbolic model param0.60.60.60.8-0.8-0.7
Fecal boli incidents, locomotor time 10.80.91.0-1.00.90.9
Change in fecal boli incidents, locomotor task0.10.10.1-0.20.20.3
Time >=10cm from walls, locomotor time 10.80.80.90.9-0.8-1.0
Bouts of movement, locomotor time 14.75.25.5-2.32.22.4
Total resting periods, locomotor time 14.85.35.5-2.32.32.3
Rest time, locomotor task time 13.23.53.6-1.91.81.9
Distance moved, locomotor task time 12.93.23.41.8-1.7-1.9
Vertical activity count, locomotor time 11.11.21.21.1-1.1-1.1
Time >=10cm from walls, locomotor time 20.30.40.4-0.60.60.6
Bouts of movement, locomotor time 23.43.64.0-1.91.92.0
Total resting periods, locomotor time 23.94.14.6-2.02.02.1
Rest time, locomotor task time 20.91.11.2-1.01.01.1
Distance moved, locomotor task time 22.53.03.21.7-1.6-1.8
Vertical activity count, locomotor time 20.30.30.40.5-0.5-0.6
Weight adjusted by age1.92.12.2-1.51.41.4
Seeking ratio, delayed vs. immediate footshock1.21.41.61.2-1.2-1.1
Locomotion in novel chamber0.20.20.20.5-0.4-0.5
Locomotion in novel chamber post-restriction0.60.70.7-0.80.80.9
Progressive ratio0.10.10.10.4-0.3-0.4
Food seeking constrained by brief footshock1.31.61.6-1.31.21.3
Seeking ratio, punishment vs. effort0.91.11.1-1.11.01.1
Run reversals in cocaine runway, females3.93.84.02.0-1.9-2.0
Run reversals in cocaine runway, males2.42.42.4-1.61.51.5
Latency to leave start box in cocaine runway0.60.60.7-0.80.70.8
Latency to leave start box in cocaine runway, F1.51.61.8-1.31.21.3
Latency to leave start box in cocaine runway, M1.31.21.31.1-1.1-1.1
Cd content in liver0.30.30.30.5-0.5-0.6
Co content in liver4.04.74.9-2.22.12.1
Cu content in liver0.50.70.7-0.80.80.8
Fe content in liver2.32.72.91.7-1.6-1.6
K content in liver0.60.60.60.8-0.8-0.8
Mg content in liver1.31.31.31.2-1.1-1.1
Mn content in liver2.02.32.41.5-1.5-1.5
Na content in liver0.60.70.7-0.90.80.8
Rb content in liver0.30.40.40.6-0.6-0.6
Se content in liver0.91.11.21.1-1.0-1.0
Sr content in liver0.40.40.40.6-0.6-0.7
Zn content in liver1.01.11.1-1.11.01.0