Ppme1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability ENSRNOG00000017227 0.24 0.13 0.0e+00 0.18 0.21 0.21 0.21 1.7e-16 1.8e-19 2.7e-19 1.7e-19
2 Liver gene expression ENSRNOG00000017227 0.03 0.02 1.4e-03 0.01 0.01 0.01 0.01 1.0e-02 2.1e-02 3.3e-02 2.7e-02
3 PL mRNA stability ENSRNOG00000017227 0.05 0.04 3.0e-03 0.03 0.03 0.03 0.02 4.7e-03 4.3e-03 1.7e-03 1.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.10.20.60.2-0.80.2
BMI without tail0.30.71.6-0.7-1.3-0.1
Body weight0.31.13.2-0.4-1.80.2
Epididymis fat weight1.12.54.40.9-2.11.5
Glucose0.10.10.2-0.20.4-0.2
Heart weight1.42.02.4-1.51.2-1.5
Left kidney weight0.41.12.6-1.6-0.4-0.8
Right kidney weight0.20.61.3-1.1-0.4-0.5
Tail length0.82.44.4-2.1-1.3-1.0
Length with tail0.41.32.9-1.0-1.7-0.2
Length without tail0.20.50.70.8-0.50.7
Liver weight, left1.32.13.61.0-1.91.3
Liver weight, right2.94.98.11.5-2.82.1
Parametrial fat weight1.52.94.41.3-2.11.6
Retroperitoneal fat weight5.819.130.23.2-5.54.1
Intraocular pressure0.50.71.3-0.61.2-0.7
Extensor digitorum longus weight0.31.12.20.5-1.50.9
Soleus weight0.61.84.20.4-2.01.0
Tibialis anterior weight0.00.10.3-0.4-0.5-0.1
Tibia length2.67.28.1-2.42.8-2.8
Number of licking bursts6.47.68.82.7-2.63.0
Food consumed during 24 hour testing period5.06.06.7-2.42.4-2.6
Times rat made contact with spout0.70.81.40.5-1.20.8
Mean time between licks in bursts2.83.96.9-2.60.2-2.1
Mean num. licks in bursts5.16.17.0-2.52.2-2.7
Std. dev. time between licks in bursts0.50.61.2-1.1-0.6-0.6
Water consumed over 24 hours0.50.50.80.9-0.30.8
Indifference point 0 sec4.47.18.8-3.02.1-2.9
Indifference point AUC0.10.20.4-0.3-0.60.2
Indifference point function ln k2.13.04.5-1.42.1-1.6
Indifference point function log k2.13.04.5-1.42.1-1.6
Delay discounting total patch changes 0 sec3.45.57.0-2.61.8-2.5
Delay discounting total patch changes 12 sec0.71.01.9-1.40.1-1.0
Delay discounting total patch changes 18 sec2.02.74.0-2.01.0-1.8
Delay discounting total patch changes 24 sec0.50.60.9-1.0-0.1-0.9
Delay discounting total patch changes 6 sec0.81.21.4-1.21.0-1.0
Delay discounting time to switch 0 sec3.55.47.62.8-1.62.5
Delay discounting water rate 0 sec3.55.66.7-2.61.9-2.5
Delay discounting water rate 12 sec2.63.95.0-1.91.8-2.2
Delay discounting water rate 18 sec1.01.41.9-1.30.7-1.4
Delay discounting water rate 24 sec2.12.84.3-1.42.1-1.6
Delay discounting water rate 6 sec1.52.12.5-1.31.5-1.6
Locomotor activity0.91.41.7-1.31.2-1.0
Locomotor testing distance1.93.24.5-2.11.3-1.8
Locomotor testing rearing0.40.61.4-1.2-0.1-0.6
Light reinforcement 12.74.96.32.2-1.92.5
Light reinforcement 20.10.20.30.50.00.5
Reaction time number correct0.50.82.0-0.41.4-0.4
Reaction time mean minus median0.60.81.3-1.10.3-0.9
Reaction time mean minus median AUC1.31.72.2-1.51.0-1.4
Reaction time num false alarms2.73.74.41.8-1.92.1
Reaction time num false alarms AUC1.31.82.21.3-1.21.5
Reaction time trials correct on left0.50.82.0-0.41.4-0.4
Reaction time trials on left0.50.82.0-0.41.4-0.4
Reaction time mean1.21.62.01.1-1.41.3
Reaction time mean AUC1.51.92.01.4-1.41.4
Median of all reaction times2.02.72.81.6-1.61.7
Reaction time omissions0.40.60.70.6-0.80.8
Reaction time false alarm rate2.13.03.61.5-1.91.7
Reaction time premature initiation rate0.70.91.7-1.3-0.6-0.8
Reaction time premature initiations0.81.22.2-1.50.4-1.1
Std. dev. reaction times0.20.20.6-0.4-0.80.0
Reaction time trials completed0.50.82.0-0.41.4-0.4
Reaction time trials AUC0.40.61.6-0.51.3-0.4
Social response proportion0.60.70.90.7-1.00.7
Social responses0.91.22.40.7-1.60.9
Social time2.53.24.82.2-1.21.9
Conditioned locomotion0.00.00.10.20.20.1
Cocaine response after cond. corrected2.83.13.61.6-1.91.8
Cocaine response after cond. not corrected0.80.91.00.9-1.00.9
Cocaine response before conditioning2.73.33.9-1.62.0-1.9
Saline control response1.62.13.1-1.80.7-1.6
Condit. Reinf. active minus inactive responses6.47.911.4-3.41.7-3.1
Condit. Reinf. active-inactive response ratio1.81.92.4-1.61.0-1.5
Condit. Reinf. active responses7.610.615.9-4.01.8-3.5
Condit. Reinf. inactive responses3.94.87.7-2.81.0-2.4
Condit. Reinf. lever presses17.223.730.3-5.53.5-5.4
Condit. Reinf. lever reinforcers received9.012.718.6-4.32.1-3.9
Pavlov. Cond. lever latency18.525.332.05.7-3.85.5
Pavlov. Cond. magazine entry latency5.15.86.7-2.52.1-2.6
Pavlov. Cond. change in total contacts14.920.824.8-5.03.7-4.9
Pavlov. Cond. index score14.719.223.4-4.83.4-4.8
Pavlov. Cond. latency score13.416.920.5-4.53.2-4.5
Pavlov. Cond. lever contacts19.126.633.3-5.83.9-5.6
Pavlov. Cond. magazine entry number8.911.012.63.4-2.93.6
Pavlov. Cond. intertrial magazine entries0.40.51.40.1-1.20.4
Pavlov. Cond. lever-magazine prob. diff.13.517.521.7-4.73.2-4.6
Pavlov. Cond. response bias19.927.533.6-5.84.1-5.7
Conditioned reinforcement - actives3.93.94.6-1.82.0-2.1
Conditioned reinforcement - inactives0.40.50.80.7-0.90.4
Conditioned locomotion4.14.96.0-1.92.5-2.3
Intermittent access intake day 1-15 change1.01.01.0-0.91.0-1.0
Intermittent access intake escalation1.31.21.4-1.11.2-1.1
Intermittent access intake escalation 20.20.20.5-0.70.3-0.3
Intermitt. access day 1 inactive lever presses0.70.81.00.9-1.00.7
Intermitt. access day 15 inactive lever presses0.20.20.3-0.20.5-0.6
Intermitt. access escalation Index0.60.50.6-0.80.7-0.7
Intermittent access day 1 total infusions1.11.22.1-1.10.6-1.5
Intermittent access day 15 total infusions2.12.33.2-1.41.4-1.8
Intermittent access terminal intake (last 3 days)1.71.82.4-1.41.1-1.6
Intermittent access total infusions1.01.12.0-0.90.6-1.4
Intermittent access day 1 locomotion0.20.20.3-0.20.4-0.6
Intermittent access day 15 total locomotion2.02.12.4-1.31.5-1.5
Intermittent access total locomotion0.80.91.3-1.00.7-1.1
Intermittent access standard deviation0.00.00.1-0.3-0.1-0.1
Cocaine induced anxiety2.12.43.41.5-1.21.8
Post-drug Anxiety1.31.41.71.0-1.21.3
Baseline Anxiety0.80.91.3-1.00.6-1.2
Lifetime Intake1.31.52.7-1.10.8-1.6
Incentive Sensitization - Responses2.32.34.1-2.00.9-1.4
Incentive Sensitization - Breakpoint2.32.34.0-2.01.0-1.4
Progressive ratio test 1 active lever presses0.20.20.30.6-0.40.2
Progressive ratio test 1 breakpoint0.20.20.30.5-0.50.2
Progressive ratio test 1 inactive lever presses0.20.20.6-0.2-0.3-0.8
Progressive ratio test 2 active lever presses0.91.01.7-1.30.5-1.0
Progressive ratio test 2 breakpoint0.91.01.8-1.30.5-1.0
Progressive ratio test 2 inactive lever presses1.01.21.9-1.00.8-1.4
Total sessions with >9 infusions3.03.25.4-1.51.5-2.3
Short access day 1 total inactive lever presses0.20.30.60.8-0.40.1
Short access day 10 total inactive lever presses0.10.10.10.40.10.3
Short access day 1 total infusions2.32.53.8-1.60.9-1.9
Short access day 10 total infusions0.91.01.8-1.10.4-1.4
Short access total infusions0.80.91.9-0.90.2-1.4
Short access day 1 locomotion2.72.83.6-1.41.7-1.9
Short access day 10 total locomotion0.40.40.8-0.90.4-0.5
Short access total locomotion0.20.20.3-0.40.3-0.5
Compulsive drug intake0.10.10.30.00.6-0.0
One hour access (0.3 mA shock)2.12.43.3-1.61.2-1.8
One hour access (shock baseline)1.51.82.4-1.50.9-1.5
Number of responses in last shaping day0.10.10.3-0.6-0.1-0.3
Context. condit. distance diff. score3.34.04.4-1.92.0-2.1
Locomotion velocity, session 10.10.10.20.40.40.2
Locomotion distance, session 11.21.51.8-1.11.4-1.3
Locomotion velocity, session 20.00.00.1-0.30.1-0.2
Locomotion distance, session 20.60.80.9-0.80.9-0.9
Locomotion velocity, session 31.11.31.9-0.91.4-1.1
Locomotion distance, session 32.12.33.2-1.31.8-1.5
Stereotopy head waving bouts, day 30.60.71.10.7-1.00.8
Stereotopy head waving duration, day 30.10.10.2-0.30.4-0.3
Locomotion velocity, session 70.10.20.30.5-0.10.4
Locomotion distance, session 70.20.20.20.5-0.40.5
Stereotopy head waving bouts, day 73.43.84.2-1.91.9-2.0
Stereotopy head waving duration, day 73.74.55.1-2.21.9-2.2
Locomotion velocity, session 80.91.01.2-1.01.0-1.1
Locomotion distance, session 82.84.24.9-2.01.9-2.2
Degree of sensitization distance2.02.03.70.9-1.91.2
Degree of sensitization stereotypy7.37.98.9-2.82.7-3.0
Condit. Reinf. active minus inactive responses0.10.10.1-0.4-0.3-0.2
Condit. Reinf. active-inactive response ratio0.20.30.5-0.7-0.2-0.5
Condit. Reinf. active responses0.00.00.1-0.0-0.30.1
Condit. Reinf. inactive responses0.00.00.00.20.00.2
Incentive salience index mean0.10.10.3-0.5-0.1-0.3
Condit. Reinf. lever presses0.10.10.1-0.40.1-0.3
Time in familiar zone, hab. session 10.10.10.20.0-0.40.1
Time in novel zone, hab. session 10.30.30.40.5-0.40.6
Total zone transitions, hab. session 10.10.20.5-0.00.7-0.3
Total locomotion distance, hab. session 11.42.03.21.0-1.81.3
Locomotion velocity, hab. session 10.71.11.80.7-1.41.0
Time in familiar zone, hab. session 21.31.41.8-1.30.7-1.3
Time in novel zone, hab. session 20.20.20.30.6-0.10.5
Total zone transitions, hab. session 22.02.63.0-1.41.7-1.7
Total locomotion distance, hab. session 20.30.41.10.0-1.10.3
Locomotion velocity, hab. session 20.50.71.80.2-1.30.5
Novel to familiar place preference ratio0.10.10.1-0.30.3-0.3
Novelty place preference0.10.10.1-0.30.3-0.3
Time in novel zone, NPP test0.30.30.3-0.60.5-0.5
Total zone transitions, NPP test0.40.60.9-0.61.0-0.7
Total locomotion distance, NPP test0.81.12.00.6-1.40.9
Locomotion velocity, NPP test1.21.82.81.0-1.71.3
Pavlov. Cond. lever latency1.21.62.01.4-0.91.4
Pavlov. Cond. magazine entry latency2.83.64.7-2.21.3-2.1
Pavlov. Cond. change in total contacts1.31.41.9-1.40.8-1.3
Pavlov. Cond. index score2.73.54.7-2.21.2-2.1
Pavlov. Cond. latency score2.73.44.6-2.11.2-2.0
Pavlov. Cond. lever contacts1.01.21.8-1.30.6-1.2
Pavlov. Cond. magazine entry number3.54.45.42.3-1.52.3
Pavlov. Cond. intertrial magazine entries0.91.11.61.3-0.71.1
Pavlov. Cond. lever-magazine prob. diff.2.22.83.7-1.91.1-1.8
Pavlov. Cond. response bias1.01.31.8-1.30.6-1.2
Bone: apparent density0.00.10.10.20.40.1
Bone surface0.81.31.7-1.30.9-1.3
Bone volume0.50.91.0-1.00.8-1.0
Bone: connectivity density0.20.30.7-0.20.8-0.4
Bone: cortical apparent density2.73.53.81.7-1.92.0
Bone: cortical area0.20.30.6-0.80.1-0.6
Bone: cortical porosity1.51.72.1-1.11.5-1.3
Bone: cortical porosity1.31.42.0-1.01.4-1.2
Bone: cortical thickness0.10.10.20.4-0.20.4
Bone: cortical thickness0.30.30.5-0.40.7-0.5
Bone: cortical tissue density2.63.43.71.7-1.91.9
Bone: elastic displacement1.71.92.81.7-0.71.6
Bone: elastic work1.21.62.61.6-0.51.4
Bone: endosteal estimation0.71.42.6-1.60.0-1.3
Bone: endosteal perimeter1.12.23.8-1.90.5-1.6
Bone: final force0.00.00.00.1-0.20.2
Bone: final moment0.00.00.0-0.2-0.0-0.1
Bone: marrow area0.51.02.0-1.4-0.1-1.1
Bone: maximum diameter1.22.33.6-1.90.7-1.7
Bone: maximum force0.00.00.0-0.20.1-0.1
Bone: maximum moment0.10.10.2-0.50.2-0.4
Bone: minimum diameter0.20.41.0-0.6-1.0-0.1
Bone: periosteal estimation0.61.32.3-1.50.1-1.2
Bone: periosteal perimeter0.91.52.6-1.60.5-1.3
Bone: post-yield work0.20.20.3-0.40.4-0.5
Bone: stiffness0.40.60.90.6-1.00.7
Bone: tissue strength0.30.30.70.30.9-0.0
Bone: trabecular number0.50.71.21.1-0.10.9
Bone: trabecular spacing1.01.21.5-1.20.9-1.2
Bone: trabecular thickness0.30.40.50.6-0.60.7
Bone: trabecular tissue density2.43.45.11.4-2.31.8
Breakpoint value in progressive ratio session0.10.10.10.30.10.3
Distance traveled before self-admin1.41.52.21.1-1.01.5
Distance traveled after self-admin0.30.30.60.60.80.2
Delta time in closed arm before/after self-admin3.23.15.30.9-2.31.8
Delta time in open arm before/after self-admin3.83.64.8-2.01.5-2.2
Diff in mean of infusions in LGA sessions3.84.35.22.1-1.82.3
Extinction: sum of active levers before priming0.10.10.20.2-0.40.4
Active lever presses in extinction session 64.94.77.4-1.82.7-1.9
Delta distance traveled before/after self-admin1.81.92.7-0.91.5-1.6
Delta ambulatory time before/after self-admin2.12.33.1-0.91.8-1.7
Time in closed arm before self-admin3.84.47.1-1.42.7-2.1
Time in closed arm after self-admin0.40.40.80.90.20.7
Time in open arm before self-admin5.15.47.42.0-2.22.7
Time in open arm after self-admin0.20.20.4-0.6-0.6-0.1
Sum of active levers in priming session hrs 5-60.10.10.2-0.10.40.3
Time to tail flick, vehicle, before self-admin0.10.10.20.00.50.1
Time to tail flick, vehicle, after self-admin3.03.24.8-1.41.7-2.2
Time to tail flick, test, before self-admin0.10.10.2-0.4-0.3-0.4
Time to tail flick, test, after self-admin0.20.20.3-0.5-0.4-0.2
Delta time to tail flick, vehicle, before/after SA1.71.73.1-1.00.9-1.8
Delta time to tail flick, test, before/after SA0.30.20.30.4-0.40.6
Ambulatory time before self-admin1.31.31.91.2-0.81.4
Ambulatory time after self-admin0.50.61.50.41.2-0.2
Total heroin consumption0.50.60.7-0.70.8-0.8
Area under the delay curve0.10.10.1-0.1-0.30.4
Delay disc. indifference point, 0s delay0.70.71.2-1.10.5-0.9
Delay disc. indifference point, 16s delay0.00.00.10.10.10.2
Delay disc. indifference point, 2s delay0.40.40.9-1.0-0.1-0.5
Delay disc. indifference point, 24s delay0.80.81.30.9-0.61.1
Delay disc. indifference point, 4s delay0.40.41.0-1.0-0.2-0.5
Delay disc. indifference point, 8s delay0.10.10.2-0.40.10.0
Delay discount exponential model param0.10.10.20.00.4-0.4
Delay discount hyperbolic model param0.10.10.10.20.4-0.3
Fecal boli incidents, locomotor time 11.51.62.4-1.01.5-1.2
Change in fecal boli incidents, locomotor task1.61.51.81.4-1.11.2
Time >=10cm from walls, locomotor time 12.82.82.9-1.61.7-1.7
Bouts of movement, locomotor time 10.40.40.5-0.60.7-0.6
Total resting periods, locomotor time 10.30.40.8-0.30.9-0.5
Rest time, locomotor task time 10.10.10.20.20.4-0.1
Distance moved, locomotor task time 10.20.20.4-0.4-0.60.1
Vertical activity count, locomotor time 10.20.20.3-0.5-0.4-0.3
Time >=10cm from walls, locomotor time 21.41.52.0-1.40.8-1.4
Bouts of movement, locomotor time 20.10.10.2-0.4-0.4-0.1
Total resting periods, locomotor time 20.20.20.4-0.0-0.70.2
Rest time, locomotor task time 23.33.95.12.3-1.52.0
Distance moved, locomotor task time 23.23.75.7-2.41.2-2.0
Vertical activity count, locomotor time 20.91.01.9-1.40.1-1.0
Weight adjusted by age0.20.20.5-0.7-0.3-0.4
Seeking ratio, delayed vs. immediate footshock1.21.32.51.6-0.71.0
Locomotion in novel chamber1.72.14.0-1.22.0-1.0
Locomotion in novel chamber post-restriction3.03.54.1-1.62.0-2.0
Progressive ratio0.10.10.3-0.20.5-0.2
Food seeking constrained by brief footshock0.50.61.4-1.20.1-0.7
Seeking ratio, punishment vs. effort0.30.30.6-0.8-0.5-0.4
Run reversals in cocaine runway, females2.82.86.50.7-2.51.2
Run reversals in cocaine runway, males0.10.10.10.4-0.20.1
Latency to leave start box in cocaine runway4.14.55.41.9-2.32.1
Latency to leave start box in cocaine runway, F3.94.36.31.6-2.52.0
Latency to leave start box in cocaine runway, M0.20.20.40.7-0.00.5
Cd content in liver1.01.11.60.8-1.21.0
Co content in liver1.01.11.9-1.40.3-1.2
Cu content in liver0.40.50.9-1.0-0.2-0.7
Fe content in liver0.10.10.10.2-0.30.2
K content in liver0.40.40.60.5-0.80.6
Mg content in liver0.10.10.2-0.40.1-0.4
Mn content in liver0.91.01.81.3-0.11.1
Na content in liver0.30.30.4-0.50.5-0.6
Rb content in liver0.70.91.3-1.10.6-1.0
Se content in liver3.34.05.32.3-1.42.2
Sr content in liver0.10.10.3-0.10.5-0.2
Zn content in liver5.05.56.8-2.61.7-2.6