Ndufs8

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000017446 0.16 0.1 5.3e-06 0.11 0.1 0.12 0.11 1.6e-06 3.5e-06 9.8e-07 2.4e-06
2 Brain gene expression ENSRNOG00000017446 0.04 0.03 2.8e-03 0.02 0.02 0.01 0.01 7.6e-03 6.2e-03 7.4e-02 2.6e-02
3 PL gene expression ENSRNOG00000017446 0.04 0.03 4.8e-03 0.04 0.02 0.02 0.02 3.3e-04 9.2e-03 6.5e-03 8.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail3.712.113.8-3.3-3.7-3.4
BMI without tail2.04.35.5-1.8-2.3-2.0
Body weight2.510.617.8-4.2-3.0-2.2
Epididymis fat weight1.73.97.62.81.81.0
Glucose0.50.81.61.2-0.3-0.9
Heart weight0.60.92.31.50.60.3
Left kidney weight1.02.93.41.71.91.5
Right kidney weight1.23.54.61.42.12.0
Tail length0.20.50.8-0.80.30.9
Length with tail0.72.67.2-2.7-0.80.1
Length without tail1.12.56.1-2.5-1.1-0.5
Liver weight, left0.10.20.50.70.30.2
Liver weight, right0.30.50.70.40.90.9
Parametrial fat weight0.40.72.11.40.2-0.3
Retroperitoneal fat weight2.99.720.14.52.61.5
Intraocular pressure1.31.82.30.91.51.5
Extensor digitorum longus weight3.313.130.9-5.6-2.6-1.3
Soleus weight3.811.014.43.83.42.6
Tibialis anterior weight3.110.830.8-5.6-1.10.5
Tibia length0.41.12.0-0.31.01.4
Number of licking bursts0.10.10.1-0.1-0.3-0.4
Food consumed during 24 hour testing period0.50.60.70.70.80.7
Times rat made contact with spout1.01.11.4-0.8-1.2-1.1
Mean time between licks in bursts0.40.51.1-1.1-0.6-0.3
Mean num. licks in bursts0.10.10.1-0.1-0.3-0.4
Std. dev. time between licks in bursts0.50.61.0-0.60.61.0
Water consumed over 24 hours0.81.01.1-0.9-1.1-0.9
Indifference point 0 sec0.20.30.70.80.30.1
Indifference point AUC0.81.02.8-1.7-0.20.2
Indifference point function ln k3.34.69.73.11.71.1
Indifference point function log k3.34.69.73.11.71.1
Delay discounting total patch changes 0 sec0.20.30.40.60.50.5
Delay discounting total patch changes 12 sec1.52.04.5-2.1-1.1-0.6
Delay discounting total patch changes 18 sec0.30.40.6-0.8-0.6-0.4
Delay discounting total patch changes 24 sec0.30.41.0-1.0-0.20.2
Delay discounting total patch changes 6 sec1.01.41.8-1.1-1.3-1.2
Delay discounting time to switch 0 sec3.55.36.6-1.8-2.6-2.5
Delay discounting water rate 0 sec6.710.612.72.93.63.3
Delay discounting water rate 12 sec8.913.415.73.54.03.5
Delay discounting water rate 18 sec1.72.32.91.71.61.2
Delay discounting water rate 24 sec4.15.77.02.02.62.4
Delay discounting water rate 6 sec3.24.75.81.82.42.2
Locomotor activity1.11.82.61.61.31.0
Locomotor testing distance1.42.23.61.91.41.1
Locomotor testing rearing0.50.82.31.50.2-0.1
Light reinforcement 10.61.11.41.01.21.0
Light reinforcement 22.12.73.21.81.81.4
Reaction time number correct0.20.30.5-0.70.30.6
Reaction time mean minus median2.12.73.7-1.9-1.6-1.4
Reaction time mean minus median AUC1.01.32.6-1.6-0.9-0.6
Reaction time num false alarms0.40.61.10.10.81.0
Reaction time num false alarms AUC0.20.20.4-0.60.20.6
Reaction time trials correct on left0.20.30.5-0.70.30.6
Reaction time trials on left0.30.40.7-0.80.30.6
Reaction time mean0.20.30.5-0.2-0.6-0.7
Reaction time mean AUC0.20.30.6-0.1-0.6-0.8
Median of all reaction times0.20.30.50.2-0.5-0.7
Reaction time omissions1.11.63.6-1.9-0.9-0.5
Reaction time false alarm rate0.10.10.3-0.00.30.5
Reaction time premature initiation rate1.21.73.3-1.8-1.1-0.6
Reaction time premature initiations1.52.15.6-2.4-0.9-0.2
Std. dev. reaction times0.70.91.1-1.0-1.0-0.9
Reaction time trials completed0.30.40.7-0.80.30.6
Reaction time trials AUC0.20.30.5-0.70.30.5
Social response proportion1.31.41.6-1.3-1.2-1.1
Social responses0.30.41.2-1.1-0.10.1
Social time0.50.71.4-1.2-0.6-0.5
Conditioned locomotion0.91.02.0-1.40.41.0
Cocaine response after cond. corrected0.10.10.20.40.0-0.1
Cocaine response after cond. not corrected0.10.20.30.3-0.4-0.5
Cocaine response before conditioning0.20.20.3-0.4-0.5-0.5
Saline control response1.82.44.2-2.1-1.4-0.9
Condit. Reinf. active minus inactive responses0.50.61.10.6-0.6-1.0
Condit. Reinf. active-inactive response ratio0.60.71.91.40.2-0.3
Condit. Reinf. active responses1.01.42.5-0.1-1.3-1.6
Condit. Reinf. inactive responses1.62.02.5-1.2-1.6-1.5
Condit. Reinf. lever presses1.31.82.2-1.1-1.5-1.4
Condit. Reinf. lever reinforcers received1.31.83.0-0.4-1.5-1.7
Pavlov. Cond. lever latency0.00.10.10.20.30.3
Pavlov. Cond. magazine entry latency3.84.45.0-2.1-2.2-2.0
Pavlov. Cond. change in total contacts0.81.01.5-0.6-1.2-1.2
Pavlov. Cond. index score1.11.51.7-1.1-1.3-1.2
Pavlov. Cond. latency score0.91.11.3-0.9-1.1-1.1
Pavlov. Cond. lever contacts0.00.00.0-0.10.20.2
Pavlov. Cond. magazine entry number4.85.96.62.52.62.3
Pavlov. Cond. intertrial magazine entries1.31.72.51.61.21.0
Pavlov. Cond. lever-magazine prob. diff.1.51.92.2-1.3-1.5-1.3
Pavlov. Cond. response bias0.70.91.1-1.0-1.0-0.9
Conditioned reinforcement - actives0.70.71.00.61.00.9
Conditioned reinforcement - inactives3.74.27.92.81.81.2
Conditioned locomotion8.29.912.03.53.32.6
Intermittent access intake day 1-15 change2.12.12.91.71.41.2
Intermittent access intake escalation1.51.42.61.61.10.7
Intermittent access intake escalation 21.01.01.41.21.00.8
Intermitt. access day 1 inactive lever presses0.80.81.81.30.70.4
Intermitt. access day 15 inactive lever presses1.01.13.01.70.50.1
Intermitt. access escalation Index2.11.92.21.51.41.1
Intermittent access day 1 total infusions1.51.72.91.7-0.7-1.3
Intermittent access day 15 total infusions3.53.910.33.21.20.3
Intermittent access terminal intake (last 3 days)2.12.36.52.60.5-0.2
Intermittent access total infusions1.01.23.21.80.1-0.5
Intermittent access day 1 locomotion0.91.01.70.6-0.9-1.3
Intermittent access day 15 total locomotion1.71.84.52.10.90.3
Intermittent access total locomotion1.51.74.72.20.3-0.5
Intermittent access standard deviation0.70.71.31.20.80.5
Cocaine induced anxiety0.00.00.10.20.10.0
Post-drug Anxiety0.20.20.5-0.7-0.10.2
Baseline Anxiety0.60.71.9-1.4-0.40.1
Lifetime Intake0.80.92.41.5-0.0-0.6
Incentive Sensitization - Responses0.10.10.30.60.20.0
Incentive Sensitization - Breakpoint0.30.30.60.80.40.2
Progressive ratio test 1 active lever presses1.01.01.71.31.00.7
Progressive ratio test 1 breakpoint1.11.11.61.21.00.8
Progressive ratio test 1 inactive lever presses0.10.10.20.40.30.1
Progressive ratio test 2 active lever presses1.71.83.81.91.10.6
Progressive ratio test 2 breakpoint2.73.05.12.31.61.2
Progressive ratio test 2 inactive lever presses3.13.68.83.01.30.5
Total sessions with >9 infusions0.20.20.50.70.2-0.1
Short access day 1 total inactive lever presses1.21.33.01.70.80.4
Short access day 10 total inactive lever presses0.70.82.01.40.50.2
Short access day 1 total infusions0.80.82.31.50.0-0.4
Short access day 10 total infusions1.51.62.90.4-1.3-1.7
Short access total infusions0.40.40.70.5-0.6-0.8
Short access day 1 locomotion0.40.40.91.0-0.1-0.5
Short access day 10 total locomotion0.20.20.30.4-0.3-0.6
Short access total locomotion0.20.20.30.1-0.4-0.5
Compulsive drug intake1.41.33.7-1.9-0.50.1
One hour access (0.3 mA shock)4.24.911.03.31.70.9
One hour access (shock baseline)4.95.712.13.52.01.1
Number of responses in last shaping day0.40.40.50.60.70.6
Context. condit. distance diff. score0.30.41.01.00.40.0
Locomotion velocity, session 10.00.00.0-0.1-0.1-0.1
Locomotion distance, session 11.82.33.0-1.0-1.7-1.7
Locomotion velocity, session 21.41.63.3-1.8-1.0-0.6
Locomotion distance, session 21.21.71.9-1.4-1.4-1.2
Locomotion velocity, session 31.31.52.3-0.4-1.4-1.5
Locomotion distance, session 30.10.10.2-0.2-0.3-0.4
Stereotopy head waving bouts, day 30.70.91.50.5-0.9-1.2
Stereotopy head waving duration, day 30.40.51.21.1-0.2-0.6
Locomotion velocity, session 70.80.91.4-0.3-1.1-1.2
Locomotion distance, session 70.30.40.5-0.7-0.7-0.6
Stereotopy head waving bouts, day 70.50.50.90.5-0.7-0.9
Stereotopy head waving duration, day 72.02.43.3-1.0-1.8-1.7
Locomotion velocity, session 80.91.12.0-1.4-0.9-0.7
Locomotion distance, session 80.10.10.30.3-0.2-0.5
Degree of sensitization distance0.50.50.6-0.5-0.8-0.7
Degree of sensitization stereotypy0.70.81.1-0.5-1.1-1.0
Condit. Reinf. active minus inactive responses0.40.50.6-0.5-0.8-0.8
Condit. Reinf. active-inactive response ratio0.10.10.2-0.1-0.4-0.5
Condit. Reinf. active responses0.00.00.1-0.2-0.2-0.2
Condit. Reinf. inactive responses0.10.10.10.10.30.3
Incentive salience index mean0.40.40.5-0.6-0.7-0.7
Condit. Reinf. lever presses0.00.00.1-0.30.10.2
Time in familiar zone, hab. session 10.10.10.30.5-0.0-0.3
Time in novel zone, hab. session 10.00.00.0-0.10.10.2
Total zone transitions, hab. session 10.40.60.8-0.9-0.8-0.6
Total locomotion distance, hab. session 10.20.20.70.80.2-0.0
Locomotion velocity, hab. session 10.00.10.20.40.10.0
Time in familiar zone, hab. session 20.30.30.5-0.70.20.5
Time in novel zone, hab. session 20.70.71.20.0-0.9-1.1
Total zone transitions, hab. session 24.55.87.3-1.6-2.7-2.7
Total locomotion distance, hab. session 20.91.22.1-0.2-1.2-1.5
Locomotion velocity, hab. session 20.60.91.60.1-1.0-1.3
Novel to familiar place preference ratio0.50.60.7-0.5-0.9-0.9
Novelty place preference0.40.40.6-0.2-0.7-0.8
Time in novel zone, NPP test0.40.40.7-0.2-0.8-0.8
Total zone transitions, NPP test1.72.42.9-1.5-1.7-1.5
Total locomotion distance, NPP test0.20.30.50.0-0.5-0.7
Locomotion velocity, NPP test0.10.10.30.1-0.3-0.5
Pavlov. Cond. lever latency0.20.30.30.60.50.5
Pavlov. Cond. magazine entry latency0.60.81.3-0.0-1.0-1.2
Pavlov. Cond. change in total contacts0.10.10.20.5-0.2-0.4
Pavlov. Cond. index score0.00.00.00.20.0-0.0
Pavlov. Cond. latency score0.00.00.10.1-0.2-0.3
Pavlov. Cond. lever contacts0.10.10.1-0.2-0.3-0.3
Pavlov. Cond. magazine entry number0.10.10.1-0.3-0.3-0.3
Pavlov. Cond. intertrial magazine entries0.70.81.10.61.01.0
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.0-0.1-0.1
Pavlov. Cond. response bias0.00.00.00.10.00.0
Bone: apparent density2.54.26.7-0.5-2.4-2.6
Bone surface4.27.59.3-2.1-3.1-3.0
Bone volume2.33.85.6-0.9-2.2-2.4
Bone: connectivity density4.57.19.4-1.7-3.1-3.0
Bone: cortical apparent density0.20.30.8-0.9-0.30.0
Bone: cortical area0.20.20.4-0.60.20.5
Bone: cortical porosity0.10.10.1-0.2-0.3-0.3
Bone: cortical porosity0.20.30.5-0.7-0.4-0.3
Bone: cortical thickness1.22.05.3-2.30.00.9
Bone: cortical thickness0.50.61.7-1.3-0.30.3
Bone: cortical tissue density0.30.41.0-1.0-0.30.1
Bone: elastic displacement2.42.74.20.61.92.1
Bone: elastic work0.50.71.4-1.20.30.8
Bone: endosteal estimation0.40.92.11.4-0.1-0.8
Bone: endosteal perimeter0.91.94.52.1-0.2-1.1
Bone: final force1.22.02.6-1.6-1.5-1.1
Bone: final moment1.01.72.2-1.5-1.3-1.0
Bone: marrow area0.40.92.11.4-0.1-0.8
Bone: maximum diameter0.10.30.30.50.60.5
Bone: maximum force3.05.26.3-1.9-2.5-2.4
Bone: maximum moment2.54.45.2-1.7-2.3-2.2
Bone: minimum diameter0.61.12.00.9-0.8-1.4
Bone: periosteal estimation0.00.10.20.40.1-0.1
Bone: periosteal perimeter0.10.20.40.3-0.4-0.6
Bone: post-yield work4.66.211.2-0.1-2.7-3.3
Bone: stiffness2.84.55.5-1.5-2.4-2.3
Bone: tissue strength0.00.00.10.1-0.1-0.3
Bone: trabecular number2.23.55.3-0.6-2.2-2.3
Bone: trabecular spacing0.70.91.40.11.11.2
Bone: trabecular thickness0.91.11.61.0-0.9-1.3
Bone: trabecular tissue density5.27.28.42.92.82.3
Breakpoint value in progressive ratio session1.41.52.3-1.5-1.2-0.9
Distance traveled before self-admin0.10.10.2-0.1-0.5-0.4
Distance traveled after self-admin0.10.10.10.3-0.2-0.2
Delta time in closed arm before/after self-admin0.50.51.4-1.2-0.10.2
Delta time in open arm before/after self-admin0.10.10.20.50.0-0.1
Diff in mean of infusions in LGA sessions0.10.10.2-0.5-0.20.0
Extinction: sum of active levers before priming3.23.33.7-1.9-1.9-1.5
Active lever presses in extinction session 60.50.51.0-1.00.40.6
Delta distance traveled before/after self-admin0.00.00.10.30.10.1
Delta ambulatory time before/after self-admin0.00.00.00.00.10.1
Time in closed arm before self-admin0.10.10.10.4-0.0-0.2
Time in closed arm after self-admin0.10.10.2-0.50.20.3
Time in open arm before self-admin0.00.00.1-0.3-0.10.1
Time in open arm after self-admin0.00.00.00.10.10.2
Sum of active levers in priming session hrs 5-61.71.62.90.01.41.7
Time to tail flick, vehicle, before self-admin2.22.33.4-0.3-1.8-1.8
Time to tail flick, vehicle, after self-admin2.62.74.6-2.2-1.5-1.1
Time to tail flick, test, before self-admin1.21.22.0-0.3-1.2-1.4
Time to tail flick, test, after self-admin0.00.00.1-0.3-0.1-0.0
Delta time to tail flick, vehicle, before/after SA1.11.13.0-1.7-0.4-0.1
Delta time to tail flick, test, before/after SA1.31.12.1-0.41.01.5
Ambulatory time before self-admin0.20.20.40.0-0.6-0.6
Ambulatory time after self-admin0.50.50.70.8-0.5-0.8
Total heroin consumption2.42.86.0-2.5-1.4-0.8
Area under the delay curve0.70.71.3-0.3-0.9-1.1
Delay disc. indifference point, 0s delay1.01.11.7-0.4-1.3-1.2
Delay disc. indifference point, 16s delay0.40.41.01.00.5-0.0
Delay disc. indifference point, 2s delay0.10.20.30.3-0.3-0.5
Delay disc. indifference point, 24s delay0.10.10.1-0.10.30.3
Delay disc. indifference point, 4s delay0.50.50.7-0.6-0.6-0.8
Delay disc. indifference point, 8s delay0.50.50.8-0.4-0.7-0.9
Delay discount exponential model param0.50.61.00.30.81.0
Delay discount hyperbolic model param0.60.61.10.40.81.0
Fecal boli incidents, locomotor time 10.00.00.00.00.2-0.2
Change in fecal boli incidents, locomotor task0.40.40.5-0.5-0.7-0.6
Time >=10cm from walls, locomotor time 11.01.01.31.0-0.7-1.2
Bouts of movement, locomotor time 10.30.30.9-1.00.20.3
Total resting periods, locomotor time 10.20.20.3-0.60.40.3
Rest time, locomotor task time 12.32.53.11.61.81.3
Distance moved, locomotor task time 10.80.91.4-0.4-1.2-1.1
Vertical activity count, locomotor time 10.40.41.21.10.0-0.1
Time >=10cm from walls, locomotor time 20.20.20.30.20.60.5
Bouts of movement, locomotor time 20.40.41.2-1.1-0.3-0.1
Total resting periods, locomotor time 20.30.30.7-0.8-0.3-0.2
Rest time, locomotor task time 20.80.92.51.60.2-0.3
Distance moved, locomotor task time 20.30.30.7-0.80.10.4
Vertical activity count, locomotor time 21.31.52.70.01.31.6
Weight adjusted by age0.91.12.3-1.5-0.8-0.5
Seeking ratio, delayed vs. immediate footshock0.70.81.3-0.1-1.0-1.1
Locomotion in novel chamber3.54.310.43.21.40.7
Locomotion in novel chamber post-restriction2.12.44.62.11.41.0
Progressive ratio4.95.77.7-1.5-2.8-2.6
Food seeking constrained by brief footshock0.20.20.3-0.4-0.6-0.4
Seeking ratio, punishment vs. effort3.03.74.91.32.22.1
Run reversals in cocaine runway, females2.82.73.3-1.4-1.8-1.7
Run reversals in cocaine runway, males0.40.40.80.10.70.9
Latency to leave start box in cocaine runway0.60.71.20.1-0.9-1.1
Latency to leave start box in cocaine runway, F0.50.60.9-0.2-0.8-1.0
Latency to leave start box in cocaine runway, M0.00.00.10.3-0.1-0.1
Cd content in liver1.31.41.71.31.21.0
Co content in liver1.01.21.70.41.31.3
Cu content in liver0.10.10.2-0.5-0.00.1
Fe content in liver0.00.00.0-0.2-0.1-0.0
K content in liver2.82.83.5-1.5-1.9-1.7
Mg content in liver2.32.43.9-0.5-1.7-2.0
Mn content in liver1.21.42.9-1.7-1.0-0.6
Na content in liver0.20.20.40.10.50.6
Rb content in liver0.81.01.70.9-0.7-1.3
Se content in liver0.30.40.60.5-0.6-0.8
Sr content in liver0.70.61.7-1.3-0.10.4
Zn content in liver0.40.51.1-1.0-0.6-0.3