Rgp1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000016309 0.02 0.02 5.2e-03 0.01 0 0.01 0.01 2.1e-02 8.4e-02 2.8e-02 4.9e-02
2 Eye intron excision ratio chr5:57835699:57835951 0.51 0.2 9.0e-04 0.05 0.03 0 0.03 6.3e-02 1.4e-01 2.9e-01 1.4e-01
3 Liver gene expression ENSRNOG00000016309 0.02 0.02 5.1e-03 0.02 0.02 0.02 0.02 1.2e-03 4.6e-03 3.7e-03 3.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail3.110.012.42.83.53.1
BMI without tail5.411.314.83.82.73.4
Body weight3.514.716.84.13.83.6
Epididymis fat weight0.41.01.81.30.11.0
Glucose1.01.61.91.41.21.2
Heart weight0.40.61.11.10.50.7
Left kidney weight0.30.81.81.30.70.5
Right kidney weight0.10.20.30.3-0.5-0.3
Tail length2.06.210.33.21.12.6
Length with tail0.51.94.12.00.51.2
Length without tail0.40.81.4-0.9-0.5-1.2
Liver weight, left0.40.70.80.9-0.80.8
Liver weight, right0.40.61.5-0.2-1.2-0.6
Parametrial fat weight0.10.20.60.8-0.20.4
Retroperitoneal fat weight0.10.30.5-0.7-0.5-0.4
Intraocular pressure2.23.14.72.21.51.5
Extensor digitorum longus weight4.116.519.64.43.74.0
Soleus weight0.72.15.00.1-2.2-1.2
Tibialis anterior weight5.619.528.25.33.54.3
Tibia length0.51.53.50.2-1.9-0.9
Number of licking bursts4.75.66.32.42.22.5
Food consumed during 24 hour testing period0.40.50.90.90.10.7
Times rat made contact with spout0.40.41.00.11.00.5
Mean time between licks in bursts1.01.43.0-0.8-1.7-0.7
Mean num. licks in bursts2.53.04.1-2.0-1.3-1.8
Std. dev. time between licks in bursts0.40.50.7-0.7-0.8-0.6
Water consumed over 24 hours0.70.81.30.71.10.8
Indifference point 0 sec0.50.81.31.21.0-0.3
Indifference point AUC8.810.313.23.62.83.1
Indifference point function ln k2.83.94.5-2.1-1.8-2.0
Indifference point function log k2.83.94.5-2.1-1.8-2.0
Delay discounting total patch changes 0 sec0.91.52.31.51.40.1
Delay discounting total patch changes 12 sec3.34.47.21.82.71.6
Delay discounting total patch changes 18 sec0.91.11.61.31.10.8
Delay discounting total patch changes 24 sec2.93.74.62.12.11.4
Delay discounting total patch changes 6 sec3.14.76.72.62.31.4
Delay discounting time to switch 0 sec3.45.27.4-2.7-2.1-2.0
Delay discounting water rate 0 sec2.43.85.42.12.31.3
Delay discounting water rate 12 sec0.00.00.10.3-0.0-0.2
Delay discounting water rate 18 sec0.81.02.40.51.50.6
Delay discounting water rate 24 sec0.40.51.3-0.21.10.4
Delay discounting water rate 6 sec0.50.71.01.00.70.8
Locomotor activity0.00.00.10.2-0.10.1
Locomotor testing distance0.30.40.90.3-1.0-0.5
Locomotor testing rearing0.40.61.41.20.20.6
Light reinforcement 10.61.12.51.6-0.9-0.1
Light reinforcement 21.01.32.31.2-1.5-0.5
Reaction time number correct0.00.10.10.30.3-0.1
Reaction time mean minus median0.81.02.00.11.01.4
Reaction time mean minus median AUC1.31.72.80.71.31.7
Reaction time num false alarms0.10.10.20.10.40.5
Reaction time num false alarms AUC0.40.60.60.70.80.8
Reaction time trials correct on left0.00.10.10.30.3-0.1
Reaction time trials on left0.00.00.00.20.2-0.2
Reaction time mean1.01.42.8-1.7-1.0-0.5
Reaction time mean AUC1.21.63.3-1.8-1.0-0.6
Median of all reaction times2.63.55.0-2.2-1.9-1.4
Reaction time omissions1.52.02.6-1.5-1.6-1.1
Reaction time false alarm rate0.00.10.1-0.10.20.3
Reaction time premature initiation rate2.02.65.2-2.3-0.5-1.6
Reaction time premature initiations1.31.93.6-1.9-0.2-1.4
Std. dev. reaction times0.20.30.5-0.70.00.6
Reaction time trials completed0.00.00.00.20.2-0.2
Reaction time trials AUC0.00.00.10.20.2-0.2
Social response proportion2.22.43.5-1.7-1.9-1.0
Social responses0.60.81.21.10.41.1
Social time1.01.33.9-0.1-2.0-0.2
Conditioned locomotion0.10.10.4-0.1-0.1-0.6
Cocaine response after cond. corrected2.52.84.1-1.3-1.6-2.0
Cocaine response after cond. not corrected2.42.73.9-1.0-2.0-1.8
Cocaine response before conditioning0.70.81.21.10.31.1
Saline control response0.30.41.11.10.20.4
Condit. Reinf. active minus inactive responses0.70.91.20.81.10.9
Condit. Reinf. active-inactive response ratio0.30.30.70.20.80.5
Condit. Reinf. active responses2.33.23.61.91.61.8
Condit. Reinf. inactive responses2.93.64.51.91.52.1
Condit. Reinf. lever presses2.73.75.01.71.82.2
Condit. Reinf. lever reinforcers received2.73.84.42.11.72.1
Pavlov. Cond. lever latency2.94.05.3-1.8-1.9-2.3
Pavlov. Cond. magazine entry latency0.70.71.0-0.9-1.0-0.6
Pavlov. Cond. change in total contacts0.81.12.20.60.91.5
Pavlov. Cond. index score0.20.30.60.20.40.8
Pavlov. Cond. latency score0.40.50.90.30.70.9
Pavlov. Cond. lever contacts1.52.12.91.41.21.7
Pavlov. Cond. magazine entry number0.10.10.20.4-0.2-0.4
Pavlov. Cond. intertrial magazine entries0.50.60.80.80.90.6
Pavlov. Cond. lever-magazine prob. diff.0.20.20.60.10.40.8
Pavlov. Cond. response bias0.60.81.30.70.71.2
Conditioned reinforcement - actives0.60.51.40.31.20.4
Conditioned reinforcement - inactives0.10.10.2-0.30.4-0.5
Conditioned locomotion0.91.02.60.51.60.4
Intermittent access intake day 1-15 change0.80.81.30.41.01.1
Intermittent access intake escalation1.41.41.90.81.31.4
Intermittent access intake escalation 21.81.82.60.61.61.5
Intermitt. access day 1 inactive lever presses0.80.81.20.91.10.7
Intermitt. access day 15 inactive lever presses0.00.00.10.10.0-0.3
Intermitt. access escalation Index0.90.81.81.40.10.7
Intermittent access day 1 total infusions0.50.51.4-0.40.2-1.2
Intermittent access day 15 total infusions0.91.02.30.61.50.5
Intermittent access terminal intake (last 3 days)1.21.33.10.71.80.6
Intermittent access total infusions1.31.53.50.91.90.5
Intermittent access day 1 locomotion0.80.81.7-0.70.2-1.3
Intermittent access day 15 total locomotion0.80.81.3-1.00.4-1.1
Intermittent access total locomotion0.70.81.0-0.91.0-0.8
Intermittent access standard deviation0.40.40.80.30.90.6
Cocaine induced anxiety1.21.41.5-1.2-1.1-1.2
Post-drug Anxiety0.30.40.60.8-0.50.5
Baseline Anxiety1.61.72.71.30.91.6
Lifetime Intake1.11.22.61.01.60.1
Incentive Sensitization - Responses0.10.10.3-0.1-0.1-0.5
Incentive Sensitization - Breakpoint0.20.20.4-0.2-0.2-0.6
Progressive ratio test 1 active lever presses0.70.81.90.41.4-0.4
Progressive ratio test 1 breakpoint0.80.92.20.61.5-0.2
Progressive ratio test 1 inactive lever presses0.40.40.90.90.5-0.3
Progressive ratio test 2 active lever presses0.30.30.60.10.4-0.8
Progressive ratio test 2 breakpoint0.30.41.0-0.20.3-1.0
Progressive ratio test 2 inactive lever presses0.40.51.30.41.10.1
Total sessions with >9 infusions0.30.40.90.20.3-1.0
Short access day 1 total inactive lever presses2.22.44.11.62.00.9
Short access day 10 total inactive lever presses0.10.10.20.40.20.4
Short access day 1 total infusions1.01.01.71.31.2-0.0
Short access day 10 total infusions0.70.71.30.91.1-0.1
Short access total infusions0.40.40.50.60.7-0.6
Short access day 1 locomotion0.30.30.8-0.20.4-0.9
Short access day 10 total locomotion0.50.51.1-1.00.3-0.6
Short access total locomotion0.20.20.40.30.7-0.3
Compulsive drug intake0.40.30.60.8-0.00.7
One hour access (0.3 mA shock)0.60.71.01.01.00.4
One hour access (shock baseline)0.60.71.60.61.3-0.1
Number of responses in last shaping day0.30.30.50.7-0.4-0.7
Context. condit. distance diff. score0.10.10.2-0.40.3-0.2
Locomotion velocity, session 10.60.61.51.2-0.5-0.3
Locomotion distance, session 10.20.30.80.9-0.40.1
Locomotion velocity, session 23.13.74.81.91.72.2
Locomotion distance, session 21.31.93.92.00.01.4
Locomotion velocity, session 30.20.20.30.4-0.5-0.4
Locomotion distance, session 32.22.43.11.81.71.1
Stereotopy head waving bouts, day 30.60.71.70.0-1.3-0.7
Stereotopy head waving duration, day 30.60.81.5-0.4-1.2-0.7
Locomotion velocity, session 70.10.10.1-0.3-0.1-0.3
Locomotion distance, session 70.20.30.50.70.50.4
Stereotopy head waving bouts, day 72.12.42.81.71.51.4
Stereotopy head waving duration, day 70.30.40.70.90.20.7
Locomotion velocity, session 80.50.61.70.4-1.3-0.3
Locomotion distance, session 80.20.20.50.7-0.40.2
Degree of sensitization distance1.11.11.9-1.0-1.4-0.7
Degree of sensitization stereotypy1.41.62.01.21.41.1
Condit. Reinf. active minus inactive responses0.50.50.70.70.70.8
Condit. Reinf. active-inactive response ratio0.60.71.1-1.0-0.5-0.8
Condit. Reinf. active responses3.03.64.61.91.62.1
Condit. Reinf. inactive responses3.74.46.32.21.52.5
Incentive salience index mean4.45.26.32.51.92.4
Condit. Reinf. lever presses10.013.518.74.32.93.6
Time in familiar zone, hab. session 10.70.71.3-0.71.20.4
Time in novel zone, hab. session 14.84.68.8-1.0-3.0-2.0
Total zone transitions, hab. session 10.10.10.10.3-0.30.3
Total locomotion distance, hab. session 10.60.91.80.60.71.3
Locomotion velocity, hab. session 12.02.84.61.51.32.1
Time in familiar zone, hab. session 20.30.30.9-1.0-0.2-0.1
Time in novel zone, hab. session 22.22.23.3-1.0-1.5-1.8
Total zone transitions, hab. session 20.50.61.21.10.10.7
Total locomotion distance, hab. session 20.81.11.61.20.71.3
Locomotion velocity, hab. session 21.21.62.11.30.91.5
Novel to familiar place preference ratio4.34.66.2-1.9-2.0-2.5
Novelty place preference5.65.87.6-2.3-2.2-2.8
Time in novel zone, NPP test6.97.39.2-2.5-2.5-3.0
Total zone transitions, NPP test0.40.61.31.2-0.10.7
Total locomotion distance, NPP test1.72.43.81.91.11.5
Locomotion velocity, NPP test2.43.54.72.21.51.8
Pavlov. Cond. lever latency7.29.112.6-3.5-2.5-3.0
Pavlov. Cond. magazine entry latency0.40.50.70.90.40.8
Pavlov. Cond. change in total contacts2.52.63.61.91.41.5
Pavlov. Cond. index score3.24.05.42.31.52.1
Pavlov. Cond. latency score3.03.95.12.31.62.0
Pavlov. Cond. lever contacts5.76.88.52.92.42.5
Pavlov. Cond. magazine entry number0.70.91.1-1.1-0.6-1.0
Pavlov. Cond. intertrial magazine entries0.30.30.50.60.20.7
Pavlov. Cond. lever-magazine prob. diff.3.13.94.62.21.62.1
Pavlov. Cond. response bias3.13.85.02.21.52.0
Bone: apparent density1.52.53.31.41.81.4
Bone surface0.71.21.61.31.10.9
Bone volume0.81.31.51.21.21.0
Bone: connectivity density1.01.52.60.91.61.1
Bone: cortical apparent density0.20.20.4-0.60.50.3
Bone: cortical area2.13.23.71.71.71.9
Bone: cortical porosity0.40.40.5-0.7-0.6-0.6
Bone: cortical porosity0.00.00.00.00.2-0.0
Bone: cortical thickness1.01.62.90.71.71.2
Bone: cortical thickness0.10.20.3-0.6-0.3-0.3
Bone: cortical tissue density0.20.20.5-0.70.40.2
Bone: elastic displacement3.94.47.6-2.8-1.1-2.1
Bone: elastic work1.41.84.5-2.10.1-1.0
Bone: endosteal estimation0.71.53.01.70.41.1
Bone: endosteal perimeter0.81.63.31.80.51.1
Bone: final force0.81.32.01.40.71.2
Bone: final moment0.50.91.21.10.61.1
Bone: marrow area0.81.63.11.80.51.2
Bone: maximum diameter2.13.85.12.31.42.1
Bone: maximum force2.44.25.52.41.42.2
Bone: maximum moment1.83.23.92.01.32.0
Bone: minimum diameter0.00.00.0-0.10.00.0
Bone: periosteal estimation1.12.33.61.90.91.6
Bone: periosteal perimeter0.30.51.11.10.20.6
Bone: post-yield work1.21.73.41.80.21.3
Bone: stiffness3.25.07.22.71.12.5
Bone: tissue strength0.30.30.40.4-0.70.5
Bone: trabecular number1.62.52.81.41.71.6
Bone: trabecular spacing0.00.00.0-0.20.20.2
Bone: trabecular thickness0.00.00.0-0.2-0.2-0.1
Bone: trabecular tissue density2.02.84.32.10.42.0
Breakpoint value in progressive ratio session0.60.71.3-0.1-0.8-1.2
Distance traveled before self-admin3.53.76.62.61.31.7
Distance traveled after self-admin0.40.51.00.70.21.0
Delta time in closed arm before/after self-admin3.02.94.11.41.72.0
Delta time in open arm before/after self-admin0.60.61.0-0.5-0.8-1.0
Diff in mean of infusions in LGA sessions0.00.00.1-0.3-0.1-0.0
Extinction: sum of active levers before priming2.32.42.5-1.5-1.6-1.5
Active lever presses in extinction session 60.30.30.6-0.5-0.2-0.7
Delta distance traveled before/after self-admin0.90.91.5-1.0-1.2-0.5
Delta ambulatory time before/after self-admin2.12.33.2-1.6-1.8-1.0
Time in closed arm before self-admin2.02.33.2-1.8-0.8-1.7
Time in closed arm after self-admin0.10.10.2-0.50.20.0
Time in open arm before self-admin1.81.94.12.00.51.2
Time in open arm after self-admin1.01.12.11.50.80.7
Sum of active levers in priming session hrs 5-63.53.54.6-1.8-1.6-2.1
Time to tail flick, vehicle, before self-admin1.01.01.7-1.3-0.4-1.1
Time to tail flick, vehicle, after self-admin0.00.00.1-0.10.2-0.3
Time to tail flick, test, before self-admin0.50.50.90.41.00.7
Time to tail flick, test, after self-admin1.41.52.90.51.71.1
Delta time to tail flick, vehicle, before/after SA0.10.10.20.50.00.4
Delta time to tail flick, test, before/after SA0.10.10.1-0.40.2-0.2
Ambulatory time before self-admin2.42.54.82.21.11.2
Ambulatory time after self-admin0.10.10.20.4-0.30.3
Total heroin consumption0.60.81.4-0.5-0.8-1.2
Area under the delay curve0.60.71.0-0.5-0.8-1.0
Delay disc. indifference point, 0s delay1.51.62.1-1.0-1.5-1.4
Delay disc. indifference point, 16s delay1.51.52.7-0.8-1.1-1.6
Delay disc. indifference point, 2s delay0.10.10.1-0.00.30.3
Delay disc. indifference point, 24s delay0.20.20.4-0.4-0.6-0.3
Delay disc. indifference point, 4s delay0.10.10.1-0.2-0.3-0.3
Delay disc. indifference point, 8s delay0.00.00.00.1-0.10.0
Delay discount exponential model param0.50.50.80.50.70.9
Delay discount hyperbolic model param0.40.40.70.40.60.8
Fecal boli incidents, locomotor time 10.50.51.0-1.0-0.5-0.6
Change in fecal boli incidents, locomotor task1.11.12.11.40.70.8
Time >=10cm from walls, locomotor time 10.10.10.20.3-0.4-0.3
Bouts of movement, locomotor time 11.82.02.3-1.5-1.5-1.2
Total resting periods, locomotor time 12.12.43.4-1.8-1.4-1.3
Rest time, locomotor task time 11.01.12.8-1.7-0.7-0.1
Distance moved, locomotor task time 11.61.73.92.00.90.8
Vertical activity count, locomotor time 10.90.92.71.6-0.30.2
Time >=10cm from walls, locomotor time 20.10.10.20.4-0.20.2
Bouts of movement, locomotor time 20.50.60.70.90.60.8
Total resting periods, locomotor time 20.30.30.30.50.50.5
Rest time, locomotor task time 20.40.51.0-1.0-0.5-0.6
Distance moved, locomotor task time 20.30.40.80.50.30.9
Vertical activity count, locomotor time 20.40.40.80.9-0.40.6
Weight adjusted by age0.10.10.40.6-0.0-0.1
Seeking ratio, delayed vs. immediate footshock3.84.45.61.92.42.0
Locomotion in novel chamber0.10.10.3-0.30.50.2
Locomotion in novel chamber post-restriction2.42.83.81.11.82.0
Progressive ratio0.00.00.1-0.10.0-0.3
Food seeking constrained by brief footshock6.57.912.73.62.42.3
Seeking ratio, punishment vs. effort1.82.23.41.81.11.4
Run reversals in cocaine runway, females0.20.20.40.10.40.6
Run reversals in cocaine runway, males0.00.00.1-0.20.2-0.1
Latency to leave start box in cocaine runway0.80.91.40.71.20.9
Latency to leave start box in cocaine runway, F0.00.00.0-0.10.2-0.2
Latency to leave start box in cocaine runway, M1.21.11.91.40.71.0
Cd content in liver0.50.50.80.60.60.9
Co content in liver1.72.02.3-1.2-1.5-1.5
Cu content in liver1.01.21.5-1.2-1.2-0.8
Fe content in liver0.60.71.70.5-1.3-0.4
K content in liver0.40.40.8-0.3-0.9-0.6
Mg content in liver0.30.30.3-0.6-0.5-0.6
Mn content in liver0.30.40.80.20.60.9
Na content in liver2.32.54.2-1.2-2.1-1.3
Rb content in liver5.06.26.9-2.6-2.2-2.6
Se content in liver2.02.54.31.60.82.1
Sr content in liver1.00.91.41.20.41.1
Zn content in liver0.30.30.50.10.70.7