Pikfyve

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000015158 0.09 0.05 7.8e-07 0.01 0.04 0.03 0.03 3.5e-02 2.6e-05 1.3e-04 5.8e-04
2 Brain gene expression ENSRNOG00000015158 0.05 0.03 1.0e-05 0.06 0.06 0.06 0.06 2.6e-06 4.9e-06 2.3e-06 6.4e-06
3 Eye gene expression ENSRNOG00000015158 0.72 0.15 1.9e-06 0.16 0.36 0.37 0.37 1.7e-03 1.6e-06 1.0e-06 1.1e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail8.025.929.95.0-5.5-4.7
BMI without tail4.08.49.72.6-3.1-3.0
Body weight0.41.82.11.2-1.3-1.4
Epididymis fat weight0.00.00.10.10.3-0.0
Glucose0.71.11.41.2-1.2-0.8
Heart weight0.81.12.1-0.80.71.4
Left kidney weight0.00.10.20.3-0.50.2
Right kidney weight0.00.00.00.0-0.10.1
Tail length3.711.315.5-3.73.92.2
Length with tail4.817.522.0-4.54.73.2
Length without tail1.22.73.3-1.51.81.6
Liver weight, left1.62.63.6-1.91.61.3
Liver weight, right0.40.60.8-0.90.80.6
Parametrial fat weight0.20.40.7-0.40.8-0.7
Retroperitoneal fat weight0.82.63.31.8-1.4-1.6
Intraocular pressure3.14.35.72.0-1.8-2.4
Extensor digitorum longus weight2.510.012.03.0-3.0-3.5
Soleus weight0.20.61.40.3-0.6-1.2
Tibialis anterior weight0.62.02.41.3-1.5-1.4
Tibia length1.13.14.9-1.72.21.2
Number of licking bursts0.10.10.20.5-0.20.1
Food consumed during 24 hour testing period0.50.60.8-0.90.70.6
Times rat made contact with spout0.70.81.0-0.91.00.8
Mean time between licks in bursts0.40.50.60.6-0.8-0.8
Mean num. licks in bursts0.20.20.3-0.60.60.0
Std. dev. time between licks in bursts3.23.84.61.7-1.9-2.1
Water consumed over 24 hours0.20.20.40.5-0.6-0.1
Indifference point 0 sec1.01.62.21.2-1.1-1.5
Indifference point AUC0.10.10.2-0.20.4-0.1
Indifference point function ln k0.81.12.11.0-1.5-0.5
Indifference point function log k0.81.12.11.0-1.5-0.5
Delay discounting total patch changes 0 sec0.81.31.61.1-1.0-1.3
Delay discounting total patch changes 12 sec0.00.10.20.4-0.00.1
Delay discounting total patch changes 18 sec1.01.31.91.1-0.8-1.4
Delay discounting total patch changes 24 sec0.10.20.30.5-0.1-0.6
Delay discounting total patch changes 6 sec1.21.82.21.2-1.3-1.5
Delay discounting time to switch 0 sec0.10.10.1-0.30.20.3
Delay discounting water rate 0 sec0.40.61.00.8-0.3-1.0
Delay discounting water rate 12 sec0.10.20.40.3-0.6-0.4
Delay discounting water rate 18 sec0.81.11.6-1.00.91.3
Delay discounting water rate 24 sec0.10.10.2-0.10.2-0.5
Delay discounting water rate 6 sec1.31.81.91.3-1.4-1.4
Locomotor activity0.00.00.00.20.2-0.1
Locomotor testing distance0.00.00.00.20.0-0.2
Locomotor testing rearing0.00.10.1-0.10.20.3
Light reinforcement 11.22.33.41.5-1.8-1.0
Light reinforcement 21.11.41.6-1.31.01.2
Reaction time number correct0.10.20.40.1-0.60.2
Reaction time mean minus median0.10.10.20.1-0.3-0.4
Reaction time mean minus median AUC0.00.10.2-0.40.1-0.0
Reaction time num false alarms3.44.75.52.3-2.3-1.9
Reaction time num false alarms AUC3.24.54.52.1-2.1-2.1
Reaction time trials correct on left0.10.20.40.1-0.60.2
Reaction time trials on left0.10.20.40.1-0.60.2
Reaction time mean2.63.64.4-1.92.11.6
Reaction time mean AUC1.92.63.2-1.61.81.3
Median of all reaction times4.05.46.8-2.32.62.0
Reaction time omissions0.00.00.1-0.0-0.1-0.3
Reaction time false alarm rate1.92.73.51.7-1.4-1.9
Reaction time premature initiation rate0.30.40.6-0.70.50.7
Reaction time premature initiations0.10.20.4-0.50.00.6
Std. dev. reaction times0.30.40.5-0.70.70.5
Reaction time trials completed0.10.20.40.1-0.60.2
Reaction time trials AUC0.10.10.3-0.0-0.50.3
Social response proportion0.20.20.4-0.60.50.2
Social responses0.40.50.5-0.70.70.6
Social time0.60.81.2-0.90.61.1
Conditioned locomotion0.70.91.3-1.21.10.1
Cocaine response after cond. corrected0.91.12.0-1.41.10.1
Cocaine response after cond. not corrected1.61.83.0-1.71.40.7
Cocaine response before conditioning0.50.61.7-0.10.31.3
Saline control response0.91.21.50.8-1.2-1.2
Condit. Reinf. active minus inactive responses7.39.111.0-3.33.12.5
Condit. Reinf. active-inactive response ratio7.07.38.5-2.92.82.4
Condit. Reinf. active responses4.86.77.9-2.82.62.2
Condit. Reinf. inactive responses0.20.30.3-0.60.60.5
Condit. Reinf. lever presses1.01.31.6-1.21.11.1
Condit. Reinf. lever reinforcers received5.37.59.0-3.02.82.4
Pavlov. Cond. lever latency1.62.22.51.5-1.4-1.6
Pavlov. Cond. magazine entry latency0.30.40.7-0.40.50.8
Pavlov. Cond. change in total contacts1.42.02.5-1.61.41.2
Pavlov. Cond. index score2.02.62.8-1.61.61.7
Pavlov. Cond. latency score1.82.32.6-1.51.51.6
Pavlov. Cond. lever contacts2.83.94.1-2.01.92.0
Pavlov. Cond. magazine entry number0.91.12.00.8-0.8-1.4
Pavlov. Cond. intertrial magazine entries2.02.63.01.3-1.7-1.7
Pavlov. Cond. lever-magazine prob. diff.1.82.32.4-1.51.51.6
Pavlov. Cond. response bias2.53.53.7-1.91.81.9
Conditioned reinforcement - actives0.60.61.20.6-0.5-1.1
Conditioned reinforcement - inactives1.11.32.4-1.21.50.1
Conditioned locomotion6.88.29.03.0-2.8-2.8
Intermittent access intake day 1-15 change0.10.10.2-0.2-0.20.4
Intermittent access intake escalation0.20.20.4-0.4-0.10.6
Intermittent access intake escalation 20.50.50.9-0.70.11.0
Intermitt. access day 1 inactive lever presses0.20.20.30.30.4-0.5
Intermitt. access day 15 inactive lever presses1.01.21.4-1.11.01.2
Intermitt. access escalation Index1.81.62.71.4-1.60.4
Intermittent access day 1 total infusions0.20.20.60.3-0.2-0.8
Intermittent access day 15 total infusions0.20.20.40.4-0.6-0.3
Intermittent access terminal intake (last 3 days)0.30.40.70.5-0.8-0.3
Intermittent access total infusions0.20.20.50.2-0.2-0.7
Intermittent access day 1 locomotion0.40.40.70.8-0.2-0.8
Intermittent access day 15 total locomotion0.10.10.20.4-0.2-0.0
Intermittent access total locomotion1.01.21.41.2-0.8-1.2
Intermittent access standard deviation0.90.91.1-1.00.90.9
Cocaine induced anxiety0.30.30.70.4-0.8-0.2
Post-drug Anxiety0.40.50.70.5-0.8-0.6
Baseline Anxiety0.50.50.9-0.80.90.0
Lifetime Intake0.60.71.40.6-0.5-1.2
Incentive Sensitization - Responses0.00.00.1-0.30.20.1
Incentive Sensitization - Breakpoint0.00.00.1-0.30.10.0
Progressive ratio test 1 active lever presses0.20.20.40.7-0.5-0.2
Progressive ratio test 1 breakpoint0.10.20.30.5-0.40.2
Progressive ratio test 1 inactive lever presses1.81.92.41.6-1.2-1.4
Progressive ratio test 2 active lever presses0.10.10.10.3-0.3-0.4
Progressive ratio test 2 breakpoint0.00.00.0-0.0-0.1-0.1
Progressive ratio test 2 inactive lever presses0.30.30.50.7-0.4-0.6
Total sessions with >9 infusions0.20.20.5-0.00.0-0.7
Short access day 1 total inactive lever presses0.30.40.50.7-0.4-0.6
Short access day 10 total inactive lever presses1.01.11.6-0.81.31.0
Short access day 1 total infusions0.20.20.30.4-0.6-0.4
Short access day 10 total infusions0.10.10.3-0.50.3-0.1
Short access total infusions1.01.12.20.7-0.7-1.5
Short access day 1 locomotion0.50.60.9-0.70.90.6
Short access day 10 total locomotion0.20.20.5-0.40.70.4
Short access total locomotion0.20.20.40.5-0.3-0.6
Compulsive drug intake0.10.10.20.10.5-0.4
One hour access (0.3 mA shock)0.10.10.10.00.3-0.2
One hour access (shock baseline)0.00.00.0-0.20.00.1
Number of responses in last shaping day0.70.81.0-0.81.00.8
Context. condit. distance diff. score0.40.40.60.7-0.70.6
Locomotion velocity, session 11.01.11.8-1.01.3-0.6
Locomotion distance, session 10.60.82.4-0.10.4-1.5
Locomotion velocity, session 20.40.51.5-0.0-0.0-1.2
Locomotion distance, session 21.42.05.40.7-0.3-2.3
Locomotion velocity, session 30.30.40.70.4-0.80.5
Locomotion distance, session 31.31.42.0-1.01.41.1
Stereotopy head waving bouts, day 31.72.02.91.4-1.7-1.1
Stereotopy head waving duration, day 31.82.24.11.3-2.0-1.0
Locomotion velocity, session 70.10.10.10.3-0.2-0.3
Locomotion distance, session 70.50.61.50.10.5-1.2
Stereotopy head waving bouts, day 70.10.10.30.3-0.50.3
Stereotopy head waving duration, day 70.91.12.21.0-1.50.1
Locomotion velocity, session 80.00.00.10.3-0.30.1
Locomotion distance, session 80.20.20.40.5-0.2-0.6
Degree of sensitization distance1.81.83.80.9-0.9-1.9
Degree of sensitization stereotypy0.20.30.50.5-0.7-0.0
Condit. Reinf. active minus inactive responses1.41.62.5-1.01.11.6
Condit. Reinf. active-inactive response ratio0.30.40.8-0.30.30.9
Condit. Reinf. active responses1.82.13.1-1.21.31.8
Condit. Reinf. inactive responses0.50.60.9-0.81.00.5
Incentive salience index mean1.72.03.4-1.11.21.8
Condit. Reinf. lever presses0.91.22.2-0.80.91.5
Time in familiar zone, hab. session 11.41.32.01.1-1.4-0.9
Time in novel zone, hab. session 16.36.26.9-2.62.52.3
Total zone transitions, hab. session 10.50.60.9-0.91.0-0.4
Total locomotion distance, hab. session 11.52.22.9-1.71.70.9
Locomotion velocity, hab. session 11.11.62.3-1.41.50.7
Time in familiar zone, hab. session 20.40.40.80.9-0.7-0.3
Time in novel zone, hab. session 20.30.30.7-0.80.40.2
Total zone transitions, hab. session 20.30.30.7-0.30.4-0.8
Total locomotion distance, hab. session 20.10.20.3-0.20.5-0.5
Locomotion velocity, hab. session 20.10.20.3-0.20.5-0.5
Novel to familiar place preference ratio1.01.11.8-1.31.20.2
Novelty place preference1.21.32.2-1.51.20.4
Time in novel zone, NPP test1.61.72.7-1.71.30.7
Total zone transitions, NPP test0.20.30.5-0.20.6-0.7
Total locomotion distance, NPP test0.40.50.9-0.51.0-0.6
Locomotion velocity, NPP test0.30.51.1-0.10.6-1.0
Pavlov. Cond. lever latency0.00.00.00.1-0.10.1
Pavlov. Cond. magazine entry latency0.60.81.5-0.50.81.2
Pavlov. Cond. change in total contacts0.10.20.20.4-0.4-0.4
Pavlov. Cond. index score0.30.40.6-0.60.60.8
Pavlov. Cond. latency score0.30.30.5-0.50.50.7
Pavlov. Cond. lever contacts0.00.00.0-0.20.10.1
Pavlov. Cond. magazine entry number0.20.30.50.5-0.7-0.4
Pavlov. Cond. intertrial magazine entries0.00.00.1-0.30.0-0.1
Pavlov. Cond. lever-magazine prob. diff.0.40.40.6-0.50.60.8
Pavlov. Cond. response bias0.30.30.5-0.50.70.5
Bone: apparent density0.50.92.2-0.60.41.5
Bone surface0.40.71.6-0.60.51.2
Bone volume1.42.44.5-1.21.12.1
Bone: connectivity density0.30.51.00.8-1.0-0.0
Bone: cortical apparent density3.95.15.52.3-2.1-2.3
Bone: cortical area0.40.61.1-0.51.10.7
Bone: cortical porosity10.311.111.7-3.33.33.4
Bone: cortical porosity11.312.212.3-3.53.53.5
Bone: cortical thickness0.00.10.20.20.4-0.1
Bone: cortical thickness1.72.02.3-1.31.41.5
Bone: cortical tissue density4.35.66.02.4-2.2-2.4
Bone: elastic displacement0.20.30.50.2-0.50.7
Bone: elastic work1.01.32.8-0.60.71.7
Bone: endosteal estimation1.63.43.9-1.71.82.0
Bone: endosteal perimeter0.91.92.9-1.21.21.7
Bone: final force1.52.53.5-1.21.61.9
Bone: final moment1.11.92.8-1.01.31.7
Bone: marrow area1.53.13.3-1.71.81.8
Bone: maximum diameter1.01.72.3-1.21.51.2
Bone: maximum force0.71.21.9-0.71.11.4
Bone: maximum moment0.40.71.3-0.50.81.1
Bone: minimum diameter1.62.93.6-1.41.81.9
Bone: periosteal estimation1.63.24.1-1.62.01.8
Bone: periosteal perimeter1.62.62.9-1.51.71.7
Bone: post-yield work0.00.10.10.40.1-0.0
Bone: stiffness0.60.91.3-0.70.91.1
Bone: tissue strength0.20.20.30.6-0.3-0.2
Bone: trabecular number0.20.30.50.4-0.60.7
Bone: trabecular spacing0.30.40.6-0.30.8-0.6
Bone: trabecular thickness0.60.81.5-0.60.61.2
Bone: trabecular tissue density0.40.61.3-0.31.2-0.7
Breakpoint value in progressive ratio session0.80.91.8-0.60.81.3
Distance traveled before self-admin3.23.53.7-1.91.91.8
Distance traveled after self-admin0.20.20.70.8-0.30.0
Delta time in closed arm before/after self-admin0.70.71.10.6-1.0-0.8
Delta time in open arm before/after self-admin3.23.03.3-1.71.81.6
Diff in mean of infusions in LGA sessions0.30.30.40.5-0.70.5
Extinction: sum of active levers before priming0.30.30.60.5-0.40.8
Active lever presses in extinction session 60.10.10.3-0.30.50.2
Delta distance traveled before/after self-admin2.52.64.12.0-1.8-0.7
Delta ambulatory time before/after self-admin2.22.43.71.9-1.6-0.8
Time in closed arm before self-admin1.92.23.5-1.11.41.9
Time in closed arm after self-admin0.10.10.2-0.20.40.4
Time in open arm before self-admin2.93.03.91.5-1.7-2.0
Time in open arm after self-admin0.50.60.9-0.80.90.4
Sum of active levers in priming session hrs 5-60.40.40.6-0.30.60.8
Time to tail flick, vehicle, before self-admin0.20.20.30.6-0.5-0.2
Time to tail flick, vehicle, after self-admin0.60.71.2-0.91.10.2
Time to tail flick, test, before self-admin0.60.60.9-0.91.0-0.5
Time to tail flick, test, after self-admin3.23.33.61.9-1.7-1.8
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.20.2-0.1
Delta time to tail flick, test, before/after SA2.32.02.91.7-1.7-0.6
Ambulatory time before self-admin1.21.31.5-1.11.11.2
Ambulatory time after self-admin1.71.93.61.9-1.4-0.4
Total heroin consumption0.60.70.9-0.71.00.8
Area under the delay curve0.40.40.90.3-0.3-1.0
Delay disc. indifference point, 0s delay1.51.71.91.2-1.4-1.3
Delay disc. indifference point, 16s delay0.10.10.1-0.30.10.3
Delay disc. indifference point, 2s delay1.41.61.71.2-1.3-1.2
Delay disc. indifference point, 24s delay0.20.20.20.5-0.4-0.4
Delay disc. indifference point, 4s delay2.22.33.91.2-1.3-2.0
Delay disc. indifference point, 8s delay0.20.20.6-0.00.1-0.8
Delay discount exponential model param0.30.30.8-0.20.30.9
Delay discount hyperbolic model param0.60.61.4-0.40.51.2
Fecal boli incidents, locomotor time 11.71.82.1-1.31.31.4
Change in fecal boli incidents, locomotor task0.20.20.4-0.70.4-0.0
Time >=10cm from walls, locomotor time 11.61.62.7-1.41.60.3
Bouts of movement, locomotor time 11.11.22.1-1.31.4-0.0
Total resting periods, locomotor time 10.80.91.5-1.01.2-0.6
Rest time, locomotor task time 11.31.42.1-1.51.40.4
Distance moved, locomotor task time 11.31.42.01.4-1.0-1.1
Vertical activity count, locomotor time 11.01.01.51.2-1.2-0.2
Time >=10cm from walls, locomotor time 20.50.51.0-0.81.0-0.2
Bouts of movement, locomotor time 20.70.71.01.0-0.7-0.8
Total resting periods, locomotor time 20.20.20.40.6-0.2-0.5
Rest time, locomotor task time 21.31.62.3-1.51.50.3
Distance moved, locomotor task time 21.72.02.51.5-1.1-1.6
Vertical activity count, locomotor time 23.63.94.92.2-2.2-1.5
Weight adjusted by age0.10.10.30.10.20.6
Seeking ratio, delayed vs. immediate footshock0.80.91.2-1.10.71.0
Locomotion in novel chamber1.21.52.81.3-1.70.1
Locomotion in novel chamber post-restriction0.10.20.40.6-0.3-0.2
Progressive ratio0.10.10.3-0.2-0.0-0.6
Food seeking constrained by brief footshock1.62.03.01.6-1.7-0.4
Seeking ratio, punishment vs. effort0.81.01.61.3-1.10.3
Run reversals in cocaine runway, females1.51.53.30.9-0.7-1.8
Run reversals in cocaine runway, males0.30.30.4-0.50.70.5
Latency to leave start box in cocaine runway2.93.23.81.8-1.6-2.0
Latency to leave start box in cocaine runway, F2.22.42.71.6-1.3-1.7
Latency to leave start box in cocaine runway, M0.00.00.00.1-0.20.0
Cd content in liver0.10.10.20.2-0.40.5
Co content in liver0.00.00.10.3-0.2-0.1
Cu content in liver0.10.10.30.30.10.5
Fe content in liver0.70.81.9-0.40.51.4
K content in liver0.50.50.80.5-0.7-0.9
Mg content in liver0.50.50.90.4-1.0-0.6
Mn content in liver1.31.52.70.9-1.6-1.0
Na content in liver0.50.61.2-0.70.21.1
Rb content in liver0.00.00.00.1-0.1-0.2
Se content in liver0.20.20.30.5-0.6-0.3
Sr content in liver0.10.10.2-0.10.2-0.4
Zn content in liver0.40.50.70.8-0.5-0.7