Tcirg1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000017220 0.16 0.1 8.4e-04 0.01 0.01 0.03 0.01 4.6e-02 6.8e-03 6.5e-04 5.2e-02
2 BLA gene expression ENSRNOG00000017220 0.07 0.06 6.5e-03 0.05 0.03 0.04 0.04 1.5e-03 6.3e-03 4.6e-03 4.5e-03
3 LHb isoform ratio ENSRNOT00000089107 0.26 0.16 1.0e-03 0.15 0.13 0.04 0.12 2.0e-04 5.1e-04 4.4e-02 1.0e-03
4 Liver gene expression ENSRNOG00000017220 0.31 0.13 0.0e+00 0.16 0.16 0.16 0.17 6.8e-18 2.8e-17 2.2e-17 4.3e-18

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.96.010.90.22.63.3-2.6
BMI without tail1.12.44.20.31.62.1-1.7
Body weight2.510.817.32.63.82.2-4.2
Epididymis fat weight2.55.88.5-2.3-2.9-1.02.9
Glucose1.42.23.1-1.8-1.40.91.6
Heart weight1.11.62.6-1.2-1.6-0.31.5
Left kidney weight0.82.44.0-0.7-2.0-1.61.7
Right kidney weight0.82.24.1-0.2-1.7-2.01.4
Tail length0.82.55.02.21.3-0.9-1.6
Length with tail2.17.712.03.52.9-0.1-3.3
Length without tail1.94.26.32.32.30.5-2.5
Liver weight, left0.10.10.2-0.2-0.4-0.20.5
Liver weight, right0.20.30.9-0.0-0.4-0.90.3
Parametrial fat weight1.63.14.6-2.1-1.80.32.1
Retroperitoneal fat weight3.912.819.9-3.1-4.5-1.54.4
Intraocular pressure0.50.72.20.1-0.5-1.50.7
Extensor digitorum longus weight5.321.132.24.55.71.2-5.5
Soleus weight3.08.813.2-1.6-3.5-2.73.6
Tibialis anterior weight7.325.335.05.65.9-0.6-5.8
Tibia length0.31.01.71.30.4-1.3-0.6
Number of licking bursts0.10.10.2-0.50.20.4-0.0
Food consumed during 24 hour testing period0.30.40.5-0.4-0.6-0.70.6
Times rat made contact with spout0.40.51.3-0.30.51.1-0.6
Mean time between licks in bursts0.81.11.51.21.10.3-1.2
Mean num. licks in bursts0.00.10.10.1-0.20.4-0.1
Std. dev. time between licks in bursts0.80.91.21.11.0-1.0-0.7
Water consumed over 24 hours0.50.60.90.30.80.9-0.9
Indifference point 0 sec0.30.51.5-0.2-1.2-0.10.8
Indifference point AUC1.21.52.61.11.6-0.2-1.4
Indifference point function ln k3.65.07.6-2.0-2.7-1.12.8
Indifference point function log k3.65.07.6-2.0-2.7-1.12.8
Delay discounting total patch changes 0 sec0.20.30.80.4-0.9-0.50.4
Delay discounting total patch changes 12 sec1.92.53.91.71.70.5-2.0
Delay discounting total patch changes 18 sec0.20.30.40.50.60.5-0.6
Delay discounting total patch changes 24 sec1.01.22.31.51.0-0.3-1.2
Delay discounting total patch changes 6 sec0.50.81.20.60.61.1-1.1
Delay discounting time to switch 0 sec1.72.66.20.11.52.5-1.5
Delay discounting water rate 0 sec3.86.010.4-0.4-2.6-3.22.6
Delay discounting water rate 12 sec5.27.811.1-1.1-3.0-3.33.2
Delay discounting water rate 18 sec1.31.72.6-0.9-1.4-1.21.6
Delay discounting water rate 24 sec2.23.05.9-0.3-1.7-2.41.7
Delay discounting water rate 6 sec1.42.04.70.1-1.2-2.21.4
Locomotor activity0.81.31.8-0.7-1.4-1.11.3
Locomotor testing distance1.01.62.6-0.8-1.6-1.21.4
Locomotor testing rearing0.91.42.2-1.5-1.20.11.3
Light reinforcement 10.40.81.0-0.5-1.0-0.91.0
Light reinforcement 22.02.63.8-1.2-1.9-1.21.9
Reaction time number correct0.30.50.80.70.9-0.5-0.6
Reaction time mean minus median1.21.62.50.41.61.1-1.6
Reaction time mean minus median AUC1.01.22.40.51.50.4-1.5
Reaction time num false alarms0.30.41.00.80.1-1.0-0.2
Reaction time num false alarms AUC0.60.81.41.20.8-0.5-0.9
Reaction time trials correct on left0.30.50.80.70.9-0.5-0.6
Reaction time trials on left0.40.61.00.81.0-0.5-0.7
Reaction time mean0.10.10.3-0.40.10.50.0
Reaction time mean AUC0.10.20.3-0.5-0.10.60.2
Median of all reaction times0.20.20.3-0.6-0.20.60.4
Reaction time omissions1.21.62.90.91.70.5-1.6
Reaction time false alarm rate0.20.30.60.80.1-0.5-0.4
Reaction time premature initiation rate1.92.54.01.41.90.8-2.0
Reaction time premature initiations2.94.16.61.92.60.4-2.5
Std. dev. reaction times0.30.40.6-0.00.70.7-0.7
Reaction time trials completed0.40.61.00.81.0-0.5-0.7
Reaction time trials AUC0.30.40.70.70.8-0.4-0.6
Social response proportion0.50.61.20.10.81.1-0.7
Social responses0.30.30.60.60.8-0.2-0.6
Social time0.40.50.80.40.90.4-0.9
Conditioned locomotion2.32.73.51.91.8-1.0-1.7
Cocaine response after cond. corrected0.10.10.2-0.4-0.50.10.4
Cocaine response after cond. not corrected0.30.30.6-0.8-0.40.50.4
Cocaine response before conditioning0.10.20.3-0.40.40.5-0.2
Saline control response2.22.94.21.52.10.9-2.1
Condit. Reinf. active minus inactive responses1.51.84.1-2.0-1.11.01.0
Condit. Reinf. active-inactive response ratio2.42.54.6-2.1-1.70.31.6
Condit. Reinf. active responses0.91.32.5-1.6-0.41.60.3
Condit. Reinf. inactive responses0.81.02.20.11.01.5-1.0
Condit. Reinf. lever presses0.71.02.1-0.50.91.4-0.8
Condit. Reinf. lever reinforcers received0.91.23.0-1.4-0.11.70.0
Pavlov. Cond. lever latency0.10.10.40.6-0.1-0.30.1
Pavlov. Cond. magazine entry latency2.22.64.00.11.82.0-1.8
Pavlov. Cond. change in total contacts0.40.61.5-0.70.41.2-0.4
Pavlov. Cond. index score0.70.91.5-0.31.11.2-0.9
Pavlov. Cond. latency score0.50.71.2-0.40.91.1-0.7
Pavlov. Cond. lever contacts0.00.00.1-0.30.2-0.2-0.1
Pavlov. Cond. magazine entry number2.93.65.1-0.3-2.2-2.32.1
Pavlov. Cond. intertrial magazine entries1.01.32.5-0.2-1.6-1.01.3
Pavlov. Cond. lever-magazine prob. diff.0.91.21.8-0.11.31.3-1.1
Pavlov. Cond. response bias0.40.60.8-0.30.90.9-0.8
Conditioned reinforcement - actives0.40.40.9-0.1-0.5-0.90.6
Conditioned reinforcement - inactives4.24.77.6-1.7-2.6-1.22.7
Conditioned locomotion6.98.312.0-1.7-3.4-2.63.5
Intermittent access intake day 1-15 change1.41.42.1-0.6-1.4-1.11.4
Intermittent access intake escalation1.31.32.1-0.8-1.3-0.81.5
Intermittent access intake escalation 20.60.61.0-0.4-0.8-0.81.0
Intermitt. access day 1 inactive lever presses1.21.32.1-1.0-1.4-0.41.4
Intermitt. access day 15 inactive lever presses1.41.62.7-1.1-1.7-0.11.5
Intermitt. access escalation Index2.01.82.9-0.9-1.5-1.11.7
Intermittent access day 1 total infusions2.93.34.6-2.2-2.01.31.8
Intermittent access day 15 total infusions5.56.29.9-2.4-3.2-0.43.0
Intermittent access terminal intake (last 3 days)3.74.16.7-2.0-2.60.12.4
Intermittent access total infusions2.32.63.9-1.7-2.00.51.8
Intermittent access day 1 locomotion1.41.42.1-1.4-1.11.20.9
Intermittent access day 15 total locomotion3.43.65.6-1.9-2.2-0.42.4
Intermittent access total locomotion4.24.76.6-2.5-2.40.52.6
Intermittent access standard deviation0.60.61.2-0.4-1.1-0.61.0
Cocaine induced anxiety0.00.00.0-0.1-0.1-0.10.2
Post-drug Anxiety0.80.91.31.11.0-0.2-1.1
Baseline Anxiety1.51.62.41.41.5-0.0-1.5
Lifetime Intake1.92.13.3-1.5-1.80.51.6
Incentive Sensitization - Responses0.20.20.4-0.6-0.5-0.00.6
Incentive Sensitization - Breakpoint0.40.40.7-0.7-0.7-0.20.8
Progressive ratio test 1 active lever presses1.11.22.1-0.7-1.4-0.71.2
Progressive ratio test 1 breakpoint1.01.12.0-0.6-1.4-0.81.1
Progressive ratio test 1 inactive lever presses0.30.30.5-0.4-0.7-0.20.7
Progressive ratio test 2 active lever presses2.22.33.7-1.3-1.9-0.71.9
Progressive ratio test 2 breakpoint2.83.14.7-1.2-2.2-1.22.1
Progressive ratio test 2 inactive lever presses5.36.19.5-2.3-3.1-0.63.1
Total sessions with >9 infusions0.40.50.8-0.7-0.90.10.8
Short access day 1 total inactive lever presses1.92.13.7-1.3-1.9-0.41.7
Short access day 10 total inactive lever presses0.91.01.6-1.0-1.2-0.21.2
Short access day 1 total infusions1.51.63.1-1.1-1.70.41.3
Short access day 10 total infusions1.31.52.8-1.4-0.91.70.6
Short access total infusions0.60.60.8-0.8-0.90.90.6
Short access day 1 locomotion1.21.31.8-1.3-1.40.51.2
Short access day 10 total locomotion0.50.60.9-0.9-0.70.60.7
Short access total locomotion0.50.50.7-0.8-0.70.60.5
Compulsive drug intake2.92.94.41.91.9-0.1-2.1
One hour access (0.3 mA shock)5.46.310.8-2.0-3.3-1.03.1
One hour access (shock baseline)6.47.411.9-2.2-3.4-1.23.4
Number of responses in last shaping day0.40.40.5-0.3-0.7-0.60.7
Context. condit. distance diff. score0.80.91.5-0.9-1.2-0.11.2
Locomotion velocity, session 10.00.00.2-0.40.10.10.1
Locomotion distance, session 11.01.33.1-1.00.81.7-0.5
Locomotion velocity, session 21.82.13.31.31.80.6-1.8
Locomotion distance, session 20.81.22.0-0.31.41.2-1.1
Locomotion velocity, session 30.80.92.4-1.1-0.21.5-0.0
Locomotion distance, session 30.00.00.1-0.20.00.40.0
Stereotopy head waving bouts, day 30.60.71.5-0.8-0.71.20.5
Stereotopy head waving duration, day 30.81.01.4-1.1-1.20.61.0
Locomotion velocity, session 70.40.51.3-0.80.01.20.0
Locomotion distance, session 70.20.30.7-0.00.80.6-0.4
Stereotopy head waving bouts, day 70.80.91.1-1.1-1.01.00.6
Stereotopy head waving duration, day 70.91.13.4-0.20.41.8-0.8
Locomotion velocity, session 81.01.21.90.91.30.6-1.4
Locomotion distance, session 80.40.61.5-1.2-0.30.50.7
Degree of sensitization distance0.30.30.5-0.10.70.7-0.4
Degree of sensitization stereotypy0.30.41.2-0.20.11.1-0.4
Condit. Reinf. active minus inactive responses0.20.20.6-0.50.10.8-0.2
Condit. Reinf. active-inactive response ratio0.20.20.4-0.6-0.30.50.1
Condit. Reinf. active responses0.00.00.1-0.2-0.00.2-0.1
Condit. Reinf. inactive responses0.00.00.10.1-0.2-0.30.2
Incentive salience index mean0.20.20.4-0.40.50.7-0.3
Condit. Reinf. lever presses0.10.10.4-0.00.6-0.2-0.1
Time in familiar zone, hab. session 10.50.50.8-0.9-0.70.30.8
Time in novel zone, hab. session 10.10.10.20.40.1-0.2-0.3
Total zone transitions, hab. session 10.40.61.5-0.01.20.7-0.7
Total locomotion distance, hab. session 10.40.61.3-1.1-0.40.00.9
Locomotion velocity, hab. session 10.20.20.7-0.80.00.00.5
Time in familiar zone, hab. session 20.50.60.91.00.7-0.5-0.8
Time in novel zone, hab. session 20.50.51.1-0.8-0.41.10.2
Total zone transitions, hab. session 22.33.07.6-1.11.52.8-1.0
Total locomotion distance, hab. session 20.81.02.1-1.40.31.50.2
Locomotion velocity, hab. session 20.81.12.5-1.6-0.01.30.5
Novel to familiar place preference ratio0.20.30.80.10.30.9-0.4
Novelty place preference0.20.20.7-0.1-0.10.8-0.1
Time in novel zone, NPP test0.20.20.7-0.1-0.10.8-0.1
Total zone transitions, NPP test1.11.62.8-0.41.71.6-1.0
Total locomotion distance, NPP test0.30.41.1-1.10.30.70.3
Locomotion velocity, NPP test0.20.30.9-0.90.30.50.3
Pavlov. Cond. lever latency0.20.30.8-0.0-0.9-0.50.4
Pavlov. Cond. magazine entry latency0.50.71.6-0.9-0.31.30.3
Pavlov. Cond. change in total contacts0.50.61.2-1.1-0.50.50.8
Pavlov. Cond. index score0.10.10.2-0.50.00.10.3
Pavlov. Cond. latency score0.10.10.2-0.50.10.30.2
Pavlov. Cond. lever contacts0.10.10.3-0.20.60.3-0.1
Pavlov. Cond. magazine entry number0.00.10.20.20.10.2-0.4
Pavlov. Cond. intertrial magazine entries0.40.41.20.4-0.6-1.10.3
Pavlov. Cond. lever-magazine prob. diff.0.00.10.2-0.40.20.20.2
Pavlov. Cond. response bias0.00.10.1-0.30.00.10.3
Bone: apparent density1.32.16.6-1.20.32.6-0.4
Bone surface2.13.88.7-0.41.83.0-1.7
Bone volume1.11.85.6-0.90.62.4-0.6
Bone: connectivity density2.33.59.0-0.41.63.0-1.6
Bone: cortical apparent density0.70.91.51.01.2-0.0-1.0
Bone: cortical area0.40.60.91.00.8-0.5-0.8
Bone: cortical porosity0.10.10.1-0.2-0.30.30.1
Bone: cortical porosity0.20.20.30.50.30.3-0.6
Bone: cortical thickness3.86.28.12.92.8-0.9-2.8
Bone: cortical thickness2.02.33.71.61.9-0.2-1.7
Bone: cortical tissue density0.81.11.71.11.3-0.1-1.1
Bone: elastic displacement1.21.34.30.9-0.3-2.10.2
Bone: elastic work1.41.82.81.71.3-0.8-1.5
Bone: endosteal estimation1.53.14.3-2.1-1.90.82.0
Bone: endosteal perimeter3.26.59.1-3.0-2.81.12.8
Bone: final force1.32.13.30.91.81.1-1.7
Bone: final moment1.11.82.70.91.71.0-1.6
Bone: marrow area1.53.14.3-2.1-1.90.82.0
Bone: maximum diameter0.10.20.3-0.2-0.5-0.50.5
Bone: maximum force1.52.65.7-0.01.52.4-1.5
Bone: maximum moment1.22.24.70.01.42.2-1.4
Bone: minimum diameter1.62.94.8-2.2-1.61.41.5
Bone: periosteal estimation0.10.30.4-0.5-0.70.10.6
Bone: periosteal perimeter0.20.40.5-0.7-0.60.60.6
Bone: post-yield work3.75.111.3-2.8-0.83.40.8
Bone: stiffness1.32.05.4-0.21.22.3-1.1
Bone: tissue strength0.40.40.9-1.0-0.40.30.5
Bone: trabecular number1.11.75.5-1.00.42.3-0.5
Bone: trabecular spacing0.40.51.50.6-0.1-1.20.2
Bone: trabecular thickness1.31.62.5-1.6-1.11.30.9
Bone: trabecular tissue density3.75.28.4-1.2-2.4-2.32.9
Breakpoint value in progressive ratio session1.71.93.10.91.80.9-1.6
Distance traveled before self-admin0.10.10.20.20.40.4-0.3
Distance traveled after self-admin0.00.00.1-0.1-0.00.30.0
Delta time in closed arm before/after self-admin0.70.71.10.81.0-0.3-1.0
Delta time in open arm before/after self-admin0.10.10.2-0.3-0.30.10.4
Diff in mean of infusions in LGA sessions0.40.40.80.60.9-0.0-0.7
Extinction: sum of active levers before priming2.92.94.61.02.11.5-1.9
Active lever presses in extinction session 61.21.21.71.31.2-0.6-1.1
Delta distance traveled before/after self-admin0.00.00.1-0.3-0.1-0.10.1
Delta ambulatory time before/after self-admin0.00.00.00.10.1-0.1-0.2
Time in closed arm before self-admin0.10.10.3-0.3-0.50.30.4
Time in closed arm after self-admin0.10.10.10.40.3-0.3-0.3
Time in open arm before self-admin0.30.30.40.60.6-0.1-0.6
Time in open arm after self-admin0.00.00.10.30.1-0.2-0.1
Sum of active levers in priming session hrs 5-61.21.23.01.20.4-1.7-0.3
Time to tail flick, vehicle, before self-admin1.01.03.4-0.40.41.8-0.6
Time to tail flick, vehicle, after self-admin2.22.43.41.21.81.2-1.8
Time to tail flick, test, before self-admin0.60.62.0-0.7-0.01.40.1
Time to tail flick, test, after self-admin0.10.10.20.40.10.0-0.4
Delta time to tail flick, vehicle, before/after SA1.01.01.71.01.30.1-1.1
Delta time to tail flick, test, before/after SA1.61.52.51.60.5-1.5-0.9
Ambulatory time before self-admin0.10.10.40.00.20.6-0.0
Ambulatory time after self-admin0.70.71.1-1.0-0.70.90.7
Total heroin consumption3.23.85.91.82.30.8-2.4
Area under the delay curve0.30.41.2-0.5-0.11.10.1
Delay disc. indifference point, 0s delay0.70.82.4-0.8-0.21.60.0
Delay disc. indifference point, 16s delay0.90.91.5-0.9-1.2-0.11.2
Delay disc. indifference point, 2s delay0.30.30.6-0.7-0.30.60.6
Delay disc. indifference point, 24s delay0.10.10.30.50.0-0.4-0.3
Delay disc. indifference point, 4s delay0.20.20.6-0.30.20.8-0.1
Delay disc. indifference point, 8s delay0.20.20.60.10.10.8-0.3
Delay discount exponential model param0.20.30.90.4-0.0-0.9-0.0
Delay discount hyperbolic model param0.30.30.90.4-0.1-1.0-0.0
Fecal boli incidents, locomotor time 10.10.10.1-0.4-0.2-0.10.4
Change in fecal boli incidents, locomotor task0.30.30.40.50.40.6-0.6
Time >=10cm from walls, locomotor time 11.61.61.7-1.3-1.31.21.2
Bouts of movement, locomotor time 10.80.81.71.31.0-0.4-0.7
Total resting periods, locomotor time 10.40.40.90.90.6-0.5-0.4
Rest time, locomotor task time 11.51.72.4-0.6-1.4-1.61.3
Distance moved, locomotor task time 10.40.51.6-0.30.31.3-0.4
Vertical activity count, locomotor time 10.60.71.0-0.8-1.00.31.0
Time >=10cm from walls, locomotor time 20.20.20.3-0.2-0.3-0.50.5
Bouts of movement, locomotor time 20.40.40.50.70.70.1-0.7
Total resting periods, locomotor time 20.10.10.20.40.40.2-0.4
Rest time, locomotor task time 21.72.03.2-1.5-1.80.21.6
Distance moved, locomotor task time 20.70.91.21.11.1-0.4-1.0
Vertical activity count, locomotor time 20.90.92.41.10.3-1.5-0.3
Weight adjusted by age1.31.53.10.91.80.4-1.4
Seeking ratio, delayed vs. immediate footshock0.30.41.2-0.50.01.1-0.3
Locomotion in novel chamber4.55.68.8-2.2-2.8-0.73.0
Locomotion in novel chamber post-restriction2.63.14.7-1.6-2.2-0.92.1
Progressive ratio2.52.97.5-0.31.42.7-1.4
Food seeking constrained by brief footshock0.30.40.60.50.70.4-0.8
Seeking ratio, punishment vs. effort1.51.84.90.4-1.0-2.21.0
Run reversals in cocaine runway, females1.41.43.00.11.31.7-1.1
Run reversals in cocaine runway, males0.40.40.80.70.3-0.9-0.4
Latency to leave start box in cocaine runway0.50.51.2-0.8-0.21.10.3
Latency to leave start box in cocaine runway, F0.30.31.0-0.6-0.01.00.1
Latency to leave start box in cocaine runway, M0.00.00.0-0.1-0.10.10.1
Cd content in liver1.31.42.1-0.8-1.4-1.01.5
Co content in liver0.40.51.60.1-0.3-1.30.4
Cu content in liver0.20.20.50.70.5-0.1-0.5
Fe content in liver0.00.00.10.20.30.2-0.2
K content in liver1.41.42.9-0.21.21.7-1.2
Mg content in liver1.41.53.7-1.4-0.01.90.0
Mn content in liver1.21.32.20.91.50.7-1.4
Na content in liver0.20.20.30.60.2-0.6-0.3
Rb content in liver2.12.75.3-2.3-1.51.21.3
Se content in liver0.30.40.7-0.6-0.50.80.4
Sr content in liver2.42.23.51.91.6-0.4-1.6
Zn content in liver0.70.81.30.71.10.2-1.1