Tmem8b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000015664 0.05 0.04 8.5e-06 0.06 0.05 0.07 0.06 5.9e-07 3.9e-06 5.0e-08 9.2e-07
2 IL gene expression ENSRNOG00000015664 0.11 0.08 3.7e-03 0.14 0.1 0.12 0.06 2.8e-04 2.5e-03 7.5e-04 1.6e-02
3 PL gene expression ENSRNOG00000015664 0.07 0.04 1.8e-06 0.06 0.06 0.06 0.06 5.2e-05 1.1e-05 1.8e-05 2.1e-05
4 PL intron excision ratio chr5:57939982:57940061 0.04 0.03 4.4e-03 0.02 0.03 0.01 0.02 1.9e-02 4.5e-03 7.7e-02 1.6e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail3.09.612.7-2.9-3.6-3.2-2.7
BMI without tail4.18.613.8-2.7-2.8-3.7-2.3
Body weight2.912.118.4-3.1-3.7-4.3-2.6
Epididymis fat weight0.10.30.80.30.1-0.9-0.4
Glucose0.71.12.2-0.7-1.2-1.5-0.8
Heart weight0.20.31.0-0.3-0.5-1.0-0.3
Left kidney weight0.20.51.5-0.3-0.7-1.20.1
Right kidney weight0.10.20.50.20.70.10.4
Tail length1.13.47.1-1.8-1.1-2.7-1.5
Length with tail0.20.82.9-0.4-0.4-1.7-0.3
Length without tail0.30.81.11.00.60.81.0
Liver weight, left0.20.30.50.70.6-0.4-0.6
Liver weight, right0.40.71.21.11.10.50.6
Parametrial fat weight0.00.10.20.10.2-0.40.1
Retroperitoneal fat weight0.10.30.50.50.70.70.0
Intraocular pressure1.72.44.3-1.6-1.7-2.1-0.5
Extensor digitorum longus weight3.514.122.2-3.5-3.7-4.7-2.8
Soleus weight1.13.25.01.72.20.62.2
Tibialis anterior weight4.013.626.0-3.2-3.5-5.1-2.5
Tibia length0.72.13.61.71.90.61.3
Number of licking bursts4.14.86.1-1.9-2.3-2.5-2.1
Food consumed during 24 hour testing period0.20.20.8-0.2-0.2-0.9-0.3
Times rat made contact with spout0.60.71.3-0.4-1.1-0.7-0.9
Mean time between licks in bursts1.01.43.20.91.81.30.3
Mean num. licks in bursts1.62.02.91.31.31.71.2
Std. dev. time between licks in bursts0.40.51.10.31.00.90.3
Water consumed over 24 hours0.80.91.5-0.5-1.2-1.1-0.8
Indifference point 0 sec0.71.12.5-0.1-0.8-1.11.6
Indifference point AUC6.88.011.6-3.2-2.5-3.4-2.1
Indifference point function ln k2.33.34.21.91.72.11.6
Indifference point function log k2.33.34.21.91.72.11.6
Delay discounting total patch changes 0 sec0.81.32.1-0.4-1.2-1.51.2
Delay discounting total patch changes 12 sec2.63.55.2-1.6-2.3-2.2-1.1
Delay discounting total patch changes 18 sec0.50.71.3-0.9-0.8-1.1-0.3
Delay discounting total patch changes 24 sec2.43.15.0-1.8-1.9-2.2-0.6
Delay discounting total patch changes 6 sec2.43.66.5-1.9-2.1-2.6-0.2
Delay discounting time to switch 0 sec2.33.56.22.01.82.50.7
Delay discounting water rate 0 sec1.72.75.0-1.2-2.1-2.2-0.1
Delay discounting water rate 12 sec0.10.20.30.5-0.1-0.20.6
Delay discounting water rate 18 sec0.91.22.7-0.7-1.6-1.0-0.7
Delay discounting water rate 24 sec0.40.50.8-0.6-0.9-0.3-0.9
Delay discounting water rate 6 sec0.30.40.9-0.1-0.7-1.0-0.4
Locomotor activity0.00.00.1-0.10.3-0.0-0.0
Locomotor testing distance0.40.61.20.71.10.30.9
Locomotor testing rearing0.10.20.6-0.20.0-0.8-0.2
Light reinforcement 10.61.22.01.10.9-0.81.4
Light reinforcement 21.41.84.51.11.2-0.32.1
Reaction time number correct0.10.10.20.0-0.4-0.40.3
Reaction time mean minus median1.92.45.8-1.4-1.2-0.6-2.4
Reaction time mean minus median AUC2.22.85.2-1.7-1.4-1.1-2.3
Reaction time num false alarms0.30.30.8-0.9-0.2-0.1-0.8
Reaction time num false alarms AUC0.40.61.1-1.0-0.6-0.7-0.7
Reaction time trials correct on left0.10.10.20.0-0.4-0.40.3
Reaction time trials on left0.10.10.10.1-0.3-0.30.4
Reaction time mean0.81.12.20.71.11.5-0.8
Reaction time mean AUC0.91.22.40.71.11.6-0.7
Median of all reaction times2.23.05.11.72.02.30.3
Reaction time omissions1.41.82.91.11.71.70.7
Reaction time false alarm rate0.10.20.4-0.60.00.1-0.5
Reaction time premature initiation rate1.11.52.71.70.41.60.5
Reaction time premature initiations0.71.02.31.50.11.20.6
Std. dev. reaction times0.60.93.0-0.60.10.4-1.7
Reaction time trials completed0.10.10.10.1-0.3-0.30.4
Reaction time trials AUC0.10.10.10.1-0.3-0.30.3
Social response proportion2.22.44.01.41.92.00.3
Social responses0.30.40.7-0.7-0.3-0.7-0.8
Social time1.11.44.00.82.01.00.3
Conditioned locomotion0.30.41.30.50.1-0.01.2
Cocaine response after cond. corrected3.03.35.11.91.61.42.2
Cocaine response after cond. not corrected3.33.75.11.92.01.42.3
Cocaine response before conditioning0.40.50.8-0.6-0.2-0.8-0.9
Saline control response0.20.30.80.4-0.2-0.90.4
Condit. Reinf. active minus inactive responses0.81.01.2-1.0-1.1-1.0-0.9
Condit. Reinf. active-inactive response ratio0.50.50.8-0.7-0.9-0.5-0.7
Condit. Reinf. active responses2.02.73.6-1.6-1.6-1.9-1.5
Condit. Reinf. inactive responses2.63.23.7-1.7-1.6-1.9-1.9
Condit. Reinf. lever presses3.04.15.0-2.2-1.8-1.8-2.2
Condit. Reinf. lever reinforcers received2.43.34.2-1.9-1.7-2.0-1.6
Pavlov. Cond. lever latency3.24.35.62.21.81.92.4
Pavlov. Cond. magazine entry latency0.60.61.30.51.11.00.0
Pavlov. Cond. change in total contacts1.41.94.5-1.4-0.9-0.8-2.1
Pavlov. Cond. index score0.50.61.8-0.8-0.3-0.3-1.3
Pavlov. Cond. latency score0.81.02.3-1.0-0.6-0.5-1.5
Pavlov. Cond. lever contacts1.62.22.8-1.7-1.2-1.4-1.7
Pavlov. Cond. magazine entry number0.40.51.60.50.1-0.11.3
Pavlov. Cond. intertrial magazine entries0.50.71.3-0.5-1.1-1.0-0.3
Pavlov. Cond. lever-magazine prob. diff.0.50.71.9-0.8-0.3-0.2-1.4
Pavlov. Cond. response bias0.71.01.9-1.2-0.6-0.7-1.4
Conditioned reinforcement - actives1.01.02.0-1.4-1.1-0.7-0.5
Conditioned reinforcement - inactives0.00.00.1-0.0-0.00.20.3
Conditioned locomotion0.91.01.8-1.2-1.3-0.9-0.3
Intermittent access intake day 1-15 change1.21.22.4-0.7-1.1-0.7-1.6
Intermittent access intake escalation1.61.62.6-0.9-1.4-1.1-1.6
Intermittent access intake escalation 22.52.54.1-1.3-1.7-1.1-2.0
Intermitt. access day 1 inactive lever presses0.50.61.0-0.4-0.9-1.0-0.5
Intermitt. access day 15 inactive lever presses0.10.10.40.30.1-0.20.6
Intermitt. access escalation Index0.50.51.00.7-0.6-1.0-0.0
Intermittent access day 1 total infusions0.50.62.0-0.30.10.31.4
Intermittent access day 15 total infusions1.11.22.1-1.2-1.5-1.0-0.5
Intermittent access terminal intake (last 3 days)1.41.52.8-1.3-1.7-1.2-0.5
Intermittent access total infusions1.61.82.9-1.5-1.7-1.3-0.2
Intermittent access day 1 locomotion0.60.61.7-0.60.00.51.3
Intermittent access day 15 total locomotion0.30.30.7-0.2-0.30.50.9
Intermittent access total locomotion0.30.30.5-0.7-0.70.20.3
Intermittent access standard deviation0.60.60.8-0.9-0.9-0.6-0.7
Cocaine induced anxiety1.41.61.91.41.31.31.1
Post-drug Anxiety0.10.10.40.30.6-0.2-0.1
Baseline Anxiety1.61.72.8-1.2-1.0-1.2-1.7
Lifetime Intake1.21.31.9-1.3-1.4-1.20.4
Incentive Sensitization - Responses0.20.20.50.60.20.10.7
Incentive Sensitization - Breakpoint0.30.30.60.70.20.20.8
Progressive ratio test 1 active lever presses0.80.81.5-0.6-1.2-0.80.8
Progressive ratio test 1 breakpoint0.90.91.8-0.7-1.3-0.90.7
Progressive ratio test 1 inactive lever presses0.50.61.50.3-0.4-0.71.2
Progressive ratio test 2 active lever presses0.40.41.3-0.2-0.4-0.21.1
Progressive ratio test 2 breakpoint0.40.41.50.0-0.3-0.01.2
Progressive ratio test 2 inactive lever presses0.40.40.8-0.9-0.7-0.60.1
Total sessions with >9 infusions0.60.62.5-0.20.0-0.11.6
Short access day 1 total inactive lever presses1.51.73.2-0.8-1.8-1.7-0.2
Short access day 10 total inactive lever presses0.10.10.30.5-0.1-0.4-0.3
Short access day 1 total infusions0.80.81.3-0.6-0.9-1.20.9
Short access day 10 total infusions0.60.70.9-0.7-0.9-0.90.8
Short access total infusions0.50.61.6-0.4-0.4-0.51.3
Short access day 1 locomotion0.20.20.80.1-0.10.30.9
Short access day 10 total locomotion0.20.20.5-0.60.00.7-0.1
Short access total locomotion0.20.20.3-0.5-0.3-0.20.6
Compulsive drug intake0.30.30.5-0.6-0.5-0.7-0.4
One hour access (0.3 mA shock)1.01.12.2-1.5-1.1-1.10.1
One hour access (shock baseline)0.70.81.0-1.0-1.0-0.90.5
Number of responses in last shaping day0.80.82.50.90.2-0.21.6
Context. condit. distance diff. score0.00.00.00.0-0.20.2-0.0
Locomotion velocity, session 11.11.23.80.60.5-0.62.0
Locomotion distance, session 10.20.30.80.20.4-0.50.9
Locomotion velocity, session 23.03.54.9-2.2-1.7-1.8-1.8
Locomotion distance, session 20.40.61.9-0.6-0.1-1.4-0.4
Locomotion velocity, session 30.30.41.10.60.4-0.11.0
Locomotion distance, session 31.61.83.5-0.9-1.6-1.9-0.3
Stereotopy head waving bouts, day 31.01.22.01.11.20.51.4
Stereotopy head waving duration, day 30.91.11.31.01.10.81.2
Locomotion velocity, session 70.00.00.10.20.20.20.2
Locomotion distance, session 70.10.20.3-0.4-0.4-0.6-0.1
Stereotopy head waving bouts, day 71.71.93.4-1.1-1.6-1.8-0.6
Stereotopy head waving duration, day 70.20.20.6-0.2-0.4-0.8-0.1
Locomotion velocity, session 80.60.71.60.71.30.30.8
Locomotion distance, session 80.10.10.20.20.4-0.30.5
Degree of sensitization distance1.11.12.10.61.41.40.4
Degree of sensitization stereotypy1.41.52.5-0.9-1.6-1.5-0.7
Condit. Reinf. active minus inactive responses0.50.60.7-0.9-0.5-0.7-0.9
Condit. Reinf. active-inactive response ratio0.40.50.80.80.60.90.3
Condit. Reinf. active responses2.83.44.1-2.0-1.5-1.9-1.8
Condit. Reinf. inactive responses3.54.14.8-2.2-1.6-2.0-2.2
Incentive salience index mean3.64.36.0-2.3-1.8-2.5-1.7
Condit. Reinf. lever presses7.49.915.8-3.3-2.9-4.0-2.2
Time in familiar zone, hab. session 11.11.02.0-0.9-1.20.2-1.4
Time in novel zone, hab. session 16.05.98.82.33.01.72.5
Total zone transitions, hab. session 10.00.00.1-0.30.20.0-0.2
Total locomotion distance, hab. session 10.91.42.5-1.4-0.7-0.6-1.6
Locomotion velocity, hab. session 12.13.14.1-2.0-1.4-1.5-2.0
Time in familiar zone, hab. session 20.30.30.6-0.10.10.8-0.6
Time in novel zone, hab. session 22.82.94.61.81.61.12.1
Total zone transitions, hab. session 20.10.20.5-0.4-0.1-0.70.0
Total locomotion distance, hab. session 20.70.91.2-1.1-0.7-1.0-0.9
Locomotion velocity, hab. session 21.01.31.7-1.3-1.0-1.2-1.1
Novel to familiar place preference ratio4.64.85.92.22.12.02.4
Novelty place preference5.55.76.42.42.32.32.5
Time in novel zone, NPP test6.97.27.82.72.72.62.8
Total zone transitions, NPP test0.10.20.7-0.20.0-0.80.1
Total locomotion distance, NPP test1.01.42.9-1.2-1.0-1.7-0.4
Locomotion velocity, NPP test1.72.54.3-1.6-1.5-2.1-0.8
Pavlov. Cond. lever latency5.26.710.62.52.53.32.0
Pavlov. Cond. magazine entry latency0.40.50.7-0.8-0.3-0.6-0.8
Pavlov. Cond. change in total contacts1.81.93.2-1.2-1.4-1.8-1.1
Pavlov. Cond. index score2.53.24.1-1.9-1.5-2.0-1.7
Pavlov. Cond. latency score2.43.14.0-1.9-1.5-2.0-1.6
Pavlov. Cond. lever contacts4.65.57.7-2.3-2.4-2.8-1.8
Pavlov. Cond. magazine entry number0.60.70.90.80.60.91.0
Pavlov. Cond. intertrial magazine entries0.20.30.4-0.6-0.3-0.5-0.5
Pavlov. Cond. lever-magazine prob. diff.2.83.54.0-2.0-1.6-1.9-1.9
Pavlov. Cond. response bias2.53.04.2-1.8-1.6-2.0-1.5
Bone: apparent density1.42.33.1-1.3-1.8-1.7-1.4
Bone surface0.50.81.6-0.6-1.0-1.3-0.5
Bone volume0.61.01.5-0.7-1.2-1.2-0.8
Bone: connectivity density1.01.62.2-1.2-1.5-1.2-1.1
Bone: cortical apparent density0.30.41.2-0.2-0.40.2-1.1
Bone: cortical area2.03.13.9-1.4-1.7-1.9-2.0
Bone: cortical porosity0.20.30.50.30.50.70.5
Bone: cortical porosity0.00.00.1-0.3-0.2-0.10.1
Bone: cortical thickness1.22.03.1-1.0-1.7-1.2-1.8
Bone: cortical thickness0.20.20.40.60.30.4-0.2
Bone: cortical tissue density0.20.30.9-0.1-0.30.3-0.9
Bone: elastic displacement2.02.34.81.61.12.20.9
Bone: elastic work0.50.61.90.50.01.4-0.7
Bone: endosteal estimation0.30.61.8-0.6-0.4-1.3-0.4
Bone: endosteal perimeter0.30.72.0-0.7-0.5-1.4-0.1
Bone: final force0.60.91.5-0.7-0.6-1.2-1.2
Bone: final moment0.50.81.5-0.5-0.5-1.0-1.2
Bone: marrow area0.40.82.0-0.7-0.5-1.4-0.6
Bone: maximum diameter1.62.94.2-1.6-1.5-2.0-1.7
Bone: maximum force1.83.24.4-1.6-1.4-2.1-2.0
Bone: maximum moment1.52.63.7-1.4-1.2-1.8-1.9
Bone: minimum diameter0.00.00.1-0.20.00.1-0.3
Bone: periosteal estimation0.71.52.8-0.9-0.9-1.7-1.2
Bone: periosteal perimeter0.10.20.7-0.2-0.2-0.8-0.0
Bone: post-yield work0.50.61.6-0.9-0.3-1.3-0.4
Bone: stiffness2.13.44.8-1.7-1.1-2.2-2.2
Bone: tissue strength0.20.20.4-0.10.60.1-0.7
Bone: trabecular number1.62.42.5-1.6-1.6-1.5-1.6
Bone: trabecular spacing0.10.10.3-0.1-0.20.1-0.5
Bone: trabecular thickness0.00.00.1-0.30.10.20.0
Bone: trabecular tissue density1.01.42.3-1.2-0.3-1.5-1.3
Breakpoint value in progressive ratio session1.11.33.10.91.00.41.8
Distance traveled before self-admin1.82.05.0-0.9-1.3-2.2-0.7
Distance traveled after self-admin0.40.41.1-0.5-0.2-0.5-1.0
Delta time in closed arm before/after self-admin3.23.14.7-1.4-1.7-1.6-2.2
Delta time in open arm before/after self-admin0.80.71.20.41.00.71.1
Diff in mean of infusions in LGA sessions0.00.00.10.20.30.2-0.1
Extinction: sum of active levers before priming2.02.02.61.31.61.61.1
Active lever presses in extinction session 60.20.20.50.00.20.40.7
Delta distance traveled before/after self-admin0.70.81.40.71.11.20.1
Delta ambulatory time before/after self-admin1.71.83.21.11.71.80.4
Time in closed arm before self-admin1.31.52.60.90.91.61.3
Time in closed arm after self-admin0.10.10.1-0.0-0.30.2-0.4
Time in open arm before self-admin0.80.92.5-0.5-0.8-1.6-0.4
Time in open arm after self-admin0.60.71.7-0.8-0.7-1.30.0
Sum of active levers in priming session hrs 5-63.02.94.21.41.61.72.1
Time to tail flick, vehicle, before self-admin0.60.61.10.90.51.00.7
Time to tail flick, vehicle, after self-admin0.10.10.40.6-0.1-0.00.3
Time to tail flick, test, before self-admin0.50.50.7-0.7-0.9-0.7-0.7
Time to tail flick, test, after self-admin2.02.02.6-1.6-1.6-1.1-1.4
Delta time to tail flick, vehicle, before/after SA0.10.10.10.2-0.1-0.3-0.3
Delta time to tail flick, test, before/after SA0.00.00.0-0.2-0.20.2-0.1
Ambulatory time before self-admin1.41.53.9-0.9-1.0-2.0-0.2
Ambulatory time after self-admin0.10.10.1-0.40.3-0.2-0.1
Total heroin consumption1.11.32.41.30.90.61.5
Area under the delay curve0.80.91.10.91.00.71.1
Delay disc. indifference point, 0s delay2.12.33.01.71.61.31.4
Delay disc. indifference point, 16s delay2.12.13.91.21.41.02.0
Delay disc. indifference point, 2s delay0.10.10.3-0.0-0.4-0.1-0.5
Delay disc. indifference point, 24s delay0.20.20.30.40.60.50.2
Delay disc. indifference point, 4s delay0.10.10.20.50.40.30.3
Delay disc. indifference point, 8s delay0.00.00.1-0.20.3-0.0-0.0
Delay discount exponential model param0.70.70.9-0.8-0.9-0.6-1.0
Delay discount hyperbolic model param0.60.60.8-0.8-0.8-0.6-0.9
Fecal boli incidents, locomotor time 10.20.30.70.30.50.90.2
Change in fecal boli incidents, locomotor task0.50.51.2-0.5-0.7-1.10.2
Time >=10cm from walls, locomotor time 10.30.30.70.70.2-0.10.9
Bouts of movement, locomotor time 11.31.42.50.71.41.60.9
Total resting periods, locomotor time 11.31.53.10.71.41.80.6
Rest time, locomotor task time 10.80.92.0-0.40.71.4-1.0
Distance moved, locomotor task time 10.80.92.5-0.3-1.0-1.60.4
Vertical activity count, locomotor time 10.50.51.00.5-0.1-1.01.0
Time >=10cm from walls, locomotor time 20.00.00.1-0.20.1-0.30.0
Bouts of movement, locomotor time 20.40.40.6-0.7-0.6-0.8-0.5
Total resting periods, locomotor time 20.20.20.3-0.5-0.5-0.5-0.4
Rest time, locomotor task time 20.40.41.00.50.61.00.3
Distance moved, locomotor task time 20.40.51.2-0.7-0.4-0.5-1.1
Vertical activity count, locomotor time 20.10.10.20.1-0.0-0.5-0.3
Weight adjusted by age0.30.30.6-0.7-0.1-0.50.8
Seeking ratio, delayed vs. immediate footshock3.94.45.5-1.9-2.3-2.3-1.8
Locomotion in novel chamber0.30.40.7-0.5-0.8-0.1-0.8
Locomotion in novel chamber post-restriction2.63.05.5-1.5-1.6-1.4-2.3
Progressive ratio0.00.00.10.00.30.10.2
Food seeking constrained by brief footshock4.25.211.3-1.7-2.5-3.4-0.8
Seeking ratio, punishment vs. effort1.21.53.0-0.9-1.4-1.7-0.6
Run reversals in cocaine runway, females0.40.40.9-0.5-0.5-0.2-1.0
Run reversals in cocaine runway, males0.00.00.1-0.2-0.20.0-0.1
Latency to leave start box in cocaine runway0.70.71.0-0.5-1.0-0.9-0.9
Latency to leave start box in cocaine runway, F0.00.00.00.1-0.1-0.00.2
Latency to leave start box in cocaine runway, M0.60.51.4-0.3-0.7-1.2-0.4
Cd content in liver0.80.91.8-1.0-0.6-0.7-1.3
Co content in liver2.02.43.31.81.51.41.5
Cu content in liver1.21.42.21.51.21.40.1
Fe content in liver1.01.21.71.21.30.11.3
K content in liver0.50.50.90.50.80.60.9
Mg content in liver0.30.30.50.10.40.60.7
Mn content in liver0.50.61.0-0.8-0.6-0.4-1.0
Na content in liver3.03.24.62.12.11.80.8
Rb content in liver3.84.86.12.22.12.52.0
Se content in liver1.41.73.3-1.2-0.7-1.2-1.8
Sr content in liver0.40.40.5-0.7-0.4-0.7-0.7
Zn content in liver0.70.81.6-1.3-0.7-0.3-1.0