Wnt5a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000015618 0.03 0.02 6.5e-03 0.01 0.01 0 0.01 1.5e-02 5.4e-02 2.1e-01 9.0e-03
2 Brain gene expression ENSRNOG00000015618 0.07 0.04 2.3e-03 0.03 0.03 0.02 0.03 3.8e-04 1.7e-03 5.2e-03 6.6e-04
3 Liver gene expression ENSRNOG00000015618 0.04 0.03 7.3e-04 0.03 0.02 0.02 0.02 4.2e-04 1.3e-03 2.1e-03 2.7e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.13.45.62.41.11.9
BMI without tail2.14.47.22.70.22.4
Body weight1.45.99.12.90.53.0
Epididymis fat weight1.53.57.31.0-1.52.7
Glucose0.20.30.7-0.2-0.80.5
Heart weight0.20.30.6-0.50.8-0.3
Left kidney weight0.92.54.90.8-1.52.2
Right kidney weight0.71.93.71.40.21.9
Tail length0.31.01.81.0-0.41.4
Length with tail0.20.71.50.5-0.51.2
Length without tail0.10.20.50.10.00.7
Liver weight, left0.20.30.70.6-0.00.8
Liver weight, right0.20.30.7-0.20.8-0.1
Parametrial fat weight2.03.96.72.60.22.2
Retroperitoneal fat weight2.17.112.23.0-0.23.5
Intraocular pressure2.12.95.70.12.4-1.8
Extensor digitorum longus weight1.97.610.6-1.43.2-3.3
Soleus weight1.54.48.62.91.71.4
Tibialis anterior weight0.72.34.21.62.10.5
Tibia length0.31.01.9-1.0-1.4-0.1
Number of licking bursts0.10.10.20.30.20.4
Food consumed during 24 hour testing period3.64.45.6-1.52.3-2.4
Times rat made contact with spout3.64.16.2-1.12.5-2.2
Mean time between licks in bursts0.60.81.7-0.8-1.30.3
Mean num. licks in bursts1.21.52.4-0.61.3-1.6
Std. dev. time between licks in bursts1.51.84.0-0.1-2.01.2
Water consumed over 24 hours1.61.92.9-0.61.7-1.6
Indifference point 0 sec1.42.24.4-0.42.1-1.5
Indifference point AUC0.70.81.10.6-1.11.0
Indifference point function ln k1.11.64.10.02.0-0.8
Indifference point function log k1.11.64.10.02.0-0.8
Delay discounting total patch changes 0 sec1.72.75.9-0.22.4-1.5
Delay discounting total patch changes 12 sec0.71.01.7-0.80.8-1.3
Delay discounting total patch changes 18 sec0.20.30.4-0.30.6-0.6
Delay discounting total patch changes 24 sec0.10.10.20.40.4-0.1
Delay discounting total patch changes 6 sec0.50.71.50.21.2-0.8
Delay discounting time to switch 0 sec1.11.72.2-1.4-1.5-1.0
Delay discounting water rate 0 sec2.13.36.31.92.50.5
Delay discounting water rate 12 sec0.61.02.60.51.6-0.3
Delay discounting water rate 18 sec0.91.21.81.31.30.4
Delay discounting water rate 24 sec2.73.75.92.42.01.0
Delay discounting water rate 6 sec1.21.74.01.02.00.2
Locomotor activity0.40.70.80.80.80.9
Locomotor testing distance1.01.62.51.60.71.4
Locomotor testing rearing1.01.62.71.60.41.4
Light reinforcement 10.40.61.3-0.8-1.1-0.2
Light reinforcement 20.91.23.2-0.6-1.80.3
Reaction time number correct0.00.10.20.10.10.4
Reaction time mean minus median1.31.73.00.9-1.11.7
Reaction time mean minus median AUC2.43.15.21.9-0.62.3
Reaction time num false alarms0.40.51.0-1.0-0.5-0.6
Reaction time num false alarms AUC0.40.50.9-1.0-0.4-0.7
Reaction time trials correct on left0.00.10.20.10.10.4
Reaction time trials on left0.10.10.30.1-0.10.6
Reaction time mean1.72.34.81.2-0.92.2
Reaction time mean AUC1.92.55.01.0-1.22.2
Median of all reaction times1.31.83.81.0-0.81.9
Reaction time omissions0.91.32.00.6-1.21.4
Reaction time false alarm rate0.20.30.4-0.6-0.5-0.5
Reaction time premature initiation rate0.50.71.21.1-0.50.9
Reaction time premature initiations0.91.21.81.1-0.71.4
Std. dev. reaction times2.23.05.11.6-1.22.3
Reaction time trials completed0.10.10.30.1-0.10.6
Reaction time trials AUC0.20.20.40.50.30.6
Social response proportion0.20.20.3-0.60.4-0.5
Social responses0.50.71.0-1.0-0.9-0.6
Social time1.01.33.5-0.5-1.90.5
Conditioned locomotion0.70.81.51.2-0.11.0
Cocaine response after cond. corrected0.20.20.4-0.60.1-0.4
Cocaine response after cond. not corrected0.10.10.2-0.4-0.0-0.3
Cocaine response before conditioning0.20.20.5-0.10.4-0.7
Saline control response0.81.11.61.11.30.8
Condit. Reinf. active minus inactive responses0.50.61.20.1-0.71.1
Condit. Reinf. active-inactive response ratio1.92.04.21.3-0.62.0
Condit. Reinf. active responses0.10.10.3-0.2-0.30.5
Condit. Reinf. inactive responses1.21.52.5-1.6-0.1-1.4
Condit. Reinf. lever presses0.40.61.40.51.2-0.1
Condit. Reinf. lever reinforcers received0.10.10.2-0.0-0.00.5
Pavlov. Cond. lever latency0.70.91.40.7-0.91.2
Pavlov. Cond. magazine entry latency3.74.27.5-1.51.7-2.7
Pavlov. Cond. change in total contacts1.52.13.7-0.61.9-1.5
Pavlov. Cond. index score2.22.95.1-1.31.4-2.2
Pavlov. Cond. latency score2.93.66.0-1.41.7-2.5
Pavlov. Cond. lever contacts0.81.11.7-0.80.9-1.3
Pavlov. Cond. magazine entry number3.74.67.71.3-2.12.8
Pavlov. Cond. intertrial magazine entries5.57.113.02.3-1.83.6
Pavlov. Cond. lever-magazine prob. diff.2.43.25.4-1.41.4-2.3
Pavlov. Cond. response bias1.62.23.7-1.01.4-1.9
Conditioned reinforcement - actives0.90.81.30.5-1.01.1
Conditioned reinforcement - inactives2.42.74.12.01.90.7
Conditioned locomotion0.10.10.30.50.20.3
Intermittent access intake day 1-15 change0.60.61.40.3-1.20.6
Intermittent access intake escalation0.80.82.1-0.0-1.40.6
Intermittent access intake escalation 20.20.20.40.3-0.60.5
Intermitt. access day 1 inactive lever presses0.30.40.70.30.8-0.5
Intermitt. access day 15 inactive lever presses0.20.20.3-0.4-0.5-0.5
Intermitt. access escalation Index1.21.12.01.40.50.9
Intermittent access day 1 total infusions1.01.12.6-0.01.6-0.9
Intermittent access day 15 total infusions0.20.20.5-0.40.3-0.7
Intermittent access terminal intake (last 3 days)0.00.00.10.10.30.0
Intermittent access total infusions0.10.10.20.10.4-0.1
Intermittent access day 1 locomotion1.51.52.4-0.81.5-1.3
Intermittent access day 15 total locomotion0.30.40.90.40.9-0.3
Intermittent access total locomotion0.10.20.4-0.10.6-0.3
Intermittent access standard deviation1.21.22.01.3-0.21.4
Cocaine induced anxiety0.80.91.90.5-0.71.4
Post-drug Anxiety0.00.00.0-0.10.00.0
Baseline Anxiety0.90.91.9-0.70.7-1.4
Lifetime Intake0.10.10.20.10.40.0
Incentive Sensitization - Responses1.81.83.80.21.9-1.3
Incentive Sensitization - Breakpoint1.71.73.50.21.9-1.2
Progressive ratio test 1 active lever presses0.10.10.20.20.30.4
Progressive ratio test 1 breakpoint0.10.10.20.30.40.3
Progressive ratio test 1 inactive lever presses0.10.20.30.30.6-0.2
Progressive ratio test 2 active lever presses0.90.91.6-0.21.2-1.1
Progressive ratio test 2 breakpoint0.70.81.6-0.01.3-0.8
Progressive ratio test 2 inactive lever presses0.30.30.60.60.80.0
Total sessions with >9 infusions0.10.20.40.30.10.6
Short access day 1 total inactive lever presses0.30.40.9-0.00.9-0.5
Short access day 10 total inactive lever presses1.82.03.1-1.6-0.4-1.8
Short access day 1 total infusions1.01.02.11.01.50.3
Short access day 10 total infusions0.70.81.6-0.9-1.30.0
Short access total infusions0.10.10.20.20.50.2
Short access day 1 locomotion2.12.25.4-0.22.3-1.0
Short access day 10 total locomotion0.20.20.3-0.3-0.30.6
Short access total locomotion0.20.20.4-0.6-0.2-0.2
Compulsive drug intake0.10.10.2-0.2-0.50.4
One hour access (0.3 mA shock)0.30.30.8-0.9-0.2-0.5
One hour access (shock baseline)0.00.00.0-0.1-0.1-0.1
Number of responses in last shaping day0.60.61.5-0.31.2-0.6
Context. condit. distance diff. score0.00.00.1-0.1-0.3-0.1
Locomotion velocity, session 15.55.910.8-3.3-1.2-2.3
Locomotion distance, session 13.64.68.1-2.8-1.2-2.1
Locomotion velocity, session 23.84.46.6-2.6-2.1-1.5
Locomotion distance, session 21.82.54.7-2.2-1.4-1.0
Locomotion velocity, session 32.93.46.3-2.5-0.4-1.9
Locomotion distance, session 31.41.52.5-0.81.6-1.1
Stereotopy head waving bouts, day 30.00.00.1-0.2-0.1-0.2
Stereotopy head waving duration, day 30.10.10.20.0-0.5-0.3
Locomotion velocity, session 71.01.13.0-1.7-0.2-0.4
Locomotion distance, session 70.50.61.1-0.71.0-0.4
Stereotopy head waving bouts, day 72.02.33.41.5-1.11.9
Stereotopy head waving duration, day 72.02.53.21.6-1.31.8
Locomotion velocity, session 88.19.718.3-4.3-1.4-3.0
Locomotion distance, session 82.33.46.4-2.5-1.2-1.5
Degree of sensitization distance0.20.20.4-0.0-0.60.5
Degree of sensitization stereotypy2.42.64.01.4-1.42.0
Condit. Reinf. active minus inactive responses1.21.43.30.31.8-0.8
Condit. Reinf. active-inactive response ratio3.13.47.41.62.7-0.3
Condit. Reinf. active responses0.10.20.3-0.20.4-0.6
Condit. Reinf. inactive responses2.22.65.3-1.5-2.3-0.1
Incentive salience index mean0.40.41.10.51.0-0.1
Condit. Reinf. lever presses0.10.10.30.4-0.00.5
Time in familiar zone, hab. session 12.42.33.71.71.90.6
Time in novel zone, hab. session 11.21.22.9-0.7-1.70.3
Total zone transitions, hab. session 12.23.14.6-2.1-0.6-2.1
Total locomotion distance, hab. session 11.82.54.3-2.1-1.4-1.1
Locomotion velocity, hab. session 12.63.76.8-2.6-1.1-1.8
Time in familiar zone, hab. session 24.64.87.7-1.02.8-2.4
Time in novel zone, hab. session 22.82.94.11.0-2.01.9
Total zone transitions, hab. session 21.01.32.4-1.6-0.4-1.1
Total locomotion distance, hab. session 21.41.83.6-1.9-0.2-1.4
Locomotion velocity, hab. session 21.52.04.0-2.0-0.4-1.3
Novel to familiar place preference ratio0.50.50.80.8-0.20.9
Novelty place preference0.10.10.10.40.10.3
Time in novel zone, NPP test0.20.20.30.60.10.4
Total zone transitions, NPP test2.73.96.8-2.6-0.5-2.1
Total locomotion distance, NPP test2.94.07.6-2.8-0.7-2.0
Locomotion velocity, NPP test3.34.79.0-3.0-1.0-2.0
Pavlov. Cond. lever latency0.30.40.70.1-0.80.6
Pavlov. Cond. magazine entry latency0.30.40.6-0.20.7-0.7
Pavlov. Cond. change in total contacts0.20.20.4-0.40.2-0.6
Pavlov. Cond. index score0.10.20.2-0.40.3-0.5
Pavlov. Cond. latency score0.10.20.4-0.10.6-0.4
Pavlov. Cond. lever contacts0.50.50.9-0.80.3-0.9
Pavlov. Cond. magazine entry number0.60.81.20.8-0.61.1
Pavlov. Cond. intertrial magazine entries0.60.71.7-0.6-1.30.2
Pavlov. Cond. lever-magazine prob. diff.0.10.20.3-0.5-0.1-0.5
Pavlov. Cond. response bias0.91.01.7-1.30.1-1.2
Bone: apparent density0.91.53.31.81.00.6
Bone surface0.91.52.61.61.30.6
Bone volume1.22.13.21.81.60.7
Bone: connectivity density1.32.14.42.1-0.21.3
Bone: cortical apparent density2.12.74.9-1.51.0-2.2
Bone: cortical area6.59.814.93.92.72.7
Bone: cortical porosity0.80.81.40.0-1.11.2
Bone: cortical porosity0.40.40.70.0-0.70.9
Bone: cortical thickness2.74.56.42.51.72.0
Bone: cortical thickness3.13.75.72.40.72.2
Bone: cortical tissue density2.73.56.3-1.80.9-2.5
Bone: elastic displacement1.41.62.9-1.7-0.2-1.4
Bone: elastic work1.01.42.21.50.41.3
Bone: endosteal estimation4.910.617.14.11.53.5
Bone: endosteal perimeter2.65.38.52.91.52.2
Bone: final force6.911.317.94.21.43.8
Bone: final moment6.610.916.84.11.23.8
Bone: marrow area4.710.116.14.01.53.4
Bone: maximum diameter2.64.87.72.42.80.9
Bone: maximum force9.115.824.14.91.24.7
Bone: maximum moment8.514.721.74.71.14.6
Bone: minimum diameter7.213.319.94.52.53.7
Bone: periosteal estimation8.016.426.55.12.74.0
Bone: periosteal perimeter4.16.810.83.32.22.2
Bone: post-yield work3.75.18.32.90.22.6
Bone: stiffness8.513.520.54.50.84.4
Bone: tissue strength0.70.71.30.90.01.1
Bone: trabecular number2.23.46.02.50.12.0
Bone: trabecular spacing0.20.30.6-0.4-0.80.2
Bone: trabecular thickness0.20.30.50.50.7-0.2
Bone: trabecular tissue density0.10.10.30.5-0.20.4
Breakpoint value in progressive ratio session0.50.60.9-0.90.8-0.5
Distance traveled before self-admin1.61.73.4-0.41.9-1.2
Distance traveled after self-admin1.21.43.50.21.9-0.7
Delta time in closed arm before/after self-admin0.20.20.30.3-0.60.4
Delta time in open arm before/after self-admin1.21.22.70.11.6-0.9
Diff in mean of infusions in LGA sessions4.95.510.0-2.5-3.2-0.4
Extinction: sum of active levers before priming1.71.72.2-1.01.4-1.5
Active lever presses in extinction session 60.20.20.3-0.60.4-0.0
Delta distance traveled before/after self-admin0.10.10.20.4-0.40.2
Delta ambulatory time before/after self-admin0.10.10.20.10.5-0.4
Time in closed arm before self-admin0.10.10.20.2-0.40.2
Time in closed arm after self-admin0.40.40.50.7-0.50.6
Time in open arm before self-admin0.40.50.80.3-0.70.9
Time in open arm after self-admin0.20.20.50.10.7-0.3
Sum of active levers in priming session hrs 5-60.20.20.7-0.0-0.10.8
Time to tail flick, vehicle, before self-admin0.20.20.4-0.7-0.50.2
Time to tail flick, vehicle, after self-admin1.51.62.6-1.5-1.60.2
Time to tail flick, test, before self-admin0.20.20.4-0.60.5-0.2
Time to tail flick, test, after self-admin0.40.40.6-0.2-0.70.7
Delta time to tail flick, vehicle, before/after SA0.30.30.5-0.6-0.7-0.0
Delta time to tail flick, test, before/after SA0.30.30.30.6-0.40.6
Ambulatory time before self-admin0.40.51.0-0.11.0-0.6
Ambulatory time after self-admin2.32.65.4-0.22.3-1.5
Total heroin consumption0.20.20.4-0.60.20.4
Area under the delay curve0.10.20.4-0.20.60.1
Delay disc. indifference point, 0s delay1.01.02.20.9-0.11.5
Delay disc. indifference point, 16s delay0.60.61.1-1.00.2-0.8
Delay disc. indifference point, 2s delay0.20.20.4-0.60.6-0.2
Delay disc. indifference point, 24s delay1.41.31.8-1.4-0.7-1.3
Delay disc. indifference point, 4s delay1.11.22.40.81.60.7
Delay disc. indifference point, 8s delay0.10.10.20.30.20.5
Delay discount exponential model param0.10.10.40.1-0.6-0.1
Delay discount hyperbolic model param0.20.20.50.1-0.7-0.2
Fecal boli incidents, locomotor time 10.70.71.90.41.40.1
Change in fecal boli incidents, locomotor task0.20.20.30.4-0.30.5
Time >=10cm from walls, locomotor time 10.40.40.7-0.30.6-0.8
Bouts of movement, locomotor time 11.41.52.71.20.61.6
Total resting periods, locomotor time 10.60.71.50.80.21.2
Rest time, locomotor task time 11.51.63.11.3-0.31.8
Distance moved, locomotor task time 10.10.20.50.0-0.70.1
Vertical activity count, locomotor time 10.10.10.10.20.4-0.1
Time >=10cm from walls, locomotor time 20.30.30.70.50.80.2
Bouts of movement, locomotor time 20.10.10.20.10.40.1
Total resting periods, locomotor time 20.20.20.30.50.40.5
Rest time, locomotor task time 22.02.43.51.7-0.81.9
Distance moved, locomotor task time 20.20.20.40.2-0.20.7
Vertical activity count, locomotor time 20.30.30.80.40.90.0
Weight adjusted by age1.01.22.5-1.0-1.6-0.1
Seeking ratio, delayed vs. immediate footshock1.01.12.11.40.70.9
Locomotion in novel chamber0.40.40.7-0.60.5-0.8
Locomotion in novel chamber post-restriction0.00.00.10.2-0.0-0.1
Progressive ratio0.40.40.70.3-0.70.8
Food seeking constrained by brief footshock0.80.91.90.6-0.81.4
Seeking ratio, punishment vs. effort0.00.10.1-0.20.3-0.2
Run reversals in cocaine runway, females0.20.20.3-0.5-0.4-0.3
Run reversals in cocaine runway, males2.52.43.6-1.90.7-1.7
Latency to leave start box in cocaine runway0.50.61.2-0.0-1.10.7
Latency to leave start box in cocaine runway, F0.30.30.6-0.5-0.80.2
Latency to leave start box in cocaine runway, M0.30.30.50.60.20.7
Cd content in liver0.20.20.30.00.5-0.6
Co content in liver0.40.50.7-0.50.7-0.8
Cu content in liver1.41.72.1-1.41.0-1.5
Fe content in liver0.10.10.2-0.40.2-0.4
K content in liver0.90.91.6-1.3-0.9-0.3
Mg content in liver0.30.40.6-0.8-0.5-0.4
Mn content in liver1.01.21.7-1.3-1.1-0.6
Na content in liver1.11.22.4-1.0-1.50.3
Rb content in liver1.21.53.2-0.01.8-1.2
Se content in liver0.50.61.7-0.3-1.30.2
Sr content in liver0.50.50.70.90.10.8
Zn content in liver2.22.44.3-1.41.0-2.1