Npr2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000015991 0.04 0.06 6.7e-03 0.01 0.01 0.01 0.01 3.0e-02 2.3e-02 4.6e-02 2.6e-02
2 Brain gene expression ENSRNOG00000015991 0.08 0.05 5.7e-05 0.06 0.05 0.05 0.05 6.1e-06 1.6e-05 2.7e-05 2.4e-05
3 Liver gene expression ENSRNOG00000015991 0.06 0.05 7.4e-04 0.01 0.03 0.03 0.02 4.0e-02 4.8e-04 6.4e-04 1.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail2.16.89.0-3.02.7-2.0
BMI without tail5.110.715.2-3.83.9-1.6
Body weight3.012.517.8-4.24.1-1.6
Epididymis fat weight0.51.12.0-1.11.4-0.3
Glucose1.01.62.3-1.51.5-0.4
Heart weight0.60.91.6-1.11.3-0.1
Left kidney weight0.51.42.3-1.21.50.5
Right kidney weight0.00.10.2-0.10.40.4
Tail length2.36.910.5-3.03.2-1.1
Length with tail0.72.64.3-1.92.10.0
Length without tail0.40.91.00.9-0.91.0
Liver weight, left0.50.81.2-0.71.1-0.8
Liver weight, right0.00.10.10.3-0.10.3
Parametrial fat weight0.20.40.9-0.51.00.2
Retroperitoneal fat weight0.10.30.40.6-0.6-0.3
Intraocular pressure1.92.74.2-2.02.00.1
Extensor digitorum longus weight4.016.122.6-4.74.8-1.8
Soleus weight0.61.64.60.30.52.1
Tibialis anterior weight6.020.732.5-5.35.7-1.4
Tibia length0.20.51.10.20.51.1
Number of licking bursts4.35.06.2-2.52.4-1.7
Food consumed during 24 hour testing period0.70.91.6-1.01.3-0.2
Times rat made contact with spout0.30.40.5-0.60.5-0.7
Mean time between licks in bursts0.40.50.90.9-0.7-0.3
Mean num. licks in bursts2.02.43.21.8-1.80.9
Std. dev. time between licks in bursts0.30.40.50.7-0.70.0
Water consumed over 24 hours0.70.81.0-1.01.0-0.5
Indifference point 0 sec1.52.55.9-0.81.02.4
Indifference point AUC7.48.712.1-3.53.5-1.4
Indifference point function ln k2.53.64.82.1-2.21.2
Indifference point function log k2.53.64.82.1-2.21.2
Delay discounting total patch changes 0 sec1.52.54.4-1.21.32.1
Delay discounting total patch changes 12 sec1.92.54.0-2.01.9-0.4
Delay discounting total patch changes 18 sec0.70.91.6-1.11.20.0
Delay discounting total patch changes 24 sec2.43.04.5-2.12.10.2
Delay discounting total patch changes 6 sec2.63.95.6-2.42.40.8
Delay discounting time to switch 0 sec2.74.26.72.4-2.6-0.0
Delay discounting water rate 0 sec1.93.14.7-1.92.20.9
Delay discounting water rate 12 sec0.20.30.6-0.10.50.8
Delay discounting water rate 18 sec0.30.40.6-0.80.7-0.3
Delay discounting water rate 24 sec0.20.20.6-0.1-0.1-0.8
Delay discounting water rate 6 sec0.60.81.6-0.91.3-0.1
Locomotor activity0.00.00.0-0.10.2-0.1
Locomotor testing distance0.20.30.80.20.10.9
Locomotor testing rearing0.50.81.6-1.01.3-0.1
Light reinforcement 11.42.63.7-1.11.91.8
Light reinforcement 21.92.46.0-0.41.12.5
Reaction time number correct0.20.20.3-0.40.50.6
Reaction time mean minus median2.12.77.5-0.70.2-2.7
Reaction time mean minus median AUC2.12.75.9-1.20.8-2.4
Reaction time num false alarms0.20.30.8-0.1-0.1-0.9
Reaction time num false alarms AUC0.30.40.5-0.70.6-0.6
Reaction time trials correct on left0.20.20.3-0.40.50.6
Reaction time trials on left0.10.20.4-0.30.40.6
Reaction time mean1.62.22.51.3-1.6-1.5
Reaction time mean AUC1.82.42.91.4-1.7-1.5
Median of all reaction times2.33.14.72.1-2.2-0.5
Reaction time omissions1.21.62.61.5-1.60.1
Reaction time false alarm rate0.20.20.50.1-0.4-0.7
Reaction time premature initiation rate2.02.74.51.9-2.10.2
Reaction time premature initiations1.21.72.71.5-1.60.5
Std. dev. reaction times1.41.95.40.2-0.5-2.3
Reaction time trials completed0.10.20.4-0.30.40.6
Reaction time trials AUC0.10.20.3-0.30.40.5
Social response proportion2.02.23.31.8-1.8-0.5
Social responses0.60.70.8-0.90.8-0.9
Social time0.10.20.30.5-0.3-0.3
Conditioned locomotion0.60.72.20.1-0.01.5
Cocaine response after cond. corrected2.52.84.91.5-1.12.2
Cocaine response after cond. not corrected2.12.34.51.3-0.82.1
Cocaine response before conditioning0.91.11.3-1.01.1-0.9
Saline control response0.81.12.0-1.01.40.6
Condit. Reinf. active minus inactive responses0.70.91.0-1.01.0-0.7
Condit. Reinf. active-inactive response ratio0.20.20.3-0.40.2-0.6
Condit. Reinf. active responses2.23.14.0-2.02.0-1.1
Condit. Reinf. inactive responses3.03.84.3-2.02.1-1.7
Condit. Reinf. lever presses2.63.64.4-1.91.7-2.1
Condit. Reinf. lever reinforcers received2.53.64.6-2.12.2-1.3
Pavlov. Cond. lever latency3.04.15.02.0-1.82.2
Pavlov. Cond. magazine entry latency0.40.50.60.8-0.7-0.5
Pavlov. Cond. change in total contacts1.72.35.6-0.90.7-2.4
Pavlov. Cond. index score0.70.92.5-0.40.3-1.6
Pavlov. Cond. latency score0.91.13.0-0.60.4-1.7
Pavlov. Cond. lever contacts1.52.12.6-1.51.3-1.6
Pavlov. Cond. magazine entry number0.70.92.60.00.11.6
Pavlov. Cond. intertrial magazine entries0.40.50.7-0.90.80.1
Pavlov. Cond. lever-magazine prob. diff.0.81.02.8-0.40.3-1.7
Pavlov. Cond. response bias0.91.22.3-0.80.7-1.5
Conditioned reinforcement - actives0.10.10.2-0.5-0.0-0.2
Conditioned reinforcement - inactives0.10.10.20.3-0.10.4
Conditioned locomotion0.10.20.4-0.60.30.1
Intermittent access intake day 1-15 change1.11.12.6-0.70.4-1.6
Intermittent access intake escalation1.41.42.4-1.10.8-1.5
Intermittent access intake escalation 21.81.83.9-1.00.7-2.0
Intermitt. access day 1 inactive lever presses0.50.60.9-0.90.9-0.2
Intermitt. access day 15 inactive lever presses0.20.20.6-0.10.20.8
Intermitt. access escalation Index1.11.01.9-1.01.40.3
Intermittent access day 1 total infusions1.11.33.20.5-0.61.8
Intermittent access day 15 total infusions0.30.30.7-0.80.5-0.1
Intermittent access terminal intake (last 3 days)0.40.40.8-0.90.70.0
Intermittent access total infusions0.60.61.0-1.00.80.4
Intermittent access day 1 locomotion1.41.42.60.8-1.01.6
Intermittent access day 15 total locomotion0.90.91.20.8-1.01.1
Intermittent access total locomotion0.50.61.20.6-1.10.5
Intermittent access standard deviation0.30.30.4-0.60.4-0.6
Cocaine induced anxiety1.11.21.81.3-1.10.8
Post-drug Anxiety0.30.40.8-0.50.9-0.3
Baseline Anxiety2.02.12.8-1.41.2-1.7
Lifetime Intake0.91.01.2-0.91.01.1
Incentive Sensitization - Responses0.30.30.70.20.00.9
Incentive Sensitization - Breakpoint0.30.30.90.3-0.10.9
Progressive ratio test 1 active lever presses0.90.92.3-0.40.41.5
Progressive ratio test 1 breakpoint0.80.81.9-0.60.61.4
Progressive ratio test 1 inactive lever presses1.41.53.3-0.51.01.8
Progressive ratio test 2 active lever presses0.80.92.60.00.11.6
Progressive ratio test 2 breakpoint0.91.02.80.3-0.11.7
Progressive ratio test 2 inactive lever presses0.10.20.2-0.40.40.4
Total sessions with >9 infusions1.31.44.20.10.32.1
Short access day 1 total inactive lever presses1.31.52.2-1.51.40.5
Short access day 10 total inactive lever presses0.20.20.4-0.40.6-0.3
Short access day 1 total infusions1.61.72.5-1.01.31.6
Short access day 10 total infusions1.01.11.9-0.70.91.4
Short access total infusions1.21.33.4-0.30.61.8
Short access day 1 locomotion0.50.51.30.4-0.31.1
Short access day 10 total locomotion0.60.71.40.8-1.2-0.2
Short access total locomotion0.30.30.8-0.10.20.9
Compulsive drug intake0.20.20.5-0.70.4-0.3
One hour access (0.3 mA shock)0.50.60.8-0.90.80.7
One hour access (shock baseline)0.70.81.3-0.60.81.1
Number of responses in last shaping day1.41.54.0-0.10.62.0
Context. condit. distance diff. score0.10.10.20.3-0.50.0
Locomotion velocity, session 12.52.76.3-0.61.22.5
Locomotion distance, session 10.60.81.3-0.60.91.1
Locomotion velocity, session 22.32.73.3-1.81.5-1.5
Locomotion distance, session 21.72.44.3-1.72.1-0.2
Locomotion velocity, session 30.50.61.5-0.10.51.2
Locomotion distance, session 32.02.23.5-1.71.90.3
Stereotopy head waving bouts, day 30.60.72.00.4-0.01.4
Stereotopy head waving duration, day 30.50.61.10.7-0.51.0
Locomotion velocity, session 70.00.00.10.3-0.30.1
Locomotion distance, session 70.20.20.4-0.50.60.1
Stereotopy head waving bouts, day 71.82.13.2-1.81.8-0.1
Stereotopy head waving duration, day 70.50.61.1-0.81.00.1
Locomotion velocity, session 80.20.20.40.00.40.7
Locomotion distance, session 80.20.30.5-0.40.70.6
Degree of sensitization distance1.01.01.51.2-1.2-0.0
Degree of sensitization stereotypy1.11.21.8-1.41.3-0.2
Condit. Reinf. active minus inactive responses0.60.60.7-0.80.7-0.8
Condit. Reinf. active-inactive response ratio0.40.50.80.9-0.80.0
Condit. Reinf. active responses2.83.44.2-2.01.8-1.7
Condit. Reinf. inactive responses3.74.34.7-2.22.0-2.1
Incentive salience index mean3.94.76.5-2.52.4-1.3
Condit. Reinf. lever presses8.811.916.9-4.14.1-1.4
Time in familiar zone, hab. session 11.21.12.40.4-0.9-1.5
Time in novel zone, hab. session 12.52.44.81.4-0.82.2
Total zone transitions, hab. session 10.00.00.1-0.10.1-0.3
Total locomotion distance, hab. session 10.91.23.0-0.70.4-1.7
Locomotion velocity, hab. session 11.92.73.9-1.61.3-2.0
Time in familiar zone, hab. session 20.90.91.00.8-1.0-1.0
Time in novel zone, hab. session 22.22.34.71.1-0.92.2
Total zone transitions, hab. session 20.50.61.1-0.81.00.2
Total locomotion distance, hab. session 20.70.91.2-1.11.0-0.7
Locomotion velocity, hab. session 21.01.31.7-1.31.2-0.9
Novel to familiar place preference ratio3.84.04.92.0-1.82.2
Novelty place preference4.95.15.32.3-2.22.3
Time in novel zone, NPP test5.96.26.72.6-2.42.4
Total zone transitions, NPP test0.60.91.6-1.01.30.3
Total locomotion distance, NPP test1.52.13.3-1.81.80.0
Locomotion velocity, NPP test2.02.84.2-2.12.0-0.3
Pavlov. Cond. lever latency6.48.211.63.3-3.41.3
Pavlov. Cond. magazine entry latency0.50.60.7-0.70.8-0.9
Pavlov. Cond. change in total contacts2.42.53.7-1.81.9-0.7
Pavlov. Cond. index score3.13.94.8-2.22.2-1.5
Pavlov. Cond. latency score2.83.54.5-2.12.1-1.3
Pavlov. Cond. lever contacts4.85.77.8-2.82.8-1.2
Pavlov. Cond. magazine entry number0.81.01.21.0-1.10.9
Pavlov. Cond. intertrial magazine entries0.20.30.3-0.60.5-0.5
Pavlov. Cond. lever-magazine prob. diff.3.03.74.3-2.12.0-1.7
Pavlov. Cond. response bias2.93.64.7-2.12.2-1.2
Bone: apparent density1.11.92.4-1.61.5-1.0
Bone surface0.61.11.8-1.21.3-0.1
Bone volume0.61.01.6-1.21.3-0.4
Bone: connectivity density0.60.91.2-1.10.9-0.9
Bone: cortical apparent density0.50.71.70.3-0.4-1.3
Bone: cortical area2.33.53.7-1.91.9-1.8
Bone: cortical porosity0.40.40.70.7-0.80.3
Bone: cortical porosity0.00.00.0-0.0-0.10.2
Bone: cortical thickness1.01.62.6-1.11.0-1.6
Bone: cortical thickness0.10.10.20.4-0.3-0.4
Bone: cortical tissue density0.40.61.40.4-0.5-1.2
Bone: elastic displacement3.74.26.72.4-2.60.5
Bone: elastic work1.92.43.61.5-1.9-1.1
Bone: endosteal estimation0.91.83.2-1.51.8-0.2
Bone: endosteal perimeter0.92.03.4-1.61.80.2
Bone: final force1.32.12.8-1.41.7-1.2
Bone: final moment1.01.72.0-1.21.4-1.3
Bone: marrow area0.92.03.3-1.61.8-0.4
Bone: maximum diameter2.23.95.0-2.22.2-1.4
Bone: maximum force2.84.96.2-2.32.5-1.8
Bone: maximum moment2.34.04.5-2.02.1-1.8
Bone: minimum diameter0.00.10.10.1-0.2-0.4
Bone: periosteal estimation1.42.94.3-1.92.1-1.0
Bone: periosteal perimeter0.40.71.3-0.91.10.2
Bone: post-yield work1.21.72.8-1.51.7-0.3
Bone: stiffness4.06.37.8-2.62.8-2.1
Bone: tissue strength0.40.41.1-0.20.4-1.0
Bone: trabecular number1.31.92.2-1.51.3-1.3
Bone: trabecular spacing0.10.10.40.1-0.2-0.6
Bone: trabecular thickness0.10.10.10.3-0.4-0.0
Bone: trabecular tissue density2.43.34.5-1.92.1-1.4
Breakpoint value in progressive ratio session1.21.43.90.5-0.22.0
Distance traveled before self-admin3.74.06.6-2.32.6-0.1
Distance traveled after self-admin0.80.91.4-0.70.8-1.2
Delta time in closed arm before/after self-admin3.13.04.3-1.71.3-2.1
Delta time in open arm before/after self-admin0.60.61.00.7-0.41.0
Diff in mean of infusions in LGA sessions0.00.00.10.2-0.0-0.3
Extinction: sum of active levers before priming1.71.72.51.5-1.60.7
Active lever presses in extinction session 60.50.40.60.5-0.70.8
Delta distance traveled before/after self-admin0.60.61.01.0-0.9-0.4
Delta ambulatory time before/after self-admin1.51.62.51.6-1.5-0.2
Time in closed arm before self-admin2.22.53.21.8-1.71.2
Time in closed arm after self-admin0.20.20.20.3-0.5-0.4
Time in open arm before self-admin2.02.13.5-1.71.90.0
Time in open arm after self-admin1.21.32.1-1.31.40.5
Sum of active levers in priming session hrs 5-63.53.53.71.8-1.81.9
Time to tail flick, vehicle, before self-admin1.11.11.61.2-1.20.6
Time to tail flick, vehicle, after self-admin0.00.00.10.00.10.4
Time to tail flick, test, before self-admin0.20.20.4-0.60.2-0.5
Time to tail flick, test, after self-admin0.80.91.4-0.90.6-1.2
Delta time to tail flick, vehicle, before/after SA0.20.20.2-0.40.5-0.3
Delta time to tail flick, test, before/after SA0.00.00.10.2-0.1-0.1
Ambulatory time before self-admin2.93.05.0-2.02.20.4
Ambulatory time after self-admin0.10.10.2-0.40.4-0.2
Total heroin consumption0.91.12.70.7-0.41.6
Area under the delay curve0.50.50.90.7-0.51.0
Delay disc. indifference point, 0s delay1.31.41.61.3-1.11.2
Delay disc. indifference point, 16s delay1.91.94.11.1-0.72.0
Delay disc. indifference point, 2s delay0.10.10.3-0.1-0.1-0.6
Delay disc. indifference point, 24s delay0.10.10.20.4-0.30.1
Delay disc. indifference point, 4s delay0.10.10.10.3-0.20.2
Delay disc. indifference point, 8s delay0.00.00.0-0.10.2-0.1
Delay discount exponential model param0.40.40.8-0.60.4-0.9
Delay discount hyperbolic model param0.30.40.7-0.50.3-0.8
Fecal boli incidents, locomotor time 10.60.71.30.8-1.2-0.1
Change in fecal boli incidents, locomotor task1.21.11.9-1.01.40.7
Time >=10cm from walls, locomotor time 10.40.41.1-0.10.31.1
Bouts of movement, locomotor time 11.61.72.61.5-1.60.5
Total resting periods, locomotor time 12.02.23.71.7-1.90.1
Rest time, locomotor task time 12.52.83.81.3-1.9-1.7
Distance moved, locomotor task time 12.32.54.1-1.52.01.0
Vertical activity count, locomotor time 11.91.92.8-1.01.71.4
Time >=10cm from walls, locomotor time 20.10.10.1-0.30.40.0
Bouts of movement, locomotor time 20.50.50.7-0.90.8-0.4
Total resting periods, locomotor time 20.20.20.3-0.50.4-0.3
Rest time, locomotor task time 20.80.91.61.0-1.20.1
Distance moved, locomotor task time 20.70.81.6-0.60.7-1.2
Vertical activity count, locomotor time 20.50.51.0-0.71.0-0.3
Weight adjusted by age0.50.51.2-0.40.41.1
Seeking ratio, delayed vs. immediate footshock3.13.55.0-2.22.0-1.3
Locomotion in novel chamber0.20.30.80.0-0.2-0.9
Locomotion in novel chamber post-restriction2.42.95.4-1.41.1-2.3
Progressive ratio0.00.00.00.1-0.10.2
Food seeking constrained by brief footshock6.47.812.7-3.33.60.3
Seeking ratio, punishment vs. effort1.61.93.0-1.71.7-0.1
Run reversals in cocaine runway, females0.40.41.1-0.20.3-1.0
Run reversals in cocaine runway, males0.00.00.10.1-0.3-0.0
Latency to leave start box in cocaine runway0.60.70.8-0.90.9-0.7
Latency to leave start box in cocaine runway, F0.00.00.10.10.00.3
Latency to leave start box in cocaine runway, M1.31.22.2-1.21.5-0.1
Cd content in liver1.01.12.0-0.80.8-1.4
Co content in liver1.21.41.81.3-1.01.2
Cu content in liver0.91.11.61.3-1.3-0.4
Fe content in liver0.60.71.7-0.10.71.3
K content in liver0.40.40.80.5-0.40.9
Mg content in liver0.50.60.70.7-0.90.7
Mn content in liver0.40.41.1-0.40.2-1.1
Na content in liver1.11.22.21.5-1.20.2
Rb content in liver3.74.66.32.5-2.31.5
Se content in liver2.12.63.6-1.51.4-1.9
Sr content in liver0.60.50.6-0.80.7-0.7
Zn content in liver0.30.41.1-0.30.0-1.0