ENSRNOG00000017054

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000017054 0.12 0.07 6.6e-14 0.1 0.09 0.09 0.1 1.3e-11 3.7e-10 2.6e-10 6.1e-11
2 Brain gene expression ENSRNOG00000017054 0.14 0.09 2.5e-12 0.14 0.13 0.13 0.14 1.2e-12 3.2e-12 7.0e-12 1.7e-12
3 PL gene expression ENSRNOG00000017054 0.09 0.06 1.9e-05 0.04 0.07 0.07 0.07 2.2e-04 4.6e-06 7.4e-06 7.1e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.10.40.7-0.5-0.8-0.7
BMI without tail1.43.05.0-1.2-1.5-2.2
Body weight1.24.97.7-1.8-2.0-2.8
Epididymis fat weight2.25.15.9-2.1-2.2-2.4
Glucose0.10.10.20.40.30.4
Heart weight0.71.01.41.21.00.7
Left kidney weight0.41.23.2-0.6-0.4-1.8
Right kidney weight0.31.02.3-0.7-0.4-1.5
Tail length1.85.411.8-1.5-1.5-3.4
Length with tail1.55.610.2-1.8-1.8-3.2
Length without tail0.10.10.2-0.5-0.4-0.1
Liver weight, left2.43.84.1-1.9-2.0-2.0
Liver weight, right5.28.69.1-2.8-3.0-3.0
Parametrial fat weight2.24.35.0-2.0-2.2-2.0
Retroperitoneal fat weight9.029.931.4-5.4-5.6-5.4
Intraocular pressure0.91.21.61.01.31.1
Extensor digitorum longus weight0.62.43.1-1.5-1.4-1.8
Soleus weight1.85.17.0-2.1-2.0-2.6
Tibialis anterior weight0.10.40.9-0.5-0.4-1.0
Tibia length2.57.18.22.82.92.3
Number of licking bursts4.65.46.8-2.6-2.6-1.7
Food consumed during 24 hour testing period3.64.35.32.32.31.6
Times rat made contact with spout1.31.51.6-1.2-1.1-1.3
Mean time between licks in bursts0.60.82.10.40.4-1.4
Mean num. licks in bursts3.23.94.92.22.21.3
Std. dev. time between licks in bursts1.01.22.9-0.6-0.6-1.7
Water consumed over 24 hours0.10.10.2-0.4-0.40.1
Indifference point 0 sec2.13.54.82.22.11.0
Indifference point AUC0.60.81.4-0.8-0.5-1.2
Indifference point function ln k2.94.14.22.12.02.0
Indifference point function log k2.94.14.22.12.02.0
Delay discounting total patch changes 0 sec1.62.53.61.91.80.8
Delay discounting total patch changes 12 sec0.20.30.80.00.3-0.9
Delay discounting total patch changes 18 sec0.50.61.11.00.9-0.0
Delay discounting total patch changes 24 sec0.20.20.60.10.1-0.8
Delay discounting total patch changes 6 sec0.50.71.40.81.20.4
Delay discounting time to switch 0 sec1.11.62.4-1.6-1.5-0.4
Delay discounting water rate 0 sec1.82.83.82.01.91.0
Delay discounting water rate 12 sec2.13.23.92.01.91.3
Delay discounting water rate 18 sec0.30.40.70.80.80.2
Delay discounting water rate 24 sec2.63.64.31.92.11.8
Delay discounting water rate 6 sec1.42.02.31.51.51.2
Locomotor activity0.60.91.70.91.30.6
Locomotor testing distance0.61.12.01.11.40.2
Locomotor testing rearing0.20.41.1-0.30.0-1.0
Light reinforcement 11.32.43.1-1.8-1.8-0.9
Light reinforcement 20.10.10.30.10.20.5
Reaction time number correct1.42.02.71.21.41.6
Reaction time mean minus median0.10.10.10.30.3-0.2
Reaction time mean minus median AUC0.60.81.01.01.00.5
Reaction time num false alarms2.12.93.4-1.9-1.8-1.4
Reaction time num false alarms AUC0.91.21.6-1.2-1.2-0.8
Reaction time trials correct on left1.42.02.71.21.41.6
Reaction time trials on left1.42.02.71.21.31.6
Reaction time mean1.31.82.4-1.3-1.5-1.1
Reaction time mean AUC1.21.62.4-1.2-1.6-0.9
Median of all reaction times1.52.03.1-1.4-1.8-1.0
Reaction time omissions0.50.70.8-0.8-0.9-0.8
Reaction time false alarm rate2.23.13.6-1.8-1.9-1.6
Reaction time premature initiation rate0.81.02.6-0.5-0.5-1.6
Reaction time premature initiations0.10.20.20.30.5-0.4
Std. dev. reaction times0.71.01.8-0.8-0.8-1.3
Reaction time trials completed1.42.02.71.21.31.6
Reaction time trials AUC1.01.52.01.01.21.4
Social response proportion0.90.91.0-1.0-0.9-0.9
Social responses1.82.42.8-1.5-1.5-1.7
Social time0.60.71.2-1.0-1.10.0
Conditioned locomotion0.10.10.20.20.30.5
Cocaine response after cond. corrected2.73.03.5-1.8-1.9-1.5
Cocaine response after cond. not corrected0.60.70.9-0.8-1.0-0.7
Cocaine response before conditioning3.03.74.22.12.01.7
Saline control response0.30.40.60.70.7-0.2
Condit. Reinf. active minus inactive responses1.41.72.71.61.6-0.1
Condit. Reinf. active-inactive response ratio0.60.60.91.01.00.3
Condit. Reinf. active responses1.41.92.91.61.7-0.5
Condit. Reinf. inactive responses0.60.70.90.90.9-0.6
Condit. Reinf. lever presses5.77.811.53.33.40.8
Condit. Reinf. lever reinforcers received1.92.74.21.92.1-0.2
Pavlov. Cond. lever latency6.99.514.3-3.6-3.8-1.2
Pavlov. Cond. magazine entry latency3.13.54.72.12.21.2
Pavlov. Cond. change in total contacts6.49.012.83.53.61.5
Pavlov. Cond. index score6.18.011.63.33.41.2
Pavlov. Cond. latency score5.87.310.63.13.31.2
Pavlov. Cond. lever contacts7.210.015.03.73.91.2
Pavlov. Cond. magazine entry number5.26.48.5-2.8-2.9-1.6
Pavlov. Cond. intertrial magazine entries1.31.72.4-1.1-1.1-1.6
Pavlov. Cond. lever-magazine prob. diff.5.36.910.13.13.21.1
Pavlov. Cond. response bias8.111.116.43.94.01.5
Conditioned reinforcement - actives3.53.44.12.02.01.5
Conditioned reinforcement - inactives0.40.40.7-0.5-0.9-0.5
Conditioned locomotion4.35.15.92.42.32.1
Intermittent access intake day 1-15 change0.70.71.40.71.20.5
Intermittent access intake escalation1.01.01.90.81.40.6
Intermittent access intake escalation 20.10.10.1-0.20.4-0.4
Intermitt. access day 1 inactive lever presses0.60.60.8-0.8-0.9-0.7
Intermitt. access day 15 inactive lever presses0.40.40.60.80.40.7
Intermitt. access escalation Index0.20.20.20.40.50.3
Intermittent access day 1 total infusions0.40.51.11.10.50.4
Intermittent access day 15 total infusions1.41.62.11.41.40.9
Intermittent access terminal intake (last 3 days)0.80.81.21.11.00.6
Intermittent access total infusions0.50.51.01.00.60.4
Intermittent access day 1 locomotion0.40.50.60.70.60.6
Intermittent access day 15 total locomotion1.71.82.51.41.61.0
Intermittent access total locomotion0.60.61.01.00.80.6
Intermittent access standard deviation0.10.10.1-0.2-0.0-0.4
Cocaine induced anxiety0.91.11.6-1.3-1.2-0.5
Post-drug Anxiety1.11.21.6-1.3-1.0-0.9
Baseline Anxiety0.20.30.50.50.7-0.0
Lifetime Intake0.70.81.41.20.70.6
Incentive Sensitization - Responses0.40.40.70.60.8-0.2
Incentive Sensitization - Breakpoint0.50.50.90.71.0-0.0
Progressive ratio test 1 active lever presses0.00.00.1-0.1-0.40.0
Progressive ratio test 1 breakpoint0.10.10.2-0.2-0.5-0.2
Progressive ratio test 1 inactive lever presses0.10.10.30.6-0.10.1
Progressive ratio test 2 active lever presses0.20.20.30.50.5-0.1
Progressive ratio test 2 breakpoint0.10.20.20.50.5-0.2
Progressive ratio test 2 inactive lever presses0.91.01.61.30.80.8
Total sessions with >9 infusions2.62.84.02.01.71.3
Short access day 1 total inactive lever presses0.10.10.10.1-0.30.2
Short access day 10 total inactive lever presses0.00.00.0-0.10.00.1
Short access day 1 total infusions0.80.91.61.30.90.4
Short access day 10 total infusions0.20.20.40.70.4-0.1
Short access total infusions0.30.30.70.90.30.2
Short access day 1 locomotion3.43.64.22.11.91.7
Short access day 10 total locomotion0.10.20.40.10.7-0.2
Short access total locomotion0.20.20.30.40.50.2
Compulsive drug intake0.60.60.70.50.90.8
One hour access (0.3 mA shock)1.01.21.91.21.40.5
One hour access (shock baseline)0.40.40.70.80.80.1
Number of responses in last shaping day0.10.10.3-0.1-0.1-0.6
Context. condit. distance diff. score2.83.44.02.02.01.5
Locomotion velocity, session 10.40.40.80.40.50.9
Locomotion distance, session 11.31.71.91.31.41.1
Locomotion velocity, session 20.00.00.00.10.1-0.0
Locomotion distance, session 20.50.70.90.91.00.7
Locomotion velocity, session 31.51.82.01.31.41.3
Locomotion distance, session 32.72.93.11.71.81.6
Stereotopy head waving bouts, day 30.81.01.0-1.0-0.9-1.0
Stereotopy head waving duration, day 30.20.30.40.50.60.5
Locomotion velocity, session 70.00.00.1-0.10.10.3
Locomotion distance, session 70.10.10.2-0.4-0.3-0.3
Stereotopy head waving bouts, day 72.52.83.61.91.71.3
Stereotopy head waving duration, day 72.22.63.61.91.81.1
Locomotion velocity, session 80.70.91.21.01.10.7
Locomotion distance, session 82.03.03.91.92.01.3
Degree of sensitization distance3.73.74.4-1.9-1.8-2.1
Degree of sensitization stereotypy5.15.57.12.72.51.8
Condit. Reinf. active minus inactive responses0.20.20.5-0.3-0.2-0.7
Condit. Reinf. active-inactive response ratio0.20.20.6-0.2-0.1-0.8
Condit. Reinf. active responses0.10.10.2-0.3-0.2-0.5
Condit. Reinf. inactive responses0.00.00.00.00.10.2
Incentive salience index mean0.10.10.3-0.10.0-0.5
Condit. Reinf. lever presses0.00.00.10.10.3-0.1
Time in familiar zone, hab. session 10.30.20.3-0.4-0.5-0.6
Time in novel zone, hab. session 10.10.10.2-0.5-0.4-0.2
Total zone transitions, hab. session 10.60.81.10.70.91.0
Total locomotion distance, hab. session 12.23.23.5-1.8-1.6-1.9
Locomotion velocity, hab. session 11.21.82.1-1.4-1.2-1.4
Time in familiar zone, hab. session 20.30.30.50.70.70.0
Time in novel zone, hab. session 20.00.00.1-0.1-0.10.3
Total zone transitions, hab. session 22.12.73.21.71.81.4
Total locomotion distance, hab. session 21.11.52.3-1.0-1.0-1.5
Locomotion velocity, hab. session 21.62.23.1-1.3-1.3-1.8
Novel to familiar place preference ratio0.10.10.10.30.20.2
Novelty place preference0.10.10.10.30.20.2
Time in novel zone, NPP test0.20.20.30.50.40.3
Total zone transitions, NPP test0.60.91.00.91.01.0
Total locomotion distance, NPP test1.62.22.5-1.4-1.4-1.6
Locomotion velocity, NPP test1.92.82.8-1.7-1.7-1.7
Pavlov. Cond. lever latency0.40.50.8-0.9-0.9-0.2
Pavlov. Cond. magazine entry latency0.81.11.61.31.30.2
Pavlov. Cond. change in total contacts0.40.40.60.80.80.1
Pavlov. Cond. index score0.81.01.61.21.20.1
Pavlov. Cond. latency score0.81.11.71.21.30.2
Pavlov. Cond. lever contacts0.20.30.50.60.7-0.2
Pavlov. Cond. magazine entry number1.31.62.4-1.5-1.5-0.5
Pavlov. Cond. intertrial magazine entries0.30.30.5-0.7-0.7-0.1
Pavlov. Cond. lever-magazine prob. diff.0.60.81.21.11.10.2
Pavlov. Cond. response bias0.20.30.50.60.7-0.1
Bone: apparent density0.10.20.40.30.30.6
Bone surface0.30.60.80.90.90.3
Bone volume0.20.40.60.70.80.4
Bone: connectivity density0.50.81.10.70.81.0
Bone: cortical apparent density2.22.93.6-1.9-1.7-1.5
Bone: cortical area0.10.10.20.00.2-0.5
Bone: cortical porosity2.02.12.31.51.51.3
Bone: cortical porosity1.81.92.01.41.41.3
Bone: cortical thickness0.00.00.1-0.3-0.00.0
Bone: cortical thickness0.40.40.60.60.80.6
Bone: cortical tissue density2.12.73.4-1.8-1.7-1.4
Bone: elastic displacement0.30.30.4-0.6-0.60.3
Bone: elastic work0.20.20.4-0.4-0.30.6
Bone: endosteal estimation0.20.41.10.1-0.0-1.1
Bone: endosteal perimeter0.20.30.60.40.4-0.8
Bone: final force0.00.00.0-0.2-0.1-0.2
Bone: final moment0.00.00.0-0.00.1-0.1
Bone: marrow area0.20.41.3-0.0-0.2-1.1
Bone: maximum diameter0.20.40.70.70.8-0.4
Bone: maximum force0.00.00.00.00.2-0.1
Bone: maximum moment0.00.00.10.20.3-0.0
Bone: minimum diameter1.01.83.4-1.0-1.0-1.9
Bone: periosteal estimation0.10.30.80.20.2-0.9
Bone: periosteal perimeter0.10.20.30.40.4-0.5
Bone: post-yield work0.10.10.20.40.30.2
Bone: stiffness0.71.01.1-1.0-1.0-1.0
Bone: tissue strength1.21.12.10.80.81.4
Bone: trabecular number0.10.20.4-0.2-0.10.6
Bone: trabecular spacing0.50.71.01.00.90.5
Bone: trabecular thickness0.30.30.4-0.6-0.5-0.5
Bone: trabecular tissue density3.65.15.3-2.3-2.2-2.3
Breakpoint value in progressive ratio session0.10.10.30.20.10.6
Distance traveled before self-admin1.01.01.7-1.3-0.9-0.8
Distance traveled after self-admin0.60.71.70.70.21.3
Delta time in closed arm before/after self-admin6.05.86.6-2.5-2.1-2.6
Delta time in open arm before/after self-admin1.61.52.71.61.20.7
Diff in mean of infusions in LGA sessions2.62.93.9-2.0-1.8-1.2
Extinction: sum of active levers before priming0.20.20.4-0.3-0.6-0.3
Active lever presses in extinction session 66.05.86.12.42.52.3
Delta distance traveled before/after self-admin2.22.43.51.91.11.6
Delta ambulatory time before/after self-admin3.03.34.52.11.31.9
Time in closed arm before self-admin6.57.47.52.72.72.7
Time in closed arm after self-admin0.20.20.50.00.40.7
Time in open arm before self-admin4.85.16.5-2.5-2.4-1.8
Time in open arm after self-admin0.91.01.7-0.7-0.9-1.3
Sum of active levers in priming session hrs 5-60.10.10.10.10.30.4
Time to tail flick, vehicle, before self-admin0.10.10.10.20.30.3
Time to tail flick, vehicle, after self-admin2.93.14.42.11.71.5
Time to tail flick, test, before self-admin0.10.10.2-0.1-0.4-0.5
Time to tail flick, test, after self-admin0.80.81.5-0.6-0.7-1.2
Delta time to tail flick, vehicle, before/after SA1.51.52.41.61.00.9
Delta time to tail flick, test, before/after SA0.30.20.3-0.6-0.4-0.4
Ambulatory time before self-admin0.50.61.1-1.0-0.7-0.4
Ambulatory time after self-admin1.61.73.31.20.61.8
Total heroin consumption0.50.60.80.90.70.8
Area under the delay curve0.20.20.2-0.5-0.4-0.5
Delay disc. indifference point, 0s delay0.20.20.30.50.5-0.0
Delay disc. indifference point, 16s delay0.00.00.00.0-0.20.2
Delay disc. indifference point, 2s delay0.20.20.6-0.1-0.1-0.8
Delay disc. indifference point, 24s delay0.40.40.6-0.7-0.8-0.2
Delay disc. indifference point, 4s delay0.40.41.0-0.3-0.2-1.0
Delay disc. indifference point, 8s delay0.00.00.0-0.10.1-0.2
Delay discount exponential model param0.20.20.30.50.50.5
Delay discount hyperbolic model param0.30.30.40.50.40.7
Fecal boli incidents, locomotor time 12.22.43.61.41.91.3
Change in fecal boli incidents, locomotor task1.01.01.3-1.1-1.1-0.6
Time >=10cm from walls, locomotor time 12.32.32.81.71.61.2
Bouts of movement, locomotor time 10.30.30.40.60.50.5
Total resting periods, locomotor time 10.70.81.00.90.81.0
Rest time, locomotor task time 10.30.30.60.50.30.8
Distance moved, locomotor task time 10.80.91.5-0.8-0.7-1.2
Vertical activity count, locomotor time 10.30.30.6-0.3-0.4-0.8
Time >=10cm from walls, locomotor time 20.60.60.91.00.90.3
Bouts of movement, locomotor time 20.40.51.1-0.6-0.2-1.0
Total resting periods, locomotor time 20.60.61.1-0.8-0.4-1.1
Rest time, locomotor task time 21.11.32.3-1.3-1.5-0.3
Distance moved, locomotor task time 20.70.81.21.01.1-0.0
Vertical activity count, locomotor time 20.10.20.40.20.2-0.6
Weight adjusted by age0.30.40.8-0.4-0.3-0.9
Seeking ratio, delayed vs. immediate footshock0.10.20.2-0.4-0.40.5
Locomotion in novel chamber2.12.73.81.41.91.5
Locomotion in novel chamber post-restriction3.23.74.52.12.11.5
Progressive ratio0.30.40.50.50.70.6
Food seeking constrained by brief footshock0.20.20.6-0.10.1-0.8
Seeking ratio, punishment vs. effort0.60.81.7-0.5-0.7-1.3
Run reversals in cocaine runway, females6.66.57.8-2.2-2.6-2.8
Run reversals in cocaine runway, males0.00.00.10.0-0.30.2
Latency to leave start box in cocaine runway3.53.94.5-2.1-2.1-1.7
Latency to leave start box in cocaine runway, F4.65.05.2-2.3-2.3-2.2
Latency to leave start box in cocaine runway, M0.10.10.20.0-0.10.5
Cd content in liver1.31.41.4-1.1-1.2-1.2
Co content in liver0.10.20.40.30.2-0.6
Cu content in liver0.20.30.8-0.1-0.2-0.9
Fe content in liver0.10.10.1-0.3-0.4-0.3
K content in liver0.60.60.7-0.8-0.8-0.8
Mg content in liver0.00.00.00.10.2-0.1
Mn content in liver0.20.20.6-0.2-0.10.8
Na content in liver0.30.30.40.60.60.5
Rb content in liver0.20.20.30.50.60.0
Se content in liver1.11.31.9-1.4-1.4-0.3
Sr content in liver0.40.40.50.50.50.7
Zn content in liver2.02.23.21.71.80.6