Tbc1d22a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000017057 0.1 0.07 1.2e-11 0.07 0.07 0.08 0.08 1.2e-08 1.4e-08 5.4e-09 9.3e-09
2 Adipose mRNA stability ENSRNOG00000017057 0.04 0.02 4.0e-05 0.03 0.03 0.03 0.02 4.3e-04 3.8e-04 8.1e-04 1.5e-03
3 Liver gene expression ENSRNOG00000017057 0.15 0.07 0.0e+00 0.16 0.16 0.16 0.16 5.6e-18 3.3e-17 7.8e-17 1.3e-17

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail3.611.812.53.4-3.4-3.5
BMI without tail1.32.83.41.7-1.8-1.4
Body weight3.012.513.03.6-3.6-3.4
Epididymis fat weight0.71.51.81.2-1.1-1.4
Glucose0.00.00.0-0.00.1-0.2
Heart weight0.30.40.4-0.60.60.6
Left kidney weight13.037.339.16.1-6.2-5.9
Right kidney weight13.037.037.46.1-6.1-6.0
Tail length0.30.81.6-0.70.51.3
Length with tail0.41.51.81.3-1.3-1.1
Length without tail2.24.96.32.2-1.9-2.5
Liver weight, left0.40.60.80.8-0.7-0.9
Liver weight, right0.81.41.61.3-1.2-1.1
Parametrial fat weight0.30.71.1-0.70.61.0
Retroperitoneal fat weight3.210.510.93.3-3.2-3.2
Intraocular pressure0.81.21.31.2-1.0-1.0
Extensor digitorum longus weight0.62.32.61.6-1.5-1.5
Soleus weight0.30.81.00.9-0.8-1.0
Tibialis anterior weight0.10.40.5-0.60.70.7
Tibia length0.30.70.80.8-0.9-0.9
Number of licking bursts0.20.30.3-0.50.50.6
Food consumed during 24 hour testing period5.16.16.72.5-2.6-2.4
Times rat made contact with spout0.40.40.50.7-0.7-0.5
Mean time between licks in bursts1.41.92.5-1.31.21.6
Mean num. licks in bursts1.41.71.81.3-1.3-1.3
Std. dev. time between licks in bursts0.10.10.2-0.40.40.3
Water consumed over 24 hours2.32.73.01.6-1.7-1.6
Indifference point 0 sec0.00.00.0-0.00.0-0.0
Indifference point AUC0.40.50.6-0.80.60.7
Indifference point function ln k4.05.65.82.4-2.3-2.4
Indifference point function log k4.05.65.82.4-2.3-2.4
Delay discounting total patch changes 0 sec0.10.10.1-0.30.30.3
Delay discounting total patch changes 12 sec0.00.00.0-0.10.00.2
Delay discounting total patch changes 18 sec0.60.80.8-0.90.80.9
Delay discounting total patch changes 24 sec0.10.10.2-0.30.30.4
Delay discounting total patch changes 6 sec0.71.01.1-1.11.01.0
Delay discounting time to switch 0 sec0.30.50.6-0.60.70.8
Delay discounting water rate 0 sec0.30.50.70.6-0.8-0.7
Delay discounting water rate 12 sec0.81.21.41.1-1.1-1.2
Delay discounting water rate 18 sec0.10.10.20.2-0.4-0.2
Delay discounting water rate 24 sec0.91.21.51.0-1.0-1.2
Delay discounting water rate 6 sec0.00.00.0-0.00.00.0
Locomotor activity3.65.66.12.5-2.5-2.2
Locomotor testing distance0.50.91.01.0-1.0-0.8
Locomotor testing rearing0.81.31.51.2-1.2-0.9
Light reinforcement 10.30.61.00.8-1.0-0.4
Light reinforcement 24.45.86.12.4-2.5-2.4
Reaction time number correct0.30.50.5-0.70.60.7
Reaction time mean minus median0.20.30.4-0.50.60.4
Reaction time mean minus median AUC0.10.10.2-0.30.40.3
Reaction time num false alarms0.00.00.10.2-0.3-0.1
Reaction time num false alarms AUC0.00.10.10.3-0.3-0.1
Reaction time trials correct on left0.30.50.5-0.70.60.7
Reaction time trials on left0.40.50.6-0.70.70.8
Reaction time mean2.12.93.5-1.81.91.5
Reaction time mean AUC2.63.54.0-1.92.01.7
Median of all reaction times2.73.74.3-2.02.11.7
Reaction time omissions1.62.12.5-1.61.51.3
Reaction time false alarm rate0.30.40.50.6-0.7-0.6
Reaction time premature initiation rate0.20.30.60.5-0.4-0.7
Reaction time premature initiations0.00.00.0-0.00.1-0.1
Std. dev. reaction times0.81.21.4-1.11.20.9
Reaction time trials completed0.40.50.6-0.70.70.8
Reaction time trials AUC0.10.20.2-0.40.40.5
Social response proportion1.71.92.01.4-1.3-1.4
Social responses1.41.82.21.4-1.5-1.1
Social time0.10.10.1-0.30.20.3
Conditioned locomotion0.10.10.10.3-0.2-0.3
Cocaine response after cond. corrected0.50.60.60.8-0.7-0.8
Cocaine response after cond. not corrected0.20.20.20.5-0.5-0.4
Cocaine response before conditioning0.40.50.7-0.70.60.8
Saline control response0.40.50.60.7-0.7-0.8
Condit. Reinf. active minus inactive responses0.50.60.60.7-0.8-0.8
Condit. Reinf. active-inactive response ratio0.00.10.10.2-0.3-0.2
Condit. Reinf. active responses1.72.32.41.5-1.6-1.5
Condit. Reinf. inactive responses3.03.73.81.9-2.0-1.9
Condit. Reinf. lever presses0.40.60.80.7-0.9-0.6
Condit. Reinf. lever reinforcers received1.11.61.61.2-1.3-1.3
Pavlov. Cond. lever latency0.10.20.3-0.40.50.4
Pavlov. Cond. magazine entry latency1.11.21.7-1.21.30.8
Pavlov. Cond. change in total contacts0.00.00.0-0.10.0-0.1
Pavlov. Cond. index score0.10.10.1-0.40.30.2
Pavlov. Cond. latency score0.00.00.1-0.30.20.1
Pavlov. Cond. lever contacts0.30.40.40.6-0.6-0.6
Pavlov. Cond. magazine entry number0.50.60.70.8-0.8-0.6
Pavlov. Cond. intertrial magazine entries0.91.11.41.0-1.0-1.2
Pavlov. Cond. lever-magazine prob. diff.0.10.20.2-0.40.40.3
Pavlov. Cond. response bias0.00.00.0-0.0-0.0-0.1
Conditioned reinforcement - actives0.10.10.10.3-0.2-0.2
Conditioned reinforcement - inactives1.41.62.11.2-1.1-1.4
Conditioned locomotion2.53.03.41.7-1.8-1.6
Intermittent access intake day 1-15 change0.70.70.90.8-0.7-1.0
Intermittent access intake escalation1.61.61.81.3-1.1-1.4
Intermittent access intake escalation 20.30.30.50.4-0.3-0.7
Intermitt. access day 1 inactive lever presses0.20.20.30.4-0.3-0.6
Intermitt. access day 15 inactive lever presses3.23.53.81.9-1.8-2.0
Intermitt. access escalation Index0.60.60.60.8-0.7-0.8
Intermittent access day 1 total infusions3.94.44.62.1-2.1-2.1
Intermittent access day 15 total infusions5.46.16.72.5-2.3-2.6
Intermittent access terminal intake (last 3 days)8.49.110.23.0-2.8-3.2
Intermittent access total infusions7.28.09.02.8-2.7-3.0
Intermittent access day 1 locomotion1.91.92.11.4-1.3-1.4
Intermittent access day 15 total locomotion3.94.24.52.1-2.1-1.9
Intermittent access total locomotion4.44.95.22.2-2.1-2.3
Intermittent access standard deviation1.51.62.31.1-1.0-1.5
Cocaine induced anxiety1.92.23.01.4-1.3-1.7
Post-drug Anxiety0.91.01.70.9-0.7-1.3
Baseline Anxiety0.91.01.0-0.91.01.0
Lifetime Intake6.97.78.22.8-2.7-2.9
Incentive Sensitization - Responses0.50.50.80.6-0.6-0.9
Incentive Sensitization - Breakpoint0.60.60.90.7-0.6-0.9
Progressive ratio test 1 active lever presses2.02.02.11.5-1.4-1.4
Progressive ratio test 1 breakpoint1.81.92.01.4-1.4-1.3
Progressive ratio test 1 inactive lever presses0.60.60.70.8-0.7-0.8
Progressive ratio test 2 active lever presses1.01.11.51.0-0.8-1.2
Progressive ratio test 2 breakpoint0.80.91.40.9-0.8-1.2
Progressive ratio test 2 inactive lever presses2.63.14.11.7-1.5-2.0
Total sessions with >9 infusions4.04.44.92.1-2.2-2.0
Short access day 1 total inactive lever presses4.24.74.92.2-2.2-2.1
Short access day 10 total inactive lever presses0.40.40.50.7-0.6-0.6
Short access day 1 total infusions2.52.63.01.7-1.7-1.4
Short access day 10 total infusions6.16.76.92.6-2.5-2.6
Short access total infusions7.48.28.32.9-2.9-2.8
Short access day 1 locomotion0.20.20.30.4-0.5-0.5
Short access day 10 total locomotion0.20.20.40.6-0.6-0.2
Short access total locomotion2.52.62.81.6-1.7-1.6
Compulsive drug intake1.11.11.1-1.11.11.1
One hour access (0.3 mA shock)1.71.92.31.4-1.2-1.5
One hour access (shock baseline)4.04.65.22.2-2.0-2.3
Number of responses in last shaping day0.00.00.0-0.0-0.10.2
Context. condit. distance diff. score1.11.31.41.2-1.2-1.1
Locomotion velocity, session 11.01.11.51.1-1.2-0.8
Locomotion distance, session 10.40.60.9-0.70.60.9
Locomotion velocity, session 23.64.24.62.1-2.1-1.9
Locomotion distance, session 20.10.20.2-0.50.50.4
Locomotion velocity, session 31.41.72.11.4-1.4-1.0
Locomotion distance, session 30.00.00.00.1-0.10.1
Stereotopy head waving bouts, day 30.30.30.60.6-0.7-0.4
Stereotopy head waving duration, day 30.91.11.61.1-1.3-0.8
Locomotion velocity, session 70.70.81.11.0-1.0-0.6
Locomotion distance, session 70.30.30.40.6-0.6-0.6
Stereotopy head waving bouts, day 70.91.01.21.0-1.1-0.8
Stereotopy head waving duration, day 70.30.30.40.6-0.6-0.4
Locomotion velocity, session 86.17.37.42.7-2.7-2.7
Locomotion distance, session 80.50.80.80.9-0.9-0.8
Degree of sensitization distance1.41.41.71.2-1.1-1.3
Degree of sensitization stereotypy0.50.60.70.8-0.8-0.7
Condit. Reinf. active minus inactive responses0.20.30.4-0.60.40.4
Condit. Reinf. active-inactive response ratio1.31.41.7-1.31.21.1
Condit. Reinf. active responses0.70.81.0-1.00.80.9
Condit. Reinf. inactive responses0.10.10.1-0.20.20.4
Incentive salience index mean0.10.10.20.2-0.4-0.2
Condit. Reinf. lever presses1.01.31.81.1-1.3-1.0
Time in familiar zone, hab. session 11.51.41.61.3-1.2-1.1
Time in novel zone, hab. session 10.30.30.3-0.60.40.5
Total zone transitions, hab. session 12.43.43.4-1.81.81.8
Total locomotion distance, hab. session 10.10.10.2-0.30.20.5
Locomotion velocity, hab. session 10.10.10.2-0.30.20.5
Time in familiar zone, hab. session 20.20.20.20.4-0.5-0.2
Time in novel zone, hab. session 20.70.70.8-0.90.90.7
Total zone transitions, hab. session 20.10.10.10.3-0.3-0.4
Total locomotion distance, hab. session 20.10.10.10.3-0.3-0.2
Locomotion velocity, hab. session 20.00.00.10.2-0.3-0.1
Novel to familiar place preference ratio0.80.81.0-0.90.81.0
Novelty place preference0.40.40.6-0.60.50.8
Time in novel zone, NPP test0.50.60.8-0.70.60.9
Total zone transitions, NPP test0.91.31.5-1.11.21.1
Total locomotion distance, NPP test0.10.20.2-0.40.40.4
Locomotion velocity, NPP test0.10.20.2-0.40.40.5
Pavlov. Cond. lever latency0.81.01.1-0.91.11.0
Pavlov. Cond. magazine entry latency0.00.00.0-0.10.1-0.0
Pavlov. Cond. change in total contacts0.20.20.30.4-0.5-0.6
Pavlov. Cond. index score0.30.30.40.5-0.6-0.7
Pavlov. Cond. latency score0.50.60.70.7-0.8-0.8
Pavlov. Cond. lever contacts1.61.92.11.3-1.4-1.3
Pavlov. Cond. magazine entry number0.00.10.1-0.20.20.3
Pavlov. Cond. intertrial magazine entries0.70.80.9-0.91.00.8
Pavlov. Cond. lever-magazine prob. diff.0.10.20.20.3-0.4-0.5
Pavlov. Cond. response bias0.70.91.00.9-0.9-1.0
Bone: apparent density0.50.91.0-0.91.00.9
Bone surface0.20.40.4-0.60.70.7
Bone volume0.50.80.9-0.80.90.9
Bone: connectivity density0.30.50.5-0.70.70.7
Bone: cortical apparent density1.41.82.0-1.41.41.2
Bone: cortical area1.72.52.71.5-1.6-1.6
Bone: cortical porosity2.42.63.31.5-1.5-1.8
Bone: cortical porosity2.12.22.91.4-1.4-1.7
Bone: cortical thickness0.00.10.20.1-0.0-0.4
Bone: cortical thickness2.12.43.11.5-1.4-1.8
Bone: cortical tissue density1.11.41.6-1.21.21.1
Bone: elastic displacement0.50.50.60.8-0.8-0.6
Bone: elastic work4.05.15.32.3-2.3-2.3
Bone: endosteal estimation2.14.65.22.2-2.3-1.9
Bone: endosteal perimeter3.67.37.92.8-2.8-2.5
Bone: final force0.81.41.71.1-1.1-1.3
Bone: final moment1.01.72.01.2-1.2-1.4
Bone: marrow area2.14.65.22.2-2.3-2.0
Bone: maximum diameter6.812.513.03.5-3.6-3.5
Bone: maximum force1.01.82.21.3-1.2-1.5
Bone: maximum moment1.22.12.61.4-1.4-1.6
Bone: minimum diameter2.13.84.22.0-2.0-1.9
Bone: periosteal estimation2.75.55.82.3-2.4-2.3
Bone: periosteal perimeter4.88.08.72.8-2.9-2.7
Bone: post-yield work0.91.21.3-1.21.11.0
Bone: stiffness0.10.10.3-0.40.50.0
Bone: tissue strength0.30.30.4-0.50.60.4
Bone: trabecular number0.50.80.8-0.80.90.9
Bone: trabecular spacing2.53.33.81.8-1.9-1.6
Bone: trabecular thickness0.10.10.1-0.30.40.2
Bone: trabecular tissue density1.41.92.2-1.41.51.3
Breakpoint value in progressive ratio session0.00.00.1-0.10.30.0
Distance traveled before self-admin0.20.20.20.4-0.5-0.3
Distance traveled after self-admin1.21.31.41.1-1.1-1.2
Delta time in closed arm before/after self-admin0.00.00.00.10.0-0.2
Delta time in open arm before/after self-admin0.10.10.3-0.10.10.6
Diff in mean of infusions in LGA sessions0.30.30.60.5-0.4-0.7
Extinction: sum of active levers before priming0.10.10.1-0.20.30.0
Active lever presses in extinction session 61.00.91.10.9-0.9-1.1
Delta distance traveled before/after self-admin0.50.50.50.7-0.7-0.7
Delta ambulatory time before/after self-admin0.40.40.40.7-0.6-0.6
Time in closed arm before self-admin0.10.10.2-0.30.5-0.0
Time in closed arm after self-admin0.10.10.20.3-0.2-0.5
Time in open arm before self-admin0.40.40.7-0.50.60.8
Time in open arm after self-admin0.60.71.2-0.70.71.1
Sum of active levers in priming session hrs 5-60.00.00.00.1-0.0-0.1
Time to tail flick, vehicle, before self-admin0.20.20.2-0.40.40.5
Time to tail flick, vehicle, after self-admin0.30.30.40.6-0.7-0.4
Time to tail flick, test, before self-admin1.91.82.01.4-1.4-1.3
Time to tail flick, test, after self-admin0.10.10.2-0.0-0.0-0.5
Delta time to tail flick, vehicle, before/after SA0.50.50.50.7-0.7-0.7
Delta time to tail flick, test, before/after SA1.81.62.0-1.41.40.9
Ambulatory time before self-admin0.00.00.10.2-0.20.0
Ambulatory time after self-admin0.20.30.30.5-0.5-0.6
Total heroin consumption0.10.20.20.4-0.4-0.4
Area under the delay curve5.66.06.2-2.52.42.4
Delay disc. indifference point, 0s delay0.10.10.10.2-0.1-0.4
Delay disc. indifference point, 16s delay5.65.66.1-2.42.52.3
Delay disc. indifference point, 2s delay0.80.91.0-1.01.01.0
Delay disc. indifference point, 24s delay0.10.10.1-0.30.20.2
Delay disc. indifference point, 4s delay8.38.79.4-3.12.82.9
Delay disc. indifference point, 8s delay5.35.45.5-2.42.32.3
Delay discount exponential model param5.96.26.42.5-2.5-2.5
Delay discount hyperbolic model param5.55.86.02.4-2.4-2.4
Fecal boli incidents, locomotor time 10.00.10.10.3-0.2-0.1
Change in fecal boli incidents, locomotor task0.80.71.0-0.90.61.0
Time >=10cm from walls, locomotor time 10.00.00.00.0-0.10.0
Bouts of movement, locomotor time 10.70.80.90.8-0.8-1.0
Total resting periods, locomotor time 10.20.20.30.4-0.4-0.6
Rest time, locomotor task time 10.30.30.40.5-0.7-0.5
Distance moved, locomotor task time 10.00.00.00.2-0.20.0
Vertical activity count, locomotor time 10.10.10.1-0.30.20.3
Time >=10cm from walls, locomotor time 20.50.50.70.5-0.6-0.9
Bouts of movement, locomotor time 21.01.11.3-1.11.10.9
Total resting periods, locomotor time 21.01.11.4-1.11.20.9
Rest time, locomotor task time 22.52.93.5-1.61.61.9
Distance moved, locomotor task time 24.04.74.72.2-2.2-2.2
Vertical activity count, locomotor time 24.14.54.62.1-2.1-2.2
Weight adjusted by age2.02.22.61.4-1.5-1.6
Seeking ratio, delayed vs. immediate footshock1.11.31.5-1.11.21.0
Locomotion in novel chamber0.91.12.5-0.80.61.6
Locomotion in novel chamber post-restriction0.10.10.2-0.10.10.5
Progressive ratio0.50.60.9-0.70.70.9
Food seeking constrained by brief footshock1.01.21.61.1-1.0-1.2
Seeking ratio, punishment vs. effort1.31.62.31.1-1.1-1.5
Run reversals in cocaine runway, females0.40.40.8-0.60.40.9
Run reversals in cocaine runway, males0.20.20.30.4-0.6-0.1
Latency to leave start box in cocaine runway2.12.32.61.5-1.6-1.4
Latency to leave start box in cocaine runway, F1.11.21.21.1-1.1-1.1
Latency to leave start box in cocaine runway, M2.01.92.21.4-1.5-1.3
Cd content in liver0.10.10.2-0.30.40.3
Co content in liver0.70.81.10.9-1.0-0.7
Cu content in liver8.410.110.4-3.23.23.1
Fe content in liver0.40.50.60.7-0.6-0.8
K content in liver0.00.00.10.1-0.0-0.4
Mg content in liver0.10.10.10.10.1-0.4
Mn content in liver1.41.61.71.3-1.3-1.2
Na content in liver2.72.83.5-1.71.91.4
Rb content in liver0.60.80.8-0.90.90.8
Se content in liver0.00.00.00.1-0.1-0.0
Sr content in liver2.62.43.6-1.51.11.9
Zn content in liver0.91.01.1-1.01.01.1