Fzd5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 IL gene expression ENSRNOG00000014678 0.17 0.14 3.9e-03 0.07 0.06 0.07 0.07 1.0e-02 1.6e-02 1.0e-02 1.0e-02
2 Liver gene expression ENSRNOG00000014678 0.05 0.05 3.1e-05 0.02 0.03 0.03 0.03 1.7e-03 1.1e-04 3.8e-04 1.5e-04
3 NAcc gene expression ENSRNOG00000014678 0.09 0.11 2.0e-03 0.02 0.01 0.04 0.02 1.2e-02 2.4e-02 1.1e-03 1.9e-02
4 PL gene expression ENSRNOG00000014678 0.08 0.06 7.6e-07 0.05 0.08 0.07 0.06 2.0e-04 2.2e-06 6.7e-06 1.4e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail9.229.732.4-5.55.3-5.7-5.3
BMI without tail4.59.311.4-3.12.8-3.4-2.9
Body weight0.41.82.0-1.41.3-1.4-1.3
Epididymis fat weight0.10.20.60.3-0.10.80.1
Glucose0.91.41.8-1.21.1-1.3-1.1
Heart weight0.60.92.90.7-0.11.70.2
Left kidney weight0.10.20.3-0.40.4-0.6-0.5
Right kidney weight0.00.00.1-0.10.20.0-0.2
Tail length5.215.616.03.9-4.03.94.0
Length with tail5.821.424.04.6-4.54.94.5
Length without tail1.32.93.31.8-1.61.81.6
Liver weight, left1.62.63.21.5-1.81.31.8
Liver weight, right0.50.91.40.8-1.20.31.1
Parametrial fat weight0.30.60.70.8-0.80.80.8
Retroperitoneal fat weight0.62.02.4-1.41.6-1.1-1.6
Intraocular pressure2.33.24.1-1.82.0-1.2-2.0
Extensor digitorum longus weight2.39.312.9-3.02.7-3.6-2.8
Soleus weight0.20.72.3-0.60.1-1.5-0.1
Tibialis anterior weight0.82.75.5-1.51.2-2.3-1.2
Tibia length1.74.95.42.2-2.22.32.2
Number of licking bursts0.10.10.2-0.20.5-0.0-0.5
Food consumed during 24 hour testing period0.50.60.80.7-0.90.40.9
Times rat made contact with spout0.81.01.01.0-1.00.91.0
Mean time between licks in bursts0.40.60.6-0.80.8-0.8-0.8
Mean num. licks in bursts0.30.40.50.5-0.70.40.7
Std. dev. time between licks in bursts3.23.94.3-1.91.9-2.1-1.9
Water consumed over 24 hours0.40.40.9-0.60.4-1.0-0.5
Indifference point 0 sec0.81.31.6-1.11.3-0.9-1.3
Indifference point AUC0.40.50.90.4-0.9-0.40.9
Indifference point function ln k1.62.33.6-1.41.9-0.6-1.8
Indifference point function log k1.62.33.6-1.41.9-0.6-1.8
Delay discounting total patch changes 0 sec0.71.11.5-1.01.2-0.7-1.2
Delay discounting total patch changes 12 sec0.10.20.4-0.0-0.4-0.70.3
Delay discounting total patch changes 18 sec0.60.71.3-0.80.7-1.1-0.7
Delay discounting total patch changes 24 sec0.10.10.2-0.1-0.1-0.50.1
Delay discounting total patch changes 6 sec1.11.72.9-1.31.0-1.7-1.1
Delay discounting time to switch 0 sec0.00.00.00.2-0.10.20.1
Delay discounting water rate 0 sec0.10.10.1-0.30.3-0.2-0.3
Delay discounting water rate 12 sec0.30.50.8-0.60.9-0.1-0.9
Delay discounting water rate 18 sec0.70.92.00.9-0.61.40.6
Delay discounting water rate 24 sec0.20.30.80.20.30.9-0.3
Delay discounting water rate 6 sec1.31.92.3-1.41.5-1.1-1.5
Locomotor activity0.00.10.30.20.10.5-0.1
Locomotor testing distance0.10.20.4-0.00.50.6-0.4
Locomotor testing rearing0.00.10.20.20.20.5-0.1
Light reinforcement 11.93.44.5-1.81.7-2.1-1.7
Light reinforcement 20.81.01.11.0-1.01.01.0
Reaction time number correct0.30.40.7-0.60.8-0.2-0.8
Reaction time mean minus median0.10.20.7-0.3-0.1-0.80.0
Reaction time mean minus median AUC0.10.10.30.1-0.4-0.50.4
Reaction time num false alarms3.85.25.4-2.32.3-2.3-2.3
Reaction time num false alarms AUC3.44.74.9-2.12.2-2.1-2.2
Reaction time trials correct on left0.30.40.7-0.60.8-0.2-0.8
Reaction time trials on left0.30.40.7-0.60.8-0.2-0.8
Reaction time mean3.24.45.12.1-2.21.82.2
Reaction time mean AUC2.53.33.81.8-2.01.51.9
Median of all reaction times5.06.87.22.6-2.72.52.7
Reaction time omissions0.00.10.1-0.10.30.3-0.3
Reaction time false alarm rate1.42.02.2-1.41.5-1.4-1.5
Reaction time premature initiation rate0.20.30.30.6-0.60.50.6
Reaction time premature initiations0.00.00.10.10.00.2-0.0
Std. dev. reaction times0.40.60.90.7-0.90.30.9
Reaction time trials completed0.30.40.7-0.60.8-0.2-0.8
Reaction time trials AUC0.20.30.5-0.50.7-0.1-0.7
Social response proportion0.30.30.40.5-0.60.40.6
Social responses0.40.50.80.7-0.90.10.8
Social time0.30.40.40.6-0.70.50.7
Conditioned locomotion1.01.21.51.1-1.20.81.2
Cocaine response after cond. corrected1.11.21.41.1-1.20.91.2
Cocaine response after cond. not corrected1.81.92.31.4-1.31.51.3
Cocaine response before conditioning0.10.20.60.30.10.8-0.1
Saline control response1.01.32.1-1.20.9-1.4-1.0
Condit. Reinf. active minus inactive responses8.110.110.73.1-3.33.03.3
Condit. Reinf. active-inactive response ratio7.27.67.82.7-2.82.72.8
Condit. Reinf. active responses5.27.27.92.6-2.82.52.8
Condit. Reinf. inactive responses0.30.30.40.6-0.60.50.6
Condit. Reinf. lever presses0.91.31.41.1-1.21.01.2
Condit. Reinf. lever reinforcers received5.67.98.32.8-2.92.72.9
Pavlov. Cond. lever latency1.41.92.3-1.41.3-1.5-1.3
Pavlov. Cond. magazine entry latency0.20.30.30.5-0.60.40.6
Pavlov. Cond. change in total contacts1.52.12.21.4-1.51.51.5
Pavlov. Cond. index score1.92.52.61.6-1.61.51.6
Pavlov. Cond. latency score1.72.12.21.5-1.51.41.5
Pavlov. Cond. lever contacts2.63.64.11.9-1.82.01.8
Pavlov. Cond. magazine entry number0.60.81.1-0.81.0-0.5-1.0
Pavlov. Cond. intertrial magazine entries2.33.03.3-1.71.7-1.8-1.7
Pavlov. Cond. lever-magazine prob. diff.1.72.22.31.5-1.51.41.5
Pavlov. Cond. response bias2.43.33.41.8-1.81.91.8
Conditioned reinforcement - actives0.20.20.4-0.50.6-0.0-0.6
Conditioned reinforcement - inactives2.32.63.51.5-1.51.91.5
Conditioned locomotion6.27.410.0-2.82.4-3.2-2.5
Intermittent access intake day 1-15 change0.00.00.1-0.20.2-0.2-0.2
Intermittent access intake escalation0.00.00.0-0.10.1-0.1-0.1
Intermittent access intake escalation 20.00.00.10.1-0.2-0.30.1
Intermitt. access day 1 inactive lever presses0.40.51.60.4-0.21.30.3
Intermitt. access day 15 inactive lever presses1.11.22.01.0-0.91.40.9
Intermitt. access escalation Index3.12.86.4-1.61.0-2.5-1.1
Intermittent access day 1 total infusions0.00.00.1-0.20.0-0.4-0.0
Intermittent access day 15 total infusions0.30.30.4-0.60.5-0.6-0.5
Intermittent access terminal intake (last 3 days)0.70.70.9-0.80.8-0.9-0.8
Intermittent access total infusions0.10.10.3-0.20.0-0.5-0.0
Intermittent access day 1 locomotion0.00.00.0-0.20.0-0.2-0.0
Intermittent access day 15 total locomotion0.00.00.0-0.20.1-0.1-0.0
Intermittent access total locomotion0.50.61.1-0.90.5-1.1-0.5
Intermittent access standard deviation0.80.81.00.9-0.81.00.8
Cocaine induced anxiety0.70.71.1-0.81.0-0.4-1.0
Post-drug Anxiety0.70.71.1-0.81.1-0.3-1.0
Baseline Anxiety0.90.91.60.9-0.71.30.8
Lifetime Intake0.20.30.4-0.50.5-0.6-0.5
Incentive Sensitization - Responses0.10.10.20.2-0.4-0.30.4
Incentive Sensitization - Breakpoint0.10.10.10.1-0.4-0.20.3
Progressive ratio test 1 active lever presses0.20.20.4-0.50.1-0.6-0.1
Progressive ratio test 1 breakpoint0.10.10.3-0.40.0-0.5-0.0
Progressive ratio test 1 inactive lever presses1.11.21.5-1.21.2-0.5-1.2
Progressive ratio test 2 active lever presses0.10.10.2-0.30.2-0.5-0.2
Progressive ratio test 2 breakpoint0.00.00.1-0.10.0-0.2-0.0
Progressive ratio test 2 inactive lever presses0.10.10.2-0.40.2-0.5-0.3
Total sessions with >9 infusions0.10.10.30.00.20.6-0.2
Short access day 1 total inactive lever presses0.00.10.2-0.40.2-0.0-0.2
Short access day 10 total inactive lever presses1.51.72.71.3-1.11.61.1
Short access day 1 total infusions0.30.30.3-0.60.6-0.4-0.6
Short access day 10 total infusions0.10.10.10.3-0.30.20.3
Short access total infusions0.60.60.7-0.70.9-0.7-0.8
Short access day 1 locomotion0.80.81.00.9-1.00.71.0
Short access day 10 total locomotion0.50.51.00.7-0.51.00.6
Short access total locomotion0.10.10.2-0.30.1-0.4-0.1
Compulsive drug intake0.20.20.20.4-0.50.10.4
One hour access (0.3 mA shock)0.10.20.30.3-0.5-0.00.5
One hour access (shock baseline)0.00.00.00.0-0.10.00.1
Number of responses in last shaping day1.31.33.31.0-0.61.80.7
Context. condit. distance diff. score0.60.71.3-0.71.1-0.1-1.1
Locomotion velocity, session 11.51.61.71.3-1.31.31.3
Locomotion distance, session 10.10.10.10.3-0.40.10.3
Locomotion velocity, session 20.10.10.2-0.0-0.3-0.40.2
Locomotion distance, session 20.10.10.4-0.30.2-0.6-0.2
Locomotion velocity, session 30.60.60.7-0.80.8-0.8-0.8
Locomotion distance, session 31.71.92.21.4-1.31.51.3
Stereotopy head waving bouts, day 32.32.82.9-1.71.6-1.7-1.6
Stereotopy head waving duration, day 33.23.95.1-2.01.8-2.3-1.8
Locomotion velocity, session 70.10.10.2-0.20.2-0.5-0.2
Locomotion distance, session 70.20.20.40.5-0.60.10.6
Stereotopy head waving bouts, day 70.30.30.5-0.50.7-0.2-0.7
Stereotopy head waving duration, day 71.82.22.6-1.51.6-1.1-1.6
Locomotion velocity, session 80.10.10.1-0.20.4-0.1-0.4
Locomotion distance, session 80.10.20.3-0.20.60.2-0.5
Degree of sensitization distance0.90.91.7-0.90.7-1.3-0.7
Degree of sensitization stereotypy0.50.50.8-0.70.9-0.3-0.9
Condit. Reinf. active minus inactive responses1.11.21.31.1-1.11.21.1
Condit. Reinf. active-inactive response ratio0.10.20.40.4-0.20.60.2
Condit. Reinf. active responses1.61.92.41.3-1.51.11.5
Condit. Reinf. inactive responses0.91.11.71.0-1.30.41.3
Incentive salience index mean1.21.51.81.2-1.31.01.3
Condit. Reinf. lever presses0.81.01.70.9-1.30.21.3
Time in familiar zone, hab. session 12.12.02.2-1.41.5-1.3-1.5
Time in novel zone, hab. session 16.76.56.72.5-2.62.42.6
Total zone transitions, hab. session 10.60.80.90.9-0.90.90.9
Total locomotion distance, hab. session 11.92.82.91.7-1.71.61.7
Locomotion velocity, hab. session 11.52.12.31.5-1.51.31.5
Time in familiar zone, hab. session 20.50.51.0-0.70.5-1.0-0.5
Time in novel zone, hab. session 20.30.30.90.5-0.20.90.2
Total zone transitions, hab. session 20.10.20.50.4-0.10.70.1
Total locomotion distance, hab. session 20.20.30.60.5-0.20.80.2
Locomotion velocity, hab. session 20.20.20.50.5-0.20.70.2
Novel to familiar place preference ratio1.31.31.41.2-1.21.11.2
Novelty place preference1.41.51.81.2-1.30.91.3
Time in novel zone, NPP test1.71.82.11.3-1.41.11.4
Total zone transitions, NPP test0.20.30.30.6-0.50.50.5
Total locomotion distance, NPP test0.60.80.90.9-0.90.90.9
Locomotion velocity, NPP test0.20.30.30.6-0.60.40.6
Pavlov. Cond. lever latency0.00.00.1-0.10.20.1-0.2
Pavlov. Cond. magazine entry latency0.50.70.70.8-0.80.80.8
Pavlov. Cond. change in total contacts0.10.10.3-0.40.2-0.5-0.2
Pavlov. Cond. index score0.30.40.60.6-0.80.30.8
Pavlov. Cond. latency score0.30.30.50.5-0.70.30.7
Pavlov. Cond. lever contacts0.10.10.20.1-0.4-0.30.4
Pavlov. Cond. magazine entry number0.40.50.6-0.70.6-0.8-0.6
Pavlov. Cond. intertrial magazine entries0.00.00.00.0-0.0-0.00.0
Pavlov. Cond. lever-magazine prob. diff.0.40.50.70.6-0.80.40.8
Pavlov. Cond. response bias0.50.60.70.7-0.90.60.9
Bone: apparent density0.10.10.20.4-0.40.20.4
Bone surface0.20.40.60.5-0.8-0.10.8
Bone volume0.81.31.51.1-1.20.91.2
Bone: connectivity density0.71.01.9-1.00.8-1.4-0.8
Bone: cortical apparent density3.34.35.9-2.11.8-2.4-1.8
Bone: cortical area0.71.11.41.1-1.20.81.2
Bone: cortical porosity9.810.613.53.3-3.03.73.0
Bone: cortical porosity11.112.014.63.5-3.23.83.3
Bone: cortical thickness0.10.20.30.4-0.50.00.5
Bone: cortical thickness1.72.02.71.4-1.60.91.6
Bone: cortical tissue density3.74.86.4-2.22.0-2.5-2.0
Bone: elastic displacement0.20.20.2-0.50.4-0.3-0.4
Bone: elastic work0.40.50.70.8-0.70.80.7
Bone: endosteal estimation1.63.43.61.8-1.91.81.9
Bone: endosteal perimeter0.71.42.31.2-1.01.51.0
Bone: final force1.32.22.41.6-1.51.31.5
Bone: final moment0.91.51.71.3-1.21.21.2
Bone: marrow area1.63.43.61.8-1.91.81.9
Bone: maximum diameter1.22.22.31.5-1.51.51.5
Bone: maximum force0.61.11.31.1-1.10.91.1
Bone: maximum moment0.30.60.70.8-0.70.70.7
Bone: minimum diameter1.73.13.41.8-1.71.81.7
Bone: periosteal estimation2.04.04.02.0-2.02.02.0
Bone: periosteal perimeter1.72.83.11.7-1.61.81.6
Bone: post-yield work0.10.10.30.10.10.5-0.1
Bone: stiffness0.50.80.90.9-1.00.70.9
Bone: tissue strength0.30.30.5-0.30.70.1-0.6
Bone: trabecular number0.20.30.6-0.60.5-0.8-0.5
Bone: trabecular spacing0.50.61.20.8-0.61.10.6
Bone: trabecular thickness0.30.40.40.6-0.70.50.7
Bone: trabecular tissue density0.91.31.91.1-1.01.41.0
Breakpoint value in progressive ratio session0.80.81.30.8-1.20.31.1
Distance traveled before self-admin3.43.64.61.9-2.11.42.1
Distance traveled after self-admin0.10.10.3-0.3-0.0-0.5-0.0
Delta time in closed arm before/after self-admin0.90.91.1-1.01.0-0.9-1.0
Delta time in open arm before/after self-admin3.63.43.71.8-1.91.71.9
Diff in mean of infusions in LGA sessions0.40.40.5-0.60.6-0.7-0.6
Extinction: sum of active levers before priming0.10.10.4-0.40.1-0.6-0.2
Active lever presses in extinction session 60.30.30.50.5-0.70.30.7
Delta distance traveled before/after self-admin2.83.03.2-1.81.7-1.6-1.7
Delta ambulatory time before/after self-admin2.42.62.7-1.61.6-1.5-1.6
Time in closed arm before self-admin1.61.82.31.4-1.21.51.2
Time in closed arm after self-admin0.20.20.40.4-0.20.70.2
Time in open arm before self-admin2.93.13.5-1.71.7-1.9-1.7
Time in open arm after self-admin0.91.01.40.9-1.20.51.2
Sum of active levers in priming session hrs 5-60.60.60.90.6-1.00.20.9
Time to tail flick, vehicle, before self-admin0.20.20.5-0.50.4-0.7-0.4
Time to tail flick, vehicle, after self-admin1.11.22.51.1-0.81.60.8
Time to tail flick, test, before self-admin0.90.92.10.9-0.51.50.6
Time to tail flick, test, after self-admin2.62.63.0-1.71.5-1.7-1.5
Delta time to tail flick, vehicle, before/after SA0.10.10.40.20.00.6-0.0
Delta time to tail flick, test, before/after SA3.02.74.9-1.71.2-2.2-1.2
Ambulatory time before self-admin1.31.42.11.1-1.40.51.4
Ambulatory time after self-admin1.61.72.9-1.41.0-1.7-1.0
Total heroin consumption0.70.90.91.0-0.90.90.9
Area under the delay curve0.10.10.1-0.40.3-0.3-0.3
Delay disc. indifference point, 0s delay1.61.71.9-1.41.2-1.3-1.3
Delay disc. indifference point, 16s delay0.00.00.00.1-0.20.10.2
Delay disc. indifference point, 2s delay1.61.81.9-1.31.4-1.3-1.4
Delay disc. indifference point, 24s delay0.20.20.2-0.40.4-0.4-0.4
Delay disc. indifference point, 4s delay1.41.51.7-1.31.2-1.3-1.2
Delay disc. indifference point, 8s delay0.00.00.00.1-0.10.10.1
Delay discount exponential model param0.10.10.10.3-0.20.30.2
Delay discount hyperbolic model param0.20.20.30.5-0.50.50.5
Fecal boli incidents, locomotor time 11.51.61.71.3-1.31.31.3
Change in fecal boli incidents, locomotor task0.10.10.10.4-0.30.40.3
Time >=10cm from walls, locomotor time 12.62.72.81.6-1.71.61.7
Bouts of movement, locomotor time 11.82.02.11.4-1.41.41.4
Total resting periods, locomotor time 11.31.41.51.2-1.21.21.2
Rest time, locomotor task time 11.92.02.11.4-1.51.41.5
Distance moved, locomotor task time 10.80.91.0-1.00.9-1.0-0.9
Vertical activity count, locomotor time 11.41.41.5-1.21.2-1.2-1.2
Time >=10cm from walls, locomotor time 20.80.90.91.0-0.91.00.9
Bouts of movement, locomotor time 20.50.50.5-0.70.7-0.7-0.7
Total resting periods, locomotor time 20.00.00.1-0.20.2-0.2-0.2
Rest time, locomotor task time 21.82.12.31.5-1.41.51.5
Distance moved, locomotor task time 20.91.11.2-1.11.0-1.1-1.0
Vertical activity count, locomotor time 24.34.74.9-2.22.2-2.2-2.2
Weight adjusted by age0.10.20.20.2-0.5-0.40.4
Seeking ratio, delayed vs. immediate footshock0.60.71.00.7-1.00.31.0
Locomotion in novel chamber2.12.65.0-1.61.2-2.2-1.2
Locomotion in novel chamber post-restriction0.10.10.3-0.30.1-0.6-0.1
Progressive ratio0.00.00.0-0.00.1-0.0-0.1
Food seeking constrained by brief footshock2.43.04.5-1.71.5-2.1-1.5
Seeking ratio, punishment vs. effort1.01.21.8-1.10.9-1.3-0.9
Run reversals in cocaine runway, females0.60.61.0-0.71.0-0.1-1.0
Run reversals in cocaine runway, males0.40.40.70.7-0.40.80.5
Latency to leave start box in cocaine runway2.52.82.9-1.61.7-1.7-1.7
Latency to leave start box in cocaine runway, F1.82.02.3-1.31.5-1.3-1.5
Latency to leave start box in cocaine runway, M0.10.10.3-0.2-0.0-0.6-0.0
Cd content in liver0.20.20.4-0.40.60.0-0.6
Co content in liver0.10.20.2-0.20.50.4-0.5
Cu content in liver0.00.00.00.1-0.00.10.0
Fe content in liver0.20.30.50.5-0.30.70.4
K content in liver0.80.82.4-0.70.3-1.5-0.3
Mg content in liver1.01.12.3-0.90.7-1.5-0.8
Mn content in liver2.42.83.2-1.61.6-1.8-1.6
Na content in liver0.50.50.90.2-0.8-0.90.7
Rb content in liver0.00.00.0-0.10.0-0.2-0.1
Se content in liver0.40.50.7-0.60.8-0.3-0.8
Sr content in liver0.10.10.10.2-0.3-0.10.3
Zn content in liver0.40.40.6-0.50.6-0.8-0.6