Med4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000017170 0.03 0.02 1.0e-03 0.02 0.02 0.02 0.02 1.5e-03 1.9e-03 6.2e-03 3.8e-03
2 Brain gene expression ENSRNOG00000017170 0.08 0.04 1.0e-07 0.1 0.08 0.09 0.09 1.9e-09 7.2e-08 2.9e-08 2.4e-08
3 Liver alternative polyA ENSRNOT00000023195 0.04 0.03 7.3e-05 0.03 0.03 0.03 0.03 4.8e-04 3.7e-04 3.0e-04 3.5e-04
4 Liver gene expression ENSRNOG00000017170 0.07 0.05 6.9e-06 0.04 0.03 0.02 0.03 2.8e-05 2.0e-04 3.2e-03 2.5e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.10.20.4-0.50.4-0.60.1
BMI without tail0.40.72.70.41.60.4-0.0
Body weight0.62.66.61.41.0-2.61.0
Epididymis fat weight1.12.74.52.12.1-0.11.4
Glucose0.60.92.6-1.6-0.0-0.6-0.7
Heart weight0.50.72.10.5-0.11.5-0.7
Left kidney weight1.02.89.43.11.3-0.30.1
Right kidney weight2.05.620.44.51.40.6-0.2
Tail length0.72.25.62.41.7-0.2-0.3
Length with tail0.52.03.91.70.3-2.01.1
Length without tail0.81.73.1-0.1-1.7-1.80.9
Liver weight, left0.10.20.3-0.4-0.5-0.30.5
Liver weight, right0.50.82.1-0.9-0.1-1.5-0.2
Parametrial fat weight0.61.22.60.21.6-0.01.5
Retroperitoneal fat weight0.41.53.50.71.0-0.91.9
Intraocular pressure0.50.81.40.51.2-0.51.0
Extensor digitorum longus weight3.614.329.1-4.2-5.41.4-3.0
Soleus weight2.67.614.1-3.8-3.70.7-1.4
Tibialis anterior weight2.37.817.1-2.8-4.10.4-2.5
Tibia length4.011.428.75.43.0-2.61.0
Number of licking bursts1.31.63.50.11.2-1.91.2
Food consumed during 24 hour testing period0.60.81.80.9-0.30.6-1.3
Times rat made contact with spout1.92.14.30.92.1-1.70.8
Mean time between licks in bursts0.50.61.50.30.91.2-0.4
Mean num. licks in bursts0.10.10.30.20.30.2-0.6
Std. dev. time between licks in bursts2.02.34.92.20.81.8-0.7
Water consumed over 24 hours0.20.20.60.2-0.2-0.3-0.8
Indifference point 0 sec2.74.39.93.12.3-1.40.4
Indifference point AUC1.51.83.0-1.7-1.21.3-1.1
Indifference point function ln k1.52.14.02.01.2-1.41.1
Indifference point function log k1.52.14.02.01.2-1.41.1
Delay discounting total patch changes 0 sec2.64.28.83.02.3-1.60.6
Delay discounting total patch changes 12 sec0.50.71.51.20.8-0.5-0.6
Delay discounting total patch changes 18 sec0.91.22.30.21.5-1.30.8
Delay discounting total patch changes 24 sec0.81.02.01.41.0-0.9-0.3
Delay discounting total patch changes 6 sec1.62.43.71.01.9-1.51.6
Delay discounting time to switch 0 sec0.00.00.10.1-0.30.30.0
Delay discounting water rate 0 sec1.01.64.20.81.1-2.00.5
Delay discounting water rate 12 sec0.20.31.20.0-0.1-0.31.1
Delay discounting water rate 18 sec0.30.40.8-0.40.2-0.70.9
Delay discounting water rate 24 sec2.02.74.7-0.61.3-2.22.0
Delay discounting water rate 6 sec0.20.31.1-0.5-0.2-1.00.0
Locomotor activity2.53.98.41.0-2.90.3-2.5
Locomotor testing distance1.22.02.71.6-1.6-0.5-1.6
Locomotor testing rearing1.21.94.32.1-1.0-0.1-1.5
Light reinforcement 11.32.35.00.92.2-1.21.4
Light reinforcement 21.11.42.8-0.71.4-0.71.7
Reaction time number correct1.11.54.6-2.2-1.10.40.2
Reaction time mean minus median0.50.71.31.0-1.2-0.6-0.5
Reaction time mean minus median AUC0.30.40.50.7-0.7-0.4-0.5
Reaction time num false alarms0.50.71.60.4-0.31.0-1.3
Reaction time num false alarms AUC0.60.91.80.5-0.11.2-1.3
Reaction time trials correct on left1.11.54.6-2.2-1.10.40.2
Reaction time trials on left1.01.44.4-2.1-1.10.50.2
Reaction time mean0.81.11.41.0-1.20.9-1.2
Reaction time mean AUC1.01.32.00.9-1.41.0-1.3
Median of all reaction times0.91.21.80.9-0.91.3-1.1
Reaction time omissions0.30.41.01.00.40.30.4
Reaction time false alarm rate0.60.81.81.30.60.4-1.0
Reaction time premature initiation rate1.01.34.2-0.8-0.6-0.22.0
Reaction time premature initiations1.62.24.0-1.9-1.10.12.0
Std. dev. reaction times0.60.82.10.7-1.40.2-0.7
Reaction time trials completed1.01.44.4-2.1-1.10.50.2
Reaction time trials AUC1.11.64.6-2.2-1.20.50.1
Social response proportion1.92.13.5-1.9-1.21.70.9
Social responses0.81.13.5-0.3-0.41.90.8
Social time0.70.91.81.10.11.3-0.6
Conditioned locomotion0.20.20.5-0.50.00.00.7
Cocaine response after cond. corrected1.11.34.0-2.0-0.60.20.8
Cocaine response after cond. not corrected0.30.41.3-1.1-0.20.20.2
Cocaine response before conditioning1.62.05.22.31.3-0.5-0.9
Saline control response1.51.95.60.61.1-2.40.8
Condit. Reinf. active minus inactive responses0.30.40.90.60.5-0.11.0
Condit. Reinf. active-inactive response ratio0.10.10.20.10.30.5-0.1
Condit. Reinf. active responses0.40.50.80.90.8-0.30.7
Condit. Reinf. inactive responses1.01.21.41.11.1-1.20.9
Condit. Reinf. lever presses1.11.64.92.20.50.5-0.9
Condit. Reinf. lever reinforcers received0.40.61.21.11.0-0.30.5
Pavlov. Cond. lever latency0.81.12.3-1.50.3-0.61.3
Pavlov. Cond. magazine entry latency1.11.32.61.60.0-0.1-1.6
Pavlov. Cond. change in total contacts1.31.82.90.1-1.71.4-1.5
Pavlov. Cond. index score1.11.43.01.4-0.70.4-1.7
Pavlov. Cond. latency score1.21.52.71.6-0.70.5-1.6
Pavlov. Cond. lever contacts1.11.63.01.7-0.60.5-1.7
Pavlov. Cond. magazine entry number0.91.12.2-1.5-0.0-0.41.5
Pavlov. Cond. intertrial magazine entries2.02.56.01.42.4-1.01.2
Pavlov. Cond. lever-magazine prob. diff.1.11.43.11.3-0.80.7-1.8
Pavlov. Cond. response bias1.41.94.41.6-0.70.3-2.1
Conditioned reinforcement - actives0.40.41.3-1.1-0.20.20.5
Conditioned reinforcement - inactives1.01.22.31.51.1-0.90.5
Conditioned locomotion0.50.61.10.3-0.80.7-1.1
Intermittent access intake day 1-15 change3.03.03.81.22.0-1.71.9
Intermittent access intake escalation3.23.24.50.81.9-2.12.0
Intermittent access intake escalation 20.60.61.60.40.6-0.31.2
Intermitt. access day 1 inactive lever presses1.82.04.30.71.0-1.52.1
Intermitt. access day 15 inactive lever presses1.11.21.51.11.2-1.11.0
Intermitt. access escalation Index0.40.40.7-0.9-0.5-0.6-0.4
Intermittent access day 1 total infusions1.72.05.80.51.3-2.40.4
Intermittent access day 15 total infusions3.13.56.60.81.9-2.61.7
Intermittent access terminal intake (last 3 days)1.61.84.00.41.2-2.01.2
Intermittent access total infusions3.23.58.30.71.8-2.91.4
Intermittent access day 1 locomotion2.62.65.51.41.6-2.30.7
Intermittent access day 15 total locomotion1.11.22.30.41.5-1.21.0
Intermittent access total locomotion1.92.13.91.11.6-2.00.8
Intermittent access standard deviation2.02.15.80.10.8-2.41.4
Cocaine induced anxiety1.41.62.40.9-1.61.3-1.3
Post-drug Anxiety0.60.61.31.20.10.60.9
Baseline Anxiety2.12.23.70.61.9-1.51.6
Lifetime Intake2.32.66.90.61.4-2.61.0
Incentive Sensitization - Responses0.80.82.50.41.6-0.60.1
Incentive Sensitization - Breakpoint1.01.03.20.71.8-0.60.2
Progressive ratio test 1 active lever presses1.21.33.6-0.60.7-1.90.8
Progressive ratio test 1 breakpoint1.31.33.3-0.70.8-1.80.9
Progressive ratio test 1 inactive lever presses5.66.09.30.62.5-3.02.8
Progressive ratio test 2 active lever presses1.71.93.3-0.51.8-1.71.0
Progressive ratio test 2 breakpoint2.12.34.6-0.02.1-1.90.9
Progressive ratio test 2 inactive lever presses1.92.23.60.81.9-1.91.1
Total sessions with >9 infusions0.10.10.10.40.1-0.20.3
Short access day 1 total inactive lever presses4.44.911.21.32.5-3.30.7
Short access day 10 total inactive lever presses1.21.42.60.50.9-1.31.6
Short access day 1 total infusions0.40.51.6-0.2-0.0-1.30.4
Short access day 10 total infusions1.31.54.90.80.5-2.2-0.4
Short access total infusions1.61.85.10.71.1-2.30.7
Short access day 1 locomotion0.50.50.90.9-1.00.1-0.5
Short access day 10 total locomotion0.80.92.11.40.20.7-0.9
Short access total locomotion1.01.03.61.90.4-0.50.2
Compulsive drug intake0.80.81.90.80.6-1.4-0.2
One hour access (0.3 mA shock)1.82.17.00.11.0-2.60.7
One hour access (shock baseline)0.50.51.1-0.9-0.3-1.10.4
Number of responses in last shaping day0.20.20.5-0.3-0.20.4-0.7
Context. condit. distance diff. score1.51.82.9-0.91.7-1.11.6
Locomotion velocity, session 10.91.01.5-0.6-1.10.9-1.2
Locomotion distance, session 10.40.51.60.6-0.20.1-1.3
Locomotion velocity, session 20.30.40.80.5-0.20.6-0.9
Locomotion distance, session 21.01.44.90.8-0.4-0.1-2.2
Locomotion velocity, session 30.20.20.3-0.50.50.40.2
Locomotion distance, session 30.50.51.4-0.21.2-0.40.6
Stereotopy head waving bouts, day 30.70.81.3-0.8-1.21.20.0
Stereotopy head waving duration, day 30.70.92.1-0.6-1.40.7-0.8
Locomotion velocity, session 73.53.810.1-0.23.2-0.82.1
Locomotion distance, session 71.82.36.3-0.52.5-0.61.5
Stereotopy head waving bouts, day 70.30.40.80.5-0.20.9-0.7
Stereotopy head waving duration, day 70.20.30.60.0-0.80.8-0.1
Locomotion velocity, session 80.30.30.7-0.30.9-0.70.2
Locomotion distance, session 80.71.02.40.51.5-1.1-0.4
Degree of sensitization distance0.50.61.4-0.41.2-0.10.8
Degree of sensitization stereotypy0.10.10.30.50.2-0.10.1
Condit. Reinf. active minus inactive responses0.40.51.51.20.2-0.10.6
Condit. Reinf. active-inactive response ratio0.80.81.7-0.5-1.21.30.3
Condit. Reinf. active responses1.61.94.52.11.3-1.00.6
Condit. Reinf. inactive responses4.04.77.62.82.3-2.40.3
Incentive salience index mean2.12.57.62.81.2-0.60.7
Condit. Reinf. lever presses3.85.113.53.72.2-1.20.9
Time in familiar zone, hab. session 10.60.51.80.61.4-0.10.1
Time in novel zone, hab. session 12.52.55.9-2.4-1.90.40.0
Total zone transitions, hab. session 10.30.41.2-0.0-0.50.4-1.1
Total locomotion distance, hab. session 10.50.71.30.9-0.10.7-1.2
Locomotion velocity, hab. session 10.91.32.81.70.00.2-1.6
Time in familiar zone, hab. session 20.91.02.4-1.6-1.1-0.4-0.0
Time in novel zone, hab. session 20.20.20.40.40.60.4-0.3
Total zone transitions, hab. session 20.60.71.60.2-1.3-0.1-1.1
Total locomotion distance, hab. session 20.20.30.60.3-0.6-0.2-0.8
Locomotion velocity, hab. session 20.50.61.50.4-0.9-0.0-1.2
Novel to familiar place preference ratio0.70.71.20.91.1-0.60.5
Novelty place preference0.80.91.51.01.2-0.80.6
Time in novel zone, NPP test0.50.51.00.81.0-0.60.3
Total zone transitions, NPP test0.30.51.10.80.0-1.0-0.5
Total locomotion distance, NPP test0.71.02.01.40.8-1.1-0.3
Locomotion velocity, NPP test1.01.42.51.61.0-1.50.1
Pavlov. Cond. lever latency2.33.04.8-2.2-1.61.7-1.3
Pavlov. Cond. magazine entry latency0.91.11.31.01.2-1.01.1
Pavlov. Cond. change in total contacts1.31.42.21.30.9-1.50.8
Pavlov. Cond. index score2.33.04.12.01.7-1.81.3
Pavlov. Cond. latency score2.73.45.32.31.9-1.71.4
Pavlov. Cond. lever contacts2.63.04.92.21.6-1.81.3
Pavlov. Cond. magazine entry number0.30.40.8-0.5-0.60.9-0.4
Pavlov. Cond. intertrial magazine entries0.70.93.11.70.5-0.30.1
Pavlov. Cond. lever-magazine prob. diff.1.92.33.41.81.4-1.70.9
Pavlov. Cond. response bias0.81.01.31.10.8-1.20.9
Bone: apparent density0.30.51.40.60.5-0.2-1.2
Bone surface0.40.72.30.7-0.1-0.1-1.5
Bone volume0.50.93.30.40.1-0.3-1.8
Bone: connectivity density0.50.81.21.10.8-1.00.7
Bone: cortical apparent density1.01.33.5-1.4-0.1-0.11.9
Bone: cortical area0.30.51.80.0-0.40.4-1.3
Bone: cortical porosity1.01.03.11.80.1-0.7-0.8
Bone: cortical porosity0.91.02.51.6-0.1-0.4-1.1
Bone: cortical thickness0.20.30.60.30.5-0.80.3
Bone: cortical thickness0.20.30.4-0.60.7-0.30.5
Bone: cortical tissue density1.11.43.6-1.4-0.1-0.11.9
Bone: elastic displacement0.20.20.70.4-0.1-0.80.1
Bone: elastic work0.70.92.41.0-0.2-0.3-1.5
Bone: endosteal estimation1.12.45.30.1-0.81.9-2.3
Bone: endosteal perimeter1.42.95.20.2-1.22.3-2.2
Bone: final force0.40.61.31.11.10.0-0.3
Bone: final moment0.40.61.61.20.70.1-0.6
Bone: marrow area1.12.35.20.3-0.71.9-2.3
Bone: maximum diameter0.91.72.5-0.8-1.01.6-1.6
Bone: maximum force0.40.82.00.80.40.5-1.4
Bone: maximum moment0.61.02.51.00.20.6-1.6
Bone: minimum diameter0.81.43.90.7-0.70.8-2.0
Bone: periosteal estimation0.91.94.40.0-0.71.6-2.1
Bone: periosteal perimeter0.71.12.3-0.1-0.71.3-1.5
Bone: post-yield work0.20.31.0-0.11.00.2-0.2
Bone: stiffness0.30.50.91.00.60.4-0.7
Bone: tissue strength0.80.81.41.00.31.2-0.8
Bone: trabecular number0.40.61.11.01.1-0.4-0.4
Bone: trabecular spacing0.50.71.1-0.9-1.00.9-0.3
Bone: trabecular thickness0.91.12.20.81.1-1.5-0.5
Bone: trabecular tissue density0.71.01.7-1.0-1.30.8-0.9
Breakpoint value in progressive ratio session1.41.63.7-1.30.0-1.90.8
Distance traveled before self-admin2.02.23.9-0.6-2.01.3-1.6
Distance traveled after self-admin3.13.55.8-2.1-2.41.6-1.1
Delta time in closed arm before/after self-admin1.31.23.10.6-0.31.8-1.2
Delta time in open arm before/after self-admin0.20.10.50.20.7-0.1-0.0
Diff in mean of infusions in LGA sessions2.62.95.7-1.80.2-2.41.6
Extinction: sum of active levers before priming1.41.42.50.21.6-1.50.9
Active lever presses in extinction session 61.01.01.70.01.3-0.81.2
Delta distance traveled before/after self-admin1.11.24.1-2.0-0.70.10.5
Delta ambulatory time before/after self-admin0.70.72.2-1.5-0.6-0.30.5
Time in closed arm before self-admin0.20.20.50.1-0.70.6-0.3
Time in closed arm after self-admin0.30.40.8-0.1-0.90.7-0.4
Time in open arm before self-admin0.40.41.1-1.1-0.5-0.4-0.2
Time in open arm after self-admin0.10.10.3-0.30.30.3-0.5
Sum of active levers in priming session hrs 5-61.31.34.4-2.1-0.50.60.5
Time to tail flick, vehicle, before self-admin4.54.58.11.12.3-2.81.9
Time to tail flick, vehicle, after self-admin2.22.43.3-1.8-0.1-1.81.7
Time to tail flick, test, before self-admin0.70.71.51.00.40.1-1.2
Time to tail flick, test, after self-admin1.11.11.81.01.3-0.51.2
Delta time to tail flick, vehicle, before/after SA1.11.13.1-1.8-0.8-0.40.7
Delta time to tail flick, test, before/after SA0.50.51.5-0.30.50.21.2
Ambulatory time before self-admin0.60.71.4-0.4-1.00.1-1.2
Ambulatory time after self-admin2.52.85.9-1.8-2.40.8-1.2
Total heroin consumption0.60.82.1-0.9-0.4-1.4-0.1
Area under the delay curve0.50.61.60.7-0.3-0.2-1.3
Delay disc. indifference point, 0s delay0.91.01.70.8-0.81.3-0.9
Delay disc. indifference point, 16s delay0.40.40.80.2-0.5-0.8-0.9
Delay disc. indifference point, 2s delay3.53.96.9-0.2-2.02.6-2.1
Delay disc. indifference point, 24s delay0.20.20.5-0.2-0.40.1-0.7
Delay disc. indifference point, 4s delay1.01.01.4-0.2-1.11.1-1.2
Delay disc. indifference point, 8s delay0.70.81.80.90.7-1.3-0.2
Delay discount exponential model param0.60.72.0-0.70.4-0.01.4
Delay discount hyperbolic model param0.91.02.8-0.50.8-0.51.7
Fecal boli incidents, locomotor time 11.61.75.70.1-0.1-2.4-1.1
Change in fecal boli incidents, locomotor task1.41.44.2-0.5-0.72.00.8
Time >=10cm from walls, locomotor time 10.50.51.61.30.4-0.60.1
Bouts of movement, locomotor time 10.70.81.5-1.2-0.8-0.70.6
Total resting periods, locomotor time 10.80.92.0-1.4-1.0-0.50.5
Rest time, locomotor task time 11.31.42.1-1.3-1.40.3-1.3
Distance moved, locomotor task time 11.01.12.31.01.10.21.5
Vertical activity count, locomotor time 10.20.20.90.0-1.00.10.1
Time >=10cm from walls, locomotor time 21.01.02.4-0.6-1.50.8-0.8
Bouts of movement, locomotor time 21.01.12.9-1.7-0.5-1.10.4
Total resting periods, locomotor time 21.21.32.6-1.6-0.4-1.50.3
Rest time, locomotor task time 20.91.12.4-1.20.3-1.6-0.5
Distance moved, locomotor task time 20.60.71.91.40.40.20.7
Vertical activity count, locomotor time 20.80.92.3-0.4-1.50.6-1.0
Weight adjusted by age2.02.25.3-0.0-1.82.3-0.6
Seeking ratio, delayed vs. immediate footshock0.81.02.40.8-0.21.50.9
Locomotion in novel chamber0.91.12.00.70.3-1.4-1.3
Locomotion in novel chamber post-restriction0.81.02.3-0.6-0.01.5-1.1
Progressive ratio1.11.32.6-1.30.3-1.60.8
Food seeking constrained by brief footshock4.55.514.8-3.8-1.6-1.51.6
Seeking ratio, punishment vs. effort0.91.22.7-0.6-1.21.6-0.2
Run reversals in cocaine runway, females0.20.20.40.20.60.4-0.6
Run reversals in cocaine runway, males1.11.03.2-0.1-0.2-1.8-0.9
Latency to leave start box in cocaine runway1.11.22.1-1.0-1.51.1-0.6
Latency to leave start box in cocaine runway, F0.30.30.7-0.7-0.80.3-0.1
Latency to leave start box in cocaine runway, M0.30.20.4-0.1-0.60.5-0.6
Cd content in liver0.40.41.0-0.10.7-0.41.0
Co content in liver2.93.49.3-3.1-1.70.9-0.9
Cu content in liver0.70.92.1-1.4-1.20.4-0.1
Fe content in liver0.20.30.50.70.60.20.4
K content in liver0.50.51.00.61.0-0.60.5
Mg content in liver0.10.10.2-0.30.20.0-0.4
Mn content in liver0.30.30.7-0.4-0.10.7-0.8
Na content in liver2.22.44.51.7-1.10.9-2.1
Rb content in liver0.80.92.7-0.10.7-0.71.6
Se content in liver1.31.52.50.5-1.61.2-1.4
Sr content in liver0.80.71.5-0.1-0.51.2-1.0
Zn content in liver0.70.71.50.7-0.90.1-1.2