Lpar6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000015577 0.07 0.04 1.3e-06 0.05 0.04 0.05 0.05 4.6e-06 8.1e-06 1.3e-06 5.0e-06
2 Brain gene expression ENSRNOG00000015577 0.03 0.03 5.1e-03 0.01 0.01 0 0 6.6e-02 1.5e-02 1.9e-01 1.4e-01
3 Liver gene expression ENSRNOG00000015577 0.05 0.04 8.1e-04 0.01 0.02 0.01 0.01 2.2e-02 4.1e-03 6.1e-02 1.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.20.50.9-0.0-0.80.9
BMI without tail0.81.63.10.6-1.81.1
Body weight0.41.63.71.90.2-1.1
Epididymis fat weight0.92.03.81.9-1.5-0.2
Glucose1.11.73.6-0.5-1.21.9
Heart weight0.00.10.20.10.1-0.4
Left kidney weight1.13.26.12.5-0.1-1.9
Right kidney weight2.26.29.33.10.2-3.0
Tail length0.72.14.82.2-0.4-1.2
Length with tail0.72.53.61.71.0-1.9
Length without tail1.02.14.0-0.32.0-1.5
Liver weight, left0.20.30.7-0.10.8-0.4
Liver weight, right0.00.10.1-0.00.30.3
Parametrial fat weight1.01.93.60.5-1.91.4
Retroperitoneal fat weight0.20.81.60.7-1.30.6
Intraocular pressure0.60.92.11.4-0.70.2
Extensor digitorum longus weight3.112.422.5-4.73.8-0.3
Soleus weight2.36.614.8-3.92.10.7
Tibialis anterior weight1.96.49.6-3.13.0-0.7
Tibia length4.913.929.95.5-0.0-3.4
Number of licking bursts0.81.01.31.1-1.10.8
Food consumed during 24 hour testing period0.40.40.80.70.3-0.9
Times rat made contact with spout2.32.63.92.0-1.80.8
Mean time between licks in bursts0.10.10.20.1-0.50.1
Mean num. licks in bursts0.00.00.10.3-0.1-0.0
Std. dev. time between licks in bursts1.72.03.91.40.6-2.0
Water consumed over 24 hours0.10.10.20.40.2-0.4
Indifference point 0 sec3.35.311.93.5-0.2-2.0
Indifference point AUC1.31.52.4-1.5-0.31.4
Indifference point function ln k1.21.72.91.70.2-1.5
Indifference point function log k1.21.72.91.70.2-1.5
Delay discounting total patch changes 0 sec3.35.311.93.5-0.0-2.0
Delay discounting total patch changes 12 sec1.01.42.91.70.3-1.1
Delay discounting total patch changes 18 sec0.60.81.51.2-0.80.5
Delay discounting total patch changes 24 sec1.51.94.32.10.2-1.1
Delay discounting total patch changes 6 sec1.32.03.51.9-1.50.5
Delay discounting time to switch 0 sec0.10.10.2-0.10.4-0.4
Delay discounting water rate 0 sec0.61.02.91.7-0.1-0.4
Delay discounting water rate 12 sec0.00.00.0-0.00.1-0.1
Delay discounting water rate 18 sec0.20.30.5-0.1-0.60.7
Delay discounting water rate 24 sec1.11.52.10.7-1.31.4
Delay discounting water rate 6 sec0.20.30.7-0.00.8-0.3
Locomotor activity6.310.015.60.13.9-3.8
Locomotor testing distance4.77.812.61.03.1-3.6
Locomotor testing rearing5.78.914.81.53.1-3.9
Light reinforcement 11.73.15.41.6-2.31.2
Light reinforcement 23.74.97.7-0.2-2.82.6
Reaction time number correct1.62.23.5-1.9-0.51.7
Reaction time mean minus median2.63.45.20.62.1-2.3
Reaction time mean minus median AUC0.91.11.80.61.1-1.4
Reaction time num false alarms0.00.00.00.1-0.2-0.1
Reaction time num false alarms AUC0.10.10.30.2-0.60.1
Reaction time trials correct on left1.62.23.5-1.9-0.51.7
Reaction time trials on left1.52.23.2-1.8-0.51.8
Reaction time mean1.72.34.0-0.01.7-2.0
Reaction time mean AUC2.22.94.6-0.22.0-2.2
Median of all reaction times0.91.32.3-0.31.2-1.5
Reaction time omissions0.30.40.80.90.1-0.7
Reaction time false alarm rate0.40.51.11.1-0.5-0.5
Reaction time premature initiation rate0.50.71.1-0.9-0.61.0
Reaction time premature initiations1.82.63.8-1.8-0.81.9
Std. dev. reaction times1.72.43.60.11.9-1.9
Reaction time trials completed1.52.23.2-1.8-0.51.8
Reaction time trials AUC1.62.33.5-1.9-0.51.8
Social response proportion3.13.34.5-2.1-1.12.1
Social responses0.81.01.1-0.9-1.11.1
Social time0.50.61.30.60.4-1.1
Conditioned locomotion0.50.60.8-0.7-0.70.9
Cocaine response after cond. corrected2.22.54.2-2.1-0.51.7
Cocaine response after cond. not corrected0.80.91.3-1.1-0.51.2
Cocaine response before conditioning2.43.06.42.50.0-1.6
Saline control response0.81.02.81.70.1-0.6
Condit. Reinf. active minus inactive responses0.20.30.50.7-0.5-0.0
Condit. Reinf. active-inactive response ratio0.10.10.20.1-0.50.4
Condit. Reinf. active responses0.50.71.51.2-0.8-0.0
Condit. Reinf. inactive responses0.91.23.01.7-0.6-0.3
Condit. Reinf. lever presses1.82.43.71.80.6-1.9
Condit. Reinf. lever reinforcers received0.60.92.11.4-0.7-0.3
Pavlov. Cond. lever latency1.41.93.7-0.9-1.11.9
Pavlov. Cond. magazine entry latency1.41.63.01.10.8-1.7
Pavlov. Cond. change in total contacts1.62.33.4-0.91.9-1.6
Pavlov. Cond. index score2.02.64.90.71.6-2.2
Pavlov. Cond. latency score2.32.95.50.71.6-2.3
Pavlov. Cond. lever contacts2.43.36.11.11.7-2.5
Pavlov. Cond. magazine entry number0.80.91.8-0.9-0.41.3
Pavlov. Cond. intertrial magazine entries2.73.55.02.2-2.20.8
Pavlov. Cond. lever-magazine prob. diff.1.62.14.10.51.4-2.0
Pavlov. Cond. response bias2.63.66.41.11.8-2.5
Conditioned reinforcement - actives2.22.23.7-0.9-1.51.9
Conditioned reinforcement - inactives1.01.12.61.6-0.7-0.4
Conditioned locomotion0.00.00.0-0.0-0.1-0.1
Intermittent access intake day 1-15 change1.31.32.71.7-1.10.1
Intermittent access intake escalation1.21.12.31.5-1.00.3
Intermittent access intake escalation 20.30.30.50.4-0.70.3
Intermitt. access day 1 inactive lever presses0.50.51.41.2-0.4-0.1
Intermitt. access day 15 inactive lever presses0.70.82.01.4-0.1-0.7
Intermitt. access escalation Index0.20.20.3-0.40.60.1
Intermittent access day 1 total infusions1.11.23.21.8-0.70.2
Intermittent access day 15 total infusions1.71.94.12.0-1.20.4
Intermittent access terminal intake (last 3 days)1.01.11.91.4-1.10.6
Intermittent access total infusions1.92.14.22.0-1.30.5
Intermittent access day 1 locomotion1.92.05.32.3-0.8-0.4
Intermittent access day 15 total locomotion1.11.21.71.2-1.30.8
Intermittent access total locomotion1.41.64.12.0-0.8-0.1
Intermittent access standard deviation0.60.72.01.4-0.20.0
Cocaine induced anxiety3.54.06.1-0.32.5-2.4
Post-drug Anxiety0.30.30.90.30.3-0.9
Baseline Anxiety1.92.03.31.3-1.81.0
Lifetime Intake1.41.63.61.9-1.10.4
Incentive Sensitization - Responses1.81.83.40.9-1.81.1
Incentive Sensitization - Breakpoint2.02.03.61.1-1.91.0
Progressive ratio test 1 active lever presses1.11.11.60.7-1.11.3
Progressive ratio test 1 breakpoint1.41.52.30.6-1.31.5
Progressive ratio test 1 inactive lever presses3.03.25.12.3-1.81.0
Progressive ratio test 2 active lever presses3.23.45.00.8-2.22.1
Progressive ratio test 2 breakpoint2.73.04.51.3-2.11.7
Progressive ratio test 2 inactive lever presses1.31.53.11.7-1.10.3
Total sessions with >9 infusions0.30.40.70.5-0.80.5
Short access day 1 total inactive lever presses2.73.08.12.9-0.9-0.2
Short access day 10 total inactive lever presses0.60.71.11.1-0.90.4
Short access day 1 total infusions0.40.40.50.6-0.70.7
Short access day 10 total infusions1.31.53.41.80.4-0.9
Short access total infusions1.21.33.21.8-0.80.1
Short access day 1 locomotion1.01.01.90.51.0-1.4
Short access day 10 total locomotion0.60.61.10.80.1-1.0
Short access total locomotion1.31.32.51.6-0.0-1.2
Compulsive drug intake1.21.21.71.00.9-1.3
One hour access (0.3 mA shock)0.50.51.51.2-0.30.2
One hour access (shock baseline)0.30.30.8-0.1-0.40.9
Number of responses in last shaping day0.10.10.2-0.40.3-0.1
Context. condit. distance diff. score4.85.88.9-0.0-3.02.9
Locomotion velocity, session 11.11.22.2-1.01.5-0.8
Locomotion distance, session 10.91.21.70.71.2-1.3
Locomotion velocity, session 20.70.81.30.41.0-1.1
Locomotion distance, session 22.53.65.11.12.1-2.3
Locomotion velocity, session 30.60.71.1-0.4-0.91.0
Locomotion distance, session 31.11.21.90.2-1.41.2
Stereotopy head waving bouts, day 30.60.71.3-1.10.9-0.2
Stereotopy head waving duration, day 31.01.22.2-0.91.5-0.8
Locomotion velocity, session 78.89.616.70.9-4.13.4
Locomotion distance, session 75.67.111.90.4-3.43.0
Stereotopy head waving bouts, day 70.91.01.50.51.1-1.2
Stereotopy head waving duration, day 70.70.91.6-0.21.2-1.0
Locomotion velocity, session 80.40.50.70.4-0.80.8
Locomotion distance, session 80.81.22.11.4-1.10.5
Degree of sensitization distance2.32.43.80.1-1.91.8
Degree of sensitization stereotypy0.50.50.60.70.6-0.8
Condit. Reinf. active minus inactive responses1.21.32.20.90.9-1.5
Condit. Reinf. active-inactive response ratio0.60.61.5-1.20.5-0.1
Condit. Reinf. active responses2.42.94.82.20.7-1.9
Condit. Reinf. inactive responses4.35.111.33.40.3-2.0
Incentive salience index mean3.34.05.82.40.8-2.4
Condit. Reinf. lever presses4.86.412.13.50.3-2.7
Time in familiar zone, hab. session 10.60.61.10.8-1.00.4
Time in novel zone, hab. session 12.22.24.9-2.20.80.9
Total zone transitions, hab. session 10.50.61.2-0.01.1-0.9
Total locomotion distance, hab. session 11.11.62.70.71.3-1.6
Locomotion velocity, hab. session 12.43.55.81.41.7-2.4
Time in familiar zone, hab. session 21.11.12.1-1.5-0.11.1
Time in novel zone, hab. session 20.30.30.40.70.4-0.6
Total zone transitions, hab. session 22.33.05.20.02.3-2.0
Total locomotion distance, hab. session 21.52.03.10.41.8-1.6
Locomotion velocity, hab. session 22.12.84.50.42.1-1.9
Novel to familiar place preference ratio1.31.33.61.9-0.1-0.6
Novelty place preference1.41.53.92.0-0.1-0.6
Time in novel zone, NPP test1.01.13.01.7-0.0-0.6
Total zone transitions, NPP test0.91.41.81.11.0-1.3
Total locomotion distance, NPP test1.42.03.51.90.6-1.4
Locomotion velocity, NPP test1.52.24.42.10.5-1.4
Pavlov. Cond. lever latency2.02.56.0-2.50.31.2
Pavlov. Cond. magazine entry latency0.50.61.41.2-0.7-0.0
Pavlov. Cond. change in total contacts1.51.63.21.80.3-1.1
Pavlov. Cond. index score1.72.25.42.3-0.4-1.0
Pavlov. Cond. latency score2.12.76.72.6-0.5-1.1
Pavlov. Cond. lever contacts2.12.55.82.4-0.3-1.2
Pavlov. Cond. magazine entry number0.20.20.7-0.80.30.1
Pavlov. Cond. intertrial magazine entries1.21.42.21.30.5-1.5
Pavlov. Cond. lever-magazine prob. diff.1.51.84.52.1-0.2-1.0
Pavlov. Cond. response bias0.40.51.21.1-0.2-0.6
Bone: apparent density0.20.30.80.9-0.0-0.4
Bone surface0.40.60.90.90.4-0.9
Bone volume0.30.50.80.90.4-0.7
Bone: connectivity density0.40.61.41.2-0.5-0.3
Bone: cortical apparent density1.82.33.7-1.3-1.21.9
Bone: cortical area0.00.00.00.2-0.1-0.0
Bone: cortical porosity2.42.64.11.61.0-2.0
Bone: cortical porosity1.92.03.41.31.0-1.8
Bone: cortical thickness0.20.30.70.8-0.50.1
Bone: cortical thickness0.80.91.50.3-1.11.2
Bone: cortical tissue density1.92.54.0-1.4-1.22.0
Bone: elastic displacement1.01.21.50.71.2-1.2
Bone: elastic work2.33.04.41.21.7-2.1
Bone: endosteal estimation0.10.20.3-0.40.5-0.5
Bone: endosteal perimeter0.30.50.6-0.80.7-0.7
Bone: final force0.50.82.01.4-0.6-0.3
Bone: final moment0.50.92.11.5-0.2-0.7
Bone: marrow area0.10.20.3-0.30.5-0.6
Bone: maximum diameter0.30.51.1-1.0-0.20.7
Bone: maximum force0.40.61.21.10.2-0.8
Bone: maximum moment0.61.11.51.20.6-1.2
Bone: minimum diameter0.30.61.00.50.7-1.0
Bone: periosteal estimation0.00.10.1-0.30.2-0.2
Bone: periosteal perimeter0.00.00.1-0.40.00.0
Bone: post-yield work0.91.22.10.5-1.51.1
Bone: stiffness0.30.41.01.0-0.4-0.3
Bone: tissue strength0.40.40.80.50.3-0.9
Bone: trabecular number0.40.61.31.2-0.6-0.2
Bone: trabecular spacing0.60.81.8-1.40.8-0.0
Bone: trabecular thickness0.81.02.81.7-0.4-0.3
Bone: trabecular tissue density0.60.91.9-1.40.9-0.0
Breakpoint value in progressive ratio session0.20.20.4-0.10.70.4
Distance traveled before self-admin1.71.93.4-1.01.9-1.1
Distance traveled after self-admin2.22.46.2-2.50.41.0
Delta time in closed arm before/after self-admin0.10.10.1-0.3-0.1-0.3
Delta time in open arm before/after self-admin0.10.10.10.2-0.40.2
Diff in mean of infusions in LGA sessions0.30.30.5-0.30.60.7
Extinction: sum of active levers before priming0.80.81.61.3-0.70.3
Active lever presses in extinction session 60.70.70.90.8-1.00.8
Delta distance traveled before/after self-admin3.03.25.1-1.8-1.22.3
Delta ambulatory time before/after self-admin1.51.62.6-1.3-0.81.6
Time in closed arm before self-admin0.10.20.4-0.6-0.30.2
Time in closed arm after self-admin0.10.20.4-0.60.2-0.1
Time in open arm before self-admin0.20.20.3-0.60.50.3
Time in open arm after self-admin0.00.00.1-0.30.00.2
Sum of active levers in priming session hrs 5-62.92.94.7-1.8-1.02.2
Time to tail flick, vehicle, before self-admin2.22.25.62.4-1.00.0
Time to tail flick, vehicle, after self-admin1.11.22.8-0.7-0.51.7
Time to tail flick, test, before self-admin0.40.40.70.70.2-0.8
Time to tail flick, test, after self-admin1.71.83.80.9-1.90.9
Delta time to tail flick, vehicle, before/after SA1.21.11.9-1.2-0.31.4
Delta time to tail flick, test, before/after SA2.42.13.5-0.3-1.91.7
Ambulatory time before self-admin0.80.91.9-0.21.4-0.9
Ambulatory time after self-admin1.61.84.1-2.01.10.3
Total heroin consumption0.40.51.3-0.21.1-0.3
Area under the delay curve0.50.50.80.70.5-0.9
Delay disc. indifference point, 0s delay1.31.42.6-0.01.3-1.6
Delay disc. indifference point, 16s delay0.30.30.40.50.6-0.6
Delay disc. indifference point, 2s delay1.41.61.9-1.41.4-1.0
Delay disc. indifference point, 24s delay0.00.00.0-0.1-0.10.2
Delay disc. indifference point, 4s delay0.30.30.5-0.70.6-0.3
Delay disc. indifference point, 8s delay0.60.61.51.2-0.2-0.5
Delay discount exponential model param0.40.40.7-0.6-0.40.8
Delay discount hyperbolic model param0.40.50.9-0.2-0.70.9
Fecal boli incidents, locomotor time 11.01.11.21.01.1-1.0
Change in fecal boli incidents, locomotor task0.70.71.9-1.40.10.3
Time >=10cm from walls, locomotor time 10.50.50.80.80.2-0.9
Bouts of movement, locomotor time 10.50.61.2-1.10.20.7
Total resting periods, locomotor time 10.70.81.6-1.30.10.9
Rest time, locomotor task time 11.11.22.4-1.51.10.0
Distance moved, locomotor task time 10.70.71.31.0-1.10.3
Vertical activity count, locomotor time 10.30.40.7-0.20.8-0.6
Time >=10cm from walls, locomotor time 21.01.11.7-1.11.3-0.6
Bouts of movement, locomotor time 20.50.60.9-0.80.21.0
Total resting periods, locomotor time 20.40.40.9-0.60.21.0
Rest time, locomotor task time 20.20.30.8-0.3-0.10.9
Distance moved, locomotor task time 20.60.61.21.1-0.0-0.9
Vertical activity count, locomotor time 21.11.22.1-0.71.5-0.9
Weight adjusted by age1.31.41.8-1.31.3-0.9
Seeking ratio, delayed vs. immediate footshock0.20.20.5-0.30.3-0.7
Locomotion in novel chamber0.91.11.51.20.7-1.1
Locomotion in novel chamber post-restriction0.20.30.4-0.6-0.20.6
Progressive ratio0.91.02.4-0.5-0.71.5
Food seeking constrained by brief footshock4.55.58.4-2.9-0.22.8
Seeking ratio, punishment vs. effort0.50.61.6-1.30.30.1
Run reversals in cocaine runway, females0.50.50.9-0.1-1.00.7
Run reversals in cocaine runway, males0.70.71.00.71.0-0.7
Latency to leave start box in cocaine runway1.11.21.7-1.31.3-0.4
Latency to leave start box in cocaine runway, F0.50.61.2-0.71.1-0.4
Latency to leave start box in cocaine runway, M0.10.10.1-0.30.3-0.3
Cd content in liver0.20.20.40.2-0.60.5
Co content in liver3.33.87.9-2.80.01.9
Cu content in liver0.70.91.9-1.40.80.3
Fe content in liver0.20.20.40.4-0.60.1
K content in liver0.60.61.40.5-1.20.5
Mg content in liver0.50.50.7-0.4-0.80.8
Mn content in liver0.40.50.6-0.6-0.70.7
Na content in liver5.25.59.70.62.5-3.1
Rb content in liver0.30.40.70.1-0.80.7
Se content in liver2.83.35.2-0.32.3-2.2
Sr content in liver0.10.10.2-0.40.4-0.2
Zn content in liver2.72.94.60.22.1-2.1