Ca9

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000017073 0.26 0.12 0.0e+00 0.17 0.17 0.17 0.17 2.3e-18 2.0e-18 2.2e-18 3.3e-18
2 Brain gene expression ENSRNOG00000017073 0.11 0.06 4.5e-13 0.11 0.14 0.14 0.14 1.2e-10 6.7e-13 7.2e-13 7.2e-13
3 Liver gene expression ENSRNOG00000017073 0.14 0.07 5.8e-11 0.05 0.09 0.09 0.09 2.1e-06 4.1e-10 4.5e-10 4.2e-10
4 NAcc gene expression ENSRNOG00000017073 0.08 0.05 6.5e-07 0.07 0.09 0.08 0.08 3.0e-06 6.7e-07 2.6e-06 1.8e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.65.110.40.3-3.2-1.1-2.9
BMI without tail4.39.014.8-1.0-3.7-2.5-3.8
Body weight2.711.318.2-1.0-4.2-2.8-4.3
Epididymis fat weight0.30.81.3-0.5-0.9-0.9-1.1
Glucose1.01.52.3-0.6-1.5-1.1-1.5
Heart weight0.60.91.2-0.6-1.0-1.0-1.1
Left kidney weight0.72.13.0-1.4-1.2-1.7-1.4
Right kidney weight0.10.20.5-0.70.0-0.6-0.2
Tail length1.95.69.3-1.1-2.7-2.2-3.0
Length with tail0.93.24.1-1.4-1.6-2.0-2.0
Length without tail0.20.40.8-0.40.90.10.8
Liver weight, left0.10.20.40.2-0.5-0.1-0.7
Liver weight, right0.10.10.3-0.20.5-0.00.3
Parametrial fat weight0.20.40.6-0.6-0.4-0.7-0.6
Retroperitoneal fat weight0.20.50.70.70.60.80.7
Intraocular pressure2.73.84.6-1.5-1.9-2.1-2.2
Extensor digitorum longus weight3.413.822.4-1.2-4.6-3.1-4.7
Soleus weight0.82.45.7-2.40.7-1.8-0.1
Tibialis anterior weight5.518.929.2-2.1-5.0-4.1-5.4
Tibia length0.30.71.6-1.30.6-1.0-0.0
Number of licking bursts2.73.26.30.2-2.5-0.9-2.4
Food consumed during 24 hour testing period0.60.81.1-0.6-0.9-0.9-1.1
Times rat made contact with spout0.30.30.60.5-0.70.1-0.6
Mean time between licks in bursts0.81.11.40.81.21.11.1
Mean num. licks in bursts1.51.83.10.31.71.01.8
Std. dev. time between licks in bursts0.40.50.70.40.80.70.8
Water consumed over 24 hours0.50.61.2-0.1-1.1-0.5-1.0
Indifference point 0 sec3.35.310.0-3.2-0.8-3.0-1.2
Indifference point AUC6.37.412.0-0.9-3.4-2.3-3.5
Indifference point function ln k1.82.54.40.22.11.12.1
Indifference point function log k1.82.54.40.22.11.12.1
Delay discounting total patch changes 0 sec3.55.79.4-3.0-1.2-3.1-1.6
Delay discounting total patch changes 12 sec2.33.04.6-0.8-2.1-1.6-2.1
Delay discounting total patch changes 18 sec0.91.21.5-0.9-1.1-1.2-1.2
Delay discounting total patch changes 24 sec3.34.25.0-1.5-2.1-2.2-2.2
Delay discounting total patch changes 6 sec4.67.09.5-2.4-2.4-3.1-2.6
Delay discounting time to switch 0 sec3.55.36.71.72.42.52.6
Delay discounting water rate 0 sec3.45.37.3-2.2-2.1-2.7-2.3
Delay discounting water rate 12 sec0.30.40.9-0.9-0.1-0.8-0.3
Delay discounting water rate 18 sec0.30.40.90.0-1.0-0.4-0.8
Delay discounting water rate 24 sec0.30.41.01.0-0.30.80.0
Delay discounting water rate 6 sec0.50.71.1-0.5-0.9-0.8-1.0
Locomotor activity0.00.00.00.0-0.0-0.0-0.0
Locomotor testing distance0.30.41.0-1.00.4-0.70.0
Locomotor testing rearing0.50.81.1-0.7-0.8-1.0-1.0
Light reinforcement 12.64.88.4-2.9-0.7-2.9-1.5
Light reinforcement 23.64.710.3-3.2-0.0-2.8-0.9
Reaction time number correct0.30.50.8-0.9-0.4-0.9-0.5
Reaction time mean minus median2.12.76.62.6-0.81.8-0.3
Reaction time mean minus median AUC1.31.73.51.9-1.31.0-0.9
Reaction time num false alarms0.20.30.70.8-0.20.60.0
Reaction time num false alarms AUC0.20.30.50.2-0.7-0.2-0.6
Reaction time trials correct on left0.30.50.8-0.9-0.4-0.9-0.5
Reaction time trials on left0.30.40.7-0.8-0.3-0.8-0.4
Reaction time mean3.54.87.82.61.32.81.7
Reaction time mean AUC3.95.28.32.71.42.91.8
Median of all reaction times3.95.37.02.02.12.62.3
Reaction time omissions1.52.02.70.91.61.51.7
Reaction time false alarm rate0.20.30.60.80.00.70.2
Reaction time premature initiation rate2.02.73.71.21.61.81.9
Reaction time premature initiations0.91.32.10.71.21.11.4
Std. dev. reaction times2.43.37.42.70.22.40.6
Reaction time trials completed0.30.40.7-0.8-0.3-0.8-0.4
Reaction time trials AUC0.20.30.6-0.8-0.3-0.8-0.4
Social response proportion3.33.64.71.61.82.22.0
Social responses0.30.30.70.2-0.8-0.2-0.8
Social time0.30.50.70.50.90.70.6
Conditioned locomotion0.80.92.2-1.50.1-1.2-0.1
Cocaine response after cond. corrected1.41.62.5-1.51.6-0.61.2
Cocaine response after cond. not corrected1.51.62.6-1.61.5-0.71.0
Cocaine response before conditioning0.40.40.80.2-0.9-0.2-0.9
Saline control response1.41.82.9-1.5-0.8-1.7-1.2
Condit. Reinf. active minus inactive responses0.40.51.10.1-1.0-0.4-1.0
Condit. Reinf. active-inactive response ratio0.10.10.30.4-0.50.1-0.3
Condit. Reinf. active responses1.52.13.7-0.2-1.9-1.0-1.9
Condit. Reinf. inactive responses1.62.04.00.4-2.0-0.6-1.9
Condit. Reinf. lever presses1.31.93.81.0-1.9-0.0-1.7
Condit. Reinf. lever reinforcers received1.72.44.3-0.1-2.1-1.0-2.0
Pavlov. Cond. lever latency1.52.14.1-1.12.0-0.01.8
Pavlov. Cond. magazine entry latency0.81.01.30.90.91.10.9
Pavlov. Cond. change in total contacts1.21.63.81.9-1.01.2-0.6
Pavlov. Cond. index score0.60.82.01.4-0.41.0-0.2
Pavlov. Cond. latency score0.70.92.21.5-0.61.0-0.3
Pavlov. Cond. lever contacts0.81.12.10.7-1.5-0.1-1.3
Pavlov. Cond. magazine entry number1.11.33.1-1.80.0-1.5-0.3
Pavlov. Cond. intertrial magazine entries0.60.70.9-0.6-0.9-0.9-0.9
Pavlov. Cond. lever-magazine prob. diff.0.70.92.41.5-0.41.1-0.1
Pavlov. Cond. response bias0.40.61.11.0-0.80.5-0.6
Conditioned reinforcement - actives0.20.20.4-0.0-0.6-0.3-0.4
Conditioned reinforcement - inactives0.00.00.1-0.30.2-0.20.2
Conditioned locomotion0.40.50.7-0.5-0.9-0.7-0.7
Intermittent access intake day 1-15 change0.80.81.71.3-0.90.7-0.5
Intermittent access intake escalation0.80.81.41.0-1.20.3-0.9
Intermittent access intake escalation 21.31.32.31.5-1.20.8-0.8
Intermitt. access day 1 inactive lever presses0.60.61.0-0.3-1.0-0.7-1.0
Intermitt. access day 15 inactive lever presses0.30.40.7-0.9-0.1-0.8-0.3
Intermitt. access escalation Index1.41.31.8-1.1-0.9-1.3-1.2
Intermittent access day 1 total infusions0.80.92.2-1.50.4-1.00.3
Intermittent access day 15 total infusions0.50.61.0-0.4-1.0-0.7-0.8
Intermittent access terminal intake (last 3 days)0.80.81.3-0.5-1.1-0.9-1.0
Intermittent access total infusions1.21.31.6-0.9-1.2-1.3-1.1
Intermittent access day 1 locomotion0.60.61.3-1.10.6-0.60.6
Intermittent access day 15 total locomotion0.20.30.5-0.50.5-0.10.7
Intermittent access total locomotion0.10.10.30.00.30.20.5
Intermittent access standard deviation0.20.20.50.4-0.70.0-0.5
Cocaine induced anxiety0.80.91.9-0.01.40.61.3
Post-drug Anxiety0.10.10.2-0.2-0.2-0.3-0.5
Baseline Anxiety0.91.01.80.8-1.40.0-1.2
Lifetime Intake2.12.33.7-1.8-1.1-1.9-1.2
Incentive Sensitization - Responses0.30.30.6-0.80.2-0.60.0
Incentive Sensitization - Breakpoint0.20.20.6-0.80.3-0.50.2
Progressive ratio test 1 active lever presses1.71.83.2-1.8-0.6-1.7-0.7
Progressive ratio test 1 breakpoint1.81.93.1-1.7-0.8-1.8-0.8
Progressive ratio test 1 inactive lever presses2.82.95.6-2.4-0.5-2.2-0.9
Progressive ratio test 2 active lever presses1.11.22.8-1.7-0.1-1.4-0.2
Progressive ratio test 2 breakpoint0.91.02.6-1.60.1-1.30.0
Progressive ratio test 2 inactive lever presses0.40.40.7-0.7-0.5-0.8-0.5
Total sessions with >9 infusions1.92.14.8-2.20.0-1.8-0.3
Short access day 1 total inactive lever presses2.73.03.9-1.5-1.6-2.0-1.7
Short access day 10 total inactive lever presses0.10.10.20.0-0.4-0.2-0.5
Short access day 1 total infusions3.53.76.1-2.4-1.0-2.5-1.3
Short access day 10 total infusions2.22.44.0-2.0-0.8-2.0-1.0
Short access total infusions2.22.55.1-2.3-0.4-2.1-0.7
Short access day 1 locomotion0.40.41.1-1.10.2-0.70.2
Short access day 10 total locomotion0.70.71.00.80.61.00.9
Short access total locomotion0.60.61.3-1.1-0.2-1.0-0.3
Compulsive drug intake0.30.30.4-0.2-0.6-0.5-0.7
One hour access (0.3 mA shock)1.21.42.1-1.3-0.9-1.5-1.0
One hour access (shock baseline)1.31.62.6-1.6-0.7-1.6-0.8
Number of responses in last shaping day2.62.65.9-2.4-0.0-2.1-0.5
Context. condit. distance diff. score0.10.10.10.30.20.40.3
Locomotion velocity, session 15.05.411.3-3.4-0.4-3.0-1.1
Locomotion distance, session 11.31.73.2-1.8-0.4-1.7-0.8
Locomotion velocity, session 21.41.73.50.4-1.9-0.5-1.7
Locomotion distance, session 21.62.43.1-1.2-1.4-1.7-1.8
Locomotion velocity, session 30.91.02.3-1.50.0-1.3-0.3
Locomotion distance, session 33.13.34.2-1.5-1.8-2.0-1.9
Stereotopy head waving bouts, day 30.70.82.0-1.40.6-1.00.2
Stereotopy head waving duration, day 30.30.40.7-0.80.8-0.30.6
Locomotion velocity, session 70.00.00.10.10.20.20.3
Locomotion distance, session 70.30.40.5-0.6-0.5-0.7-0.6
Stereotopy head waving bouts, day 72.32.63.4-1.0-1.8-1.6-1.9
Stereotopy head waving duration, day 70.60.71.0-0.8-0.7-1.0-0.9
Locomotion velocity, session 80.30.40.9-0.90.3-0.7-0.1
Locomotion distance, session 80.50.71.2-1.1-0.3-1.1-0.6
Degree of sensitization distance1.41.41.70.81.31.21.3
Degree of sensitization stereotypy1.31.42.0-0.6-1.4-1.1-1.4
Condit. Reinf. active minus inactive responses0.30.30.60.4-0.8-0.0-0.7
Condit. Reinf. active-inactive response ratio0.70.70.90.60.90.90.9
Condit. Reinf. active responses1.62.03.90.4-2.0-0.6-1.9
Condit. Reinf. inactive responses1.92.34.60.7-2.1-0.4-2.0
Incentive salience index mean2.93.56.1-0.3-2.5-1.4-2.5
Condit. Reinf. lever presses8.211.017.1-1.5-3.9-3.0-4.1
Time in familiar zone, hab. session 12.52.34.82.20.12.00.7
Time in novel zone, hab. session 12.02.03.2-1.71.8-0.81.1
Total zone transitions, hab. session 10.00.00.00.2-0.00.1-0.0
Total locomotion distance, hab. session 10.60.91.91.4-0.80.9-0.5
Locomotion velocity, hab. session 10.91.42.61.0-1.60.2-1.3
Time in familiar zone, hab. session 21.92.03.41.80.71.81.1
Time in novel zone, hab. session 21.41.42.6-1.61.3-0.80.9
Total zone transitions, hab. session 20.70.91.3-1.0-0.7-1.2-0.9
Total locomotion distance, hab. session 20.50.61.1-0.1-1.1-0.5-1.1
Locomotion velocity, hab. session 20.60.91.6-0.0-1.3-0.6-1.2
Novel to familiar place preference ratio2.02.14.3-1.12.1-0.01.7
Novelty place preference2.62.75.7-0.92.40.32.1
Time in novel zone, NPP test3.33.47.3-0.92.70.42.4
Total zone transitions, NPP test0.91.32.0-1.2-0.8-1.4-1.1
Total locomotion distance, NPP test2.12.93.6-1.4-1.7-1.9-1.9
Locomotion velocity, NPP test2.43.44.6-1.2-2.0-1.9-2.2
Pavlov. Cond. lever latency5.56.911.20.93.22.33.3
Pavlov. Cond. magazine entry latency0.20.20.50.3-0.7-0.0-0.6
Pavlov. Cond. change in total contacts2.02.13.4-0.5-1.8-1.3-1.9
Pavlov. Cond. index score1.92.44.40.0-2.1-0.9-2.1
Pavlov. Cond. latency score1.82.34.2-0.1-2.0-1.0-2.0
Pavlov. Cond. lever contacts4.04.77.7-0.6-2.8-1.7-2.8
Pavlov. Cond. magazine entry number0.40.51.0-0.31.00.20.9
Pavlov. Cond. intertrial magazine entries0.10.10.30.1-0.5-0.1-0.5
Pavlov. Cond. lever-magazine prob. diff.1.62.14.10.3-2.0-0.6-1.9
Pavlov. Cond. response bias2.02.54.3-0.2-2.1-1.1-2.1
Bone: apparent density0.81.32.70.1-1.6-0.6-1.5
Bone surface0.71.21.7-0.7-1.2-1.1-1.3
Bone volume0.50.91.5-0.3-1.2-0.8-1.2
Bone: connectivity density0.40.71.50.3-1.2-0.2-1.0
Bone: cortical apparent density1.11.43.01.70.11.50.5
Bone: cortical area1.21.93.80.6-1.9-0.3-1.8
Bone: cortical porosity0.30.30.50.20.70.50.7
Bone: cortical porosity0.00.00.0-0.1-0.1-0.1-0.0
Bone: cortical thickness0.61.01.61.2-1.30.4-0.9
Bone: cortical thickness0.30.40.60.70.40.80.5
Bone: cortical tissue density1.01.32.61.60.21.50.6
Bone: elastic displacement3.84.36.11.32.22.12.5
Bone: elastic work3.74.77.62.61.22.81.8
Bone: endosteal estimation0.92.02.7-1.1-1.3-1.6-1.6
Bone: endosteal perimeter1.32.73.6-1.5-1.4-1.9-1.7
Bone: final force0.61.01.90.2-1.3-0.5-1.4
Bone: final moment0.40.71.20.5-1.1-0.1-1.1
Bone: marrow area0.91.92.8-0.9-1.4-1.4-1.7
Bone: maximum diameter1.32.54.5-0.0-2.1-1.0-2.1
Bone: maximum force1.52.64.80.3-2.2-0.8-2.2
Bone: maximum moment1.11.93.60.5-1.9-0.4-1.9
Bone: minimum diameter0.10.10.20.50.10.40.2
Bone: periosteal estimation0.91.93.5-0.3-1.7-1.1-1.9
Bone: periosteal perimeter0.61.01.5-1.0-0.8-1.2-1.1
Bone: post-yield work1.21.62.3-0.9-1.2-1.4-1.5
Bone: stiffness1.93.05.70.3-2.3-0.8-2.4
Bone: tissue strength0.30.20.60.8-0.00.6-0.1
Bone: trabecular number0.71.22.40.5-1.6-0.3-1.4
Bone: trabecular spacing0.20.30.60.80.00.70.2
Bone: trabecular thickness0.10.10.10.20.20.30.3
Bone: trabecular tissue density1.21.63.2-0.1-1.6-0.8-1.8
Breakpoint value in progressive ratio session1.31.43.5-1.90.6-1.30.2
Distance traveled before self-admin4.24.56.1-1.5-2.1-2.3-2.5
Distance traveled after self-admin0.30.30.50.7-0.60.3-0.6
Delta time in closed arm before/after self-admin1.71.63.11.1-1.80.2-1.5
Delta time in open arm before/after self-admin0.40.40.6-0.70.8-0.30.6
Diff in mean of infusions in LGA sessions0.10.10.20.40.20.50.3
Extinction: sum of active levers before priming1.41.42.40.21.50.81.5
Active lever presses in extinction session 60.20.20.2-0.40.5-0.10.5
Delta distance traveled before/after self-admin1.21.31.71.01.11.31.1
Delta ambulatory time before/after self-admin2.42.73.21.31.71.81.7
Time in closed arm before self-admin1.41.63.00.11.70.81.7
Time in closed arm after self-admin0.30.30.60.80.20.80.4
Time in open arm before self-admin2.52.63.3-1.3-1.5-1.8-1.8
Time in open arm after self-admin1.92.13.1-1.4-1.2-1.8-1.4
Sum of active levers in priming session hrs 5-61.71.73.3-0.81.80.11.7
Time to tail flick, vehicle, before self-admin0.80.81.40.31.10.71.2
Time to tail flick, vehicle, after self-admin0.00.00.1-0.3-0.0-0.3-0.0
Time to tail flick, test, before self-admin0.20.20.40.2-0.7-0.1-0.6
Time to tail flick, test, after self-admin0.60.61.20.8-1.10.2-0.8
Delta time to tail flick, vehicle, before/after SA0.10.10.20.0-0.4-0.2-0.4
Delta time to tail flick, test, before/after SA0.10.10.10.30.10.30.2
Ambulatory time before self-admin4.14.35.7-1.8-1.9-2.4-2.2
Ambulatory time after self-admin0.10.10.1-0.1-0.2-0.2-0.3
Total heroin consumption0.70.81.7-1.30.7-0.80.5
Area under the delay curve0.30.40.6-0.70.7-0.30.6
Delay disc. indifference point, 0s delay0.80.91.8-0.51.30.11.2
Delay disc. indifference point, 16s delay1.21.22.2-1.51.1-0.80.8
Delay disc. indifference point, 2s delay0.10.10.30.5-0.20.4-0.0
Delay disc. indifference point, 24s delay0.10.10.20.20.50.30.4
Delay disc. indifference point, 4s delay0.00.00.1-0.00.30.10.3
Delay disc. indifference point, 8s delay0.00.00.0-0.1-0.1-0.1-0.1
Delay discount exponential model param0.30.30.40.7-0.60.3-0.5
Delay discount hyperbolic model param0.20.30.40.6-0.60.3-0.4
Fecal boli incidents, locomotor time 10.70.70.90.70.80.91.0
Change in fecal boli incidents, locomotor task1.91.82.6-1.4-0.9-1.6-1.2
Time >=10cm from walls, locomotor time 10.60.61.4-1.20.0-1.0-0.3
Bouts of movement, locomotor time 11.51.62.50.51.61.11.6
Total resting periods, locomotor time 12.32.63.41.11.71.71.8
Rest time, locomotor task time 14.75.18.52.81.22.91.7
Distance moved, locomotor task time 13.84.16.3-2.2-1.4-2.5-1.8
Vertical activity count, locomotor time 13.43.55.9-2.4-0.8-2.4-1.4
Time >=10cm from walls, locomotor time 20.10.10.1-0.3-0.2-0.3-0.3
Bouts of movement, locomotor time 20.40.40.7-0.2-0.8-0.5-0.8
Total resting periods, locomotor time 20.10.10.3-0.0-0.5-0.2-0.5
Rest time, locomotor task time 20.80.91.10.61.01.01.1
Distance moved, locomotor task time 20.30.40.70.8-0.60.4-0.5
Vertical activity count, locomotor time 20.20.30.5-0.2-0.5-0.5-0.7
Weight adjusted by age1.01.22.2-1.5-0.4-1.4-0.6
Seeking ratio, delayed vs. immediate footshock2.52.95.8-0.0-2.4-1.0-2.1
Locomotion in novel chamber0.30.41.01.0-0.10.80.2
Locomotion in novel chamber post-restriction1.41.72.51.6-1.50.7-1.2
Progressive ratio0.00.00.0-0.10.1-0.10.1
Food seeking constrained by brief footshock8.410.312.5-2.5-3.2-3.5-3.5
Seeking ratio, punishment vs. effort1.92.33.1-1.0-1.6-1.6-1.8
Run reversals in cocaine runway, females0.40.41.01.0-0.30.8-0.1
Run reversals in cocaine runway, males0.00.00.00.20.00.20.1
Latency to leave start box in cocaine runway0.40.40.90.2-0.9-0.2-0.8
Latency to leave start box in cocaine runway, F0.00.00.1-0.20.0-0.20.0
Latency to leave start box in cocaine runway, M1.31.21.7-0.8-1.1-1.2-1.3
Cd content in liver0.50.50.90.9-0.80.4-0.7
Co content in liver0.80.92.0-0.51.40.21.2
Cu content in liver1.72.02.71.31.31.61.4
Fe content in liver1.11.43.1-1.80.2-1.5-0.4
K content in liver0.30.30.5-0.70.6-0.30.4
Mg content in liver0.20.20.4-0.30.70.10.6
Mn content in liver0.30.30.70.9-0.50.5-0.3
Na content in liver1.61.72.80.61.71.21.5
Rb content in liver2.73.36.40.12.51.12.4
Se content in liver0.91.12.00.9-1.40.1-1.2
Sr content in liver0.30.30.50.1-0.7-0.2-0.6
Zn content in liver0.40.40.91.0-0.40.7-0.1